mRNA_Ecto-sp8_S_contig10572.900.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10572.900.1
Unique NamemRNA_Ecto-sp8_S_contig10572.900.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 524 bits (1350), Expect = 5.390e-185
Identity = 305/349 (87.39%), Postives = 309/349 (88.54%), Query Frame = 1 
Query:    4 VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVLLRXXXXXXXXXXXXXXXXXXXX---ALSLFTARVLSLRPAKGSYGGGGGSFKAAEAGAGRVGGNGAGGCGESRPYFFVVTDDGIHDVPAAAALGEGEGWEGR 1041
            VPAGSG SKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGG+G      HAS SR QQLQSDLEDVLIGCLRRLRVVRP GLFELLAAIEVL+FELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKN   L                 GDAATEHREYLPQIWQRAVTFRVLL+ XXXXXXXXXXXXXXXXXXX   ALSLFTARVLSLR AKG+YGGGGGSFKAA AGAGRVG  GAGG GESRPYFFVVTDDGIHDVPAAA LGEGEGWEGR
Sbjct:   34 VPAGSGSSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGVGGGGGTIHASPSRLQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNGKDL-----------------GDAATEHREYLPQIWQRAVTFRVLLQRXXXXXXXXXXXXXXXXXXXXXXALSLFTARVLSLRLAKGNYGGGGGSFKAAAAGAGRVGRYGAGGDGESRPYFFVVTDDGIHDVPAAATLGEGEGWEGR 365
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BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 1.840e-103
Identity = 164/167 (98.20%), Postives = 166/167 (99.40%), Query Frame = 1 
Query:    4 VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRPAVVVVDGMGSFFWQDKM 504
            VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRP GLFELLAAIEVL+FELGHRPAVVVVDGMGSFFWQDK+
Sbjct:   34 VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKV 200
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BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: UPI001CF6073B (DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnus TaxID=8234 RepID=UPI001CF6073B)

HSP 1 Score: 107 bits (268), Expect = 2.910e-23
Identity = 79/243 (32.51%), Postives = 122/243 (50.21%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVL 744
            +D G   G+VVELYG  G+GK+E+L +++ RCV+P   GG E   VF D D  L +LRL  +L  +++  T     ++ GG G       A S+    + SD E  L  CL RL VV  +   +LL  +  L+  L  RP  A+V++D + +F+W D+     GG +++ Q       A+ L RL  +  + +FA  +A+                +S   ++   R YL + WQR VT R+L
Sbjct:   28 EDGGPDHGEVVELYGTEGTGKTELLYHLLCRCVLPVAAGGLEVDVVFVDTDYSLDMLRLVSILDSRLNAGTHTHAVASEGGSGP------ALSTSSPSVASD-EAALRSCLARLLVVHCSSSSQLLLTLHFLETSLSSRPGLALVLIDSISAFYWLDRCE---GGASIAKQEEKLSKCAELLGRLLRDYRITVFATCHAI---------RRSYSGPSSSSASSESDRPYLCRPWQRLVTHRLL 251
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BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: UPI001F07E576 (DNA repair protein XRCC2 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07E576)

HSP 1 Score: 100 bits (249), Expect = 1.800e-20
Identity = 75/256 (29.30%), Postives = 125/256 (48.83%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQ-SDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIV----AKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXN-----------SRGDAATEHREYLPQIWQRAVTFRVLL 747
            +D G   GDVVEL+G  G+GK+E+L +++ RC++P   GG     VF D D    +LRL  +L+ +++            G G       +S  + Q    SD E  +  CL RL VV  +   +LL  +  L+  +  RP  +++++D + +F+W D+   S GG++V+ Q +     ++ L RL  +  + +FA+ +A+    GN          +           S   A+   R+YL + WQR VT R+LL
Sbjct:   28 EDGGPNYGDVVELHGTEGTGKTELLYHLLVRCLLPEDAGGLGVEVVFLDTDHHFDMLRLVTVLEHRLAQTI---------GAGSTEEGCESSGGQGQATATSDPETRVRACLSRLSVVHCSSSAQLLLTLHFLETSMCSRPKLSLLIIDSISAFYWMDR---SGGGDSVAKQEVTLRKCSELLARLLRDYRISVFASTHAIMRNYGNWSSDRLGESSDAASSLPSWRKWSSAQASDYDRQYLCKPWQRLVTHRLLL 271
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BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: A0A6P8V3Q7_GYMAC (DNA repair protein XRCC2 isoform X1 n=6 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8V3Q7_GYMAC)

HSP 1 Score: 99.4 bits (246), Expect = 3.840e-20
Identity = 78/242 (32.23%), Postives = 121/242 (50.00%), Query Frame = 1 
Query:   37 DKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVL 744
            D G   G+VVELYGP G+GK+E+L ++++RC++P   GG E   VF D D  L +LRL  +L  +++  T  Q +S               S+R        E++L  CL RL VV  +   +LL  +  L+  L  RP  A++++D + +F+W D+     GG +V+ Q       A+ L RL  +  + +FA  +A+   R N         X     +  + R YL + WQR VT R+L
Sbjct:   29 DGGPEPGEVVELYGPEGTGKTELLYHLLSRCLLPLSAGGLEVDVVFMDTDYSLDMLRLVSILDSRLNAGTHQQRRSIQ------------VSARSSSSSGSDEELLGSCLSRLLVVHCSSSSQLLLTLHFLETTLTSRPRVALLLIDSISAFYWPDRCE---GGTSVTKQEEKLSKCAELLGRLLRDYRITVFATCHAI---RRNYSGPSSFSSXXXXXXSDID-RPYLCRPWQRLVTHRLL 251
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BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: A0A6P4ZTH1_BRABE (DNA repair protein XRCC2-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZTH1_BRABE)

HSP 1 Score: 98.6 bits (244), Expect = 5.060e-20
Identity = 69/241 (28.63%), Postives = 108/241 (44.81%), Query Frame = 1 
Query:   37 DKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQ-SCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAA----TEHREYLPQIWQRAVTFR 738
            D G   GD VE YGP G+ K+E+L+++ ARC++PA LGG E   VF D D    ILRL  +L+G++      +VK                                 CLRRL +VR     +L+  +  L+  L   P  A+++VD + +F+W D+    S  G+ ++ +  V   L R   +  +VL A K A+F  +            + + +       EH EY+   WQ  + +R
Sbjct:   32 DAGPKPGDAVEFYGPEGTAKTEMLLHLTARCILPASLGGLEAGVVFIDTDFHFDILRLVAILEGRLDTTDEDRVKD--------------------------------CLRRLYIVRCNSSEQLVITLHSLEHILASTPDVALLIVDSISAFYWLDRSTDDSISGQELNQRRCV-DVLSRYLTDYGIVLIATKQAIFGQKSRKSQQKEDTTLSPKVEKTKVENVEHYEYMCHAWQNMIKYR 239
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BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: UPI001BEC6CAA (DNA repair protein XRCC2 isoform X1 n=2 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BEC6CAA)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-19
Identity = 80/244 (32.79%), Postives = 117/244 (47.95%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEH-REYLPQIWQRAVTFRVL 744
            +D G   G+VVELYG  G+GK+E+L +++ RCV+P   GG E   VF D D  L +LRL  +L  ++  N      S S G                   SD E VL  CL RL VV      +LL  +  L+  L  RP  A++++D + +F+W D+     GG +++ Q    G  A+ L RL  +  + +FA  +A+                +S     +EH R YL + WQR VT R+L
Sbjct:   42 EDGGPDHGEVVELYGAEGTGKTELLYHLLCRCVLPVATGGLEVEVVFIDTDYSLDMLRLVSILDSRL--NAARSTGSPSAG-------------------SD-EVVLRSCLSRLLVVHCPSSSQLLLTLHFLETSLSSRPGLALLLIDSISAFYWLDRCE---GGASIAKQEEKLGKCAELLGRLLRDYRITVFATCHAI--------RRSYSGPSSSXXXXXSEHDRPYLCRPWQRLVTHRLL 252
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: B3RU80_TRIAD (RECA_2 domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RU80_TRIAD)

HSP 1 Score: 96.3 bits (238), Expect = 3.900e-19
Identity = 62/252 (24.60%), Postives = 117/252 (46.43%), Query Frame = 1 
Query:   25 SKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMP-----AWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXN----SRGDAATEHREYLPQIWQRAVTFRVLL 747
            SK +  G+  GDVVE YG  G GK+E+L++++ +C+MP       + G     V+ D D   ++LRL  +L+ +                        A       +    E+ +  CL R  ++R   + +L+ ++ +L++ +   P   ++++DG+GSF+WQDK + S G + +       K +  L  E  +++ A K+A+     N          N    +     ++H EY+P +W++ V +R +L
Sbjct:   28 SKLQFNGLTCGDVVEFYGSEGCGKTEMLLHLMIKCIMPDNFRGIAMNGRSMSVVYIDCDYHFNLLRLMSILEQRYCK---------------------ACQGSNATMVKHSEEFIRKCLERFYIIRCDTIHQLITSLHLLEYSISSNPDIGIMLIDGIGSFYWQDKFSSSSGVDQL------CKIVKYLCDEHNLIVLATKSAIRKQFENSRLANKSRLRNDIASNYNSTHSKHMEYMPNVWRKLVKYRYIL 252
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BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: A0A3Q3MX37_9TELE (X-ray repair complementing defective repair in Chinese hamster cells 2 n=4 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A3Q3MX37_9TELE)

HSP 1 Score: 95.9 bits (237), Expect = 4.180e-19
Identity = 72/242 (29.75%), Postives = 115/242 (47.52%), Query Frame = 1 
Query:   37 DKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVL 744
            D G   GDVVELYG  G+GK+E+L +++ RCV+P   GG E    F D D  L + RL  +L G++S++                   H + S         + VL  CL RL V+  +   +LL  +  L+  +  RP  A++++D + +F+W D+     GG +V+ Q    G  A+ L RL  +  + + A  +A+                 S   ++  +R YL ++WQR VT R+L
Sbjct:   35 DGGPDHGDVVELYGTEGTGKTELLYHLLCRCVLPQDAGGLEAEVAFVDTDYSLDMFRLVSILDGRLSSSA------------------HLAGSG--------DSVLRSCLSRLLVLHCSSSSQLLLTLHSLETSMALRPGLALLLIDSISAFYWLDRCG---GGASVTKQEELLGKCAELLGRLLRDYRITIVATCHAI----------RRTSCGPSSSSSSDPNRPYLCRLWQRLVTHRLL 237
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: UPI00117BE5CE (DNA repair protein XRCC2 isoform X1 n=4 Tax=Sphaeramia orbicularis TaxID=375764 RepID=UPI00117BE5CE)

HSP 1 Score: 95.9 bits (237), Expect = 7.000e-19
Identity = 73/243 (30.04%), Postives = 116/243 (47.74%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVL 744
            KD G   G+VVEL+GP G+GK+EVL ++++RC++P   GG E   VF D D  L +LRL  +L  K++                       +S  P   Q  L      CL RL VV  +   +LL  +  L+  L  RP  A++++D + +F+W D+   S GG +V+ Q       ++ L RL  +  + +FA  +A+                +S   ++   R +L + WQR VT R++
Sbjct:   28 KDGGPNHGEVVELFGPEGTGKTEVLYHLLSRCILPVAAGGLEVDVVFVDTDYSLDMLRLVSILDNKLNPALC------------------GASPPPASDQGTLHS----CLSRLLVVHCSSSSQLLLTLHFLETTLSSRPGLALLLIDSVSAFYWLDR---SEGGASVAKQEEKLSKCSELLGRLLRDYRITMFATCHAIRRSHAE--------PSSSSSSSSNADRPFLCRSWQRLVTHRLI 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE5.390e-18587.39Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI1.840e-10398.20Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001CF6073B2.910e-2332.51DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnu... [more]
UPI001F07E5761.800e-2029.30DNA repair protein XRCC2 n=1 Tax=Hypomesus transpa... [more]
A0A6P8V3Q7_GYMAC3.840e-2032.23DNA repair protein XRCC2 isoform X1 n=6 Tax=Nototh... [more]
A0A6P4ZTH1_BRABE5.060e-2028.63DNA repair protein XRCC2-like n=1 Tax=Branchiostom... [more]
UPI001BEC6CAA1.380e-1932.79DNA repair protein XRCC2 isoform X1 n=2 Tax=Chelmo... [more]
B3RU80_TRIAD3.900e-1924.60RECA_2 domain-containing protein n=2 Tax=Trichopla... [more]
A0A3Q3MX37_9TELE4.180e-1929.75X-ray repair complementing defective repair in Chi... [more]
UPI00117BE5CE7.000e-1930.04DNA repair protein XRCC2 isoform X1 n=4 Tax=Sphaer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10572contigEcto-sp8_S_contig10572:2904..6166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score314.7
Seed ortholog evalue5.4e-83
Seed eggNOG ortholog2880.D7FPE2
Preferred nameXRCC2
Model size1044
KEGG rclassRC00561
KEGG koko:K00454,ko:K10879,ko:K17890,ko:K21052
KEGG ReactionR03626,R07864,R07869
KEGG Pathwayko00515,ko00591,ko00592,ko01100,ko01110,ko03440,ko04136,ko04138,ko04140,ko04621,map00515,map00591,map00592,map01100,map01110,map03440,map04136,map04138,map04140,map04621
KEGG ModuleM00113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000226,GO:0000278,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0001701,GO:0001756,GO:0003002,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007127,GO:0007131,GO:0007275,GO:0007389,GO:0007399,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009952,GO:0009987,GO:0010165,GO:0010212,GO:0010332,GO:0010720,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035264,GO:0035282,GO:0035825,GO:0040007,GO:0042148,GO:0042623,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045003,GO:0045595,GO:0045597,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051321,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060429,GO:0060548,GO:0061053,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901214,GO:1901215,GO:1901360,GO:1901363,GO:1903046,GO:2000026,GO:2000269
Exons5
EggNOG free text desc.meiotic DNA recombinase assembly
EggNOG OGsKOG2859@1,KOG2859@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_004600.1
EC1.13.11.12
Cds size1044
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03029,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.378688-CDS-Ecto-sp8_S_contig10572:2903..33371681143155.378688-CDS-Ecto-sp8_S_contig10572:2903..3337Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10572 2904..3337 -
1681143155.3876967-CDS-Ecto-sp8_S_contig10572:3590..36991681143155.3876967-CDS-Ecto-sp8_S_contig10572:3590..3699Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10572 3591..3699 -
1681143155.396663-CDS-Ecto-sp8_S_contig10572:4391..45471681143155.396663-CDS-Ecto-sp8_S_contig10572:4391..4547Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10572 4392..4547 -
1681143155.4037857-CDS-Ecto-sp8_S_contig10572:4889..50501681143155.4037857-CDS-Ecto-sp8_S_contig10572:4889..5050Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10572 4890..5050 -
1681143155.4118583-CDS-Ecto-sp8_S_contig10572:5982..61661681143155.4118583-CDS-Ecto-sp8_S_contig10572:5982..6166Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10572 5983..6166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10572.900.1prot_Ecto-sp8_S_contig10572.900.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10572 2904..6166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10572.900.1

>prot_Ecto-sp8_S_contig10572.900.1 ID=prot_Ecto-sp8_S_contig10572.900.1|Name=mRNA_Ecto-sp8_S_contig10572.900.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=348bp
KVPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLG
GEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGGGGGTT
HASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHR
PAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFA
AKNALFLPRGNGGNNNSSSSSNSRGDAATEHREYLPQIWQRAVTFRVLLR
RRQKRPPSPRPPPQSSGGGGALSLFTARVLSLRPAKGSYGGGGGSFKAAE
AGAGRVGGNGAGGCGESRPYFFVVTDDGIHDVPAAAALGEGEGWEGR*
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mRNA from alignment at Ecto-sp8_S_contig10572:2904..6166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10572.900.1 ID=mRNA_Ecto-sp8_S_contig10572.900.1|Name=mRNA_Ecto-sp8_S_contig10572.900.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3263bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10572:2904..6166- (Ectocarpus species8 EcLAC_412)
AAGGTGCCAGCAGGGAGTGGCGGCAGCAAGACCAAGGACAAGGGCGTCGG
GCGGGGGGACGTGGTGGAGCTGTACGGCCCCAGCGGGAGCGGCAAGTCGG
AGGTCTTGATCAACGTGGTCGCGCGGTGCGTGATGCCGGCTTGGCTGGGC
GGGGAGGAGCGACCGGCGGTGTTTTTCGACAACGGTGAGTTGAGCAGTCG
GGATCATGATGATGGCAACAACGCCCGGGGACGGTGATGGAAACACGGGA
GTGCGAGCTGTGATGAAAAATGGAAGGTCTGCGTGCCCCTCGGAAATATA
CGACAAATATCGCCCCGAGACACACAAGACTCCTTGAAGGTCTCCCAAAA
GAGCCAGTGACGTTTGCTACGCCCACGGCGGCGGTGTGGCTGGCGGTGCC
AAAGACGTGCCTGCTTACTGTACAGAGAAAGTTACCTCAAGGAGTGTGAG
GTTGTTGAAACGGTAATGGTTTTTCCTTCCGTAGGTGAGCTGCTGCTGCT
GTGCGGTCGTGGCCATGCCTGGTGTATGTGGCTGCTGTGCAAGTATGTCG
CTGGTGTATCCTCGTTACCGCGAGAAGTAGCTCGAGAGAGGCGTGTTACC
ACTGTATTTTTTTTGCTTGTCCTTTACCGGCATTTTCACGTACGTCTGCG
CTCCGCACAGCGCGACCATGCCGTAGTTACGTTTTGTTTTTGGTTGCGAC
CATATAGATATCCGGCATTACTGACCGCGACGTACATCCGTAGGATACCG
CGGTGCCACGGCCGCAGTAGACGAGAAGGATGGACGGACAGCGACCGCAC
CTCTCACGCACGTCCTTGCTTGGAACCGCTCCTCTCTCTGGCCTTGTCGC
GTGGTTGCGTGTGTGATATTGGCGCACCGTTCAAACGGTCGACCGATCAG
ACAAGCCATGTTTTTTTGTTTAATCTCGAGACGTCGACGTTGGGGGCTGA
GTAAGCATGGTCATCCTGCCGCTTTCCGTGTTATACCCCCGCTGCCCCTC
TTGTATTTTCTTCCGTTCTCGTGTGGCGTGATGCCGTTGCTGCTGCTGCT
GCTGCGTGCACGGACATGGTGGCACATACCTGTCGGATCGGACTACCGAA
CGGGCTCGTCTCGAAGACGGCAGGCTGAGCATACTGCGACTGGAGCAGCT
TCTCAAGGGGAAGATCTCGAACAACACGACGTTTCAGGTCAAGAGCGCCT
CGGGGGGTATCGGTGGTGGAGGTGGGACGACCCACGCTTCTTCTTCACGC
CCGCAGCAGCTCCAGAGCGATTTAGAGGTAACGGGAGCGGATTCCTTCCA
TAGCACAGCCATTACGTGGGGGGTCCTCCAGAAGGCGGGGCTAGTGGTCG
ATCAAACCACCTCGCTTTGGGCCCTGGTCGCTCGAGTCGGCTGGCGTCAA
GCAAACAATCCCGTTTGCGATCTCAGACCCTCCCCCCCTAGTTAATCTGG
ATTCTATGGTAAGCCACAACTGCTCCACACGGTGGTATTCTAAGGTCTTC
CTCTGTCTCTGTCTCTGTCTTTGTCTCTCTCTCTCGTATGTGTGGTTGTG
GGTGTTGCGTTCTATACGATGTTTTGGCCACCCCTCCTGTCCCTTCGCGC
ACAACGTGGCCGCGCCAAGGACGTGTTGATTGGGTGTCTTCGGCGACTCC
GAGTCGTCCGTCCCACCGGGCTGTTCGAGCTCCTGGCCGCGATTGAGGTG
TTGAAGTTCGAGCTGGGGCACCGGCCGGCCGTCGTGGTCGTTGACGGGAT
GGGCTCCTTTTTCTGGCAGGACAAGGTGTGGTGATGATTGATGGCGATGG
CGATGAGTGGTGGCAGAGAGGGGATTCTAGCCAAGGTACCACTGCACTTC
TTTTCTCATCTCTCGTCTGTGTCATCAGAAAATGCATTTACAAACATACA
AAGACTCCCCGTCCGAGACAAAACCTCAGTCGGGATGTCTTATCCTCGCT
GTCGTCGTTTCTCTCTCGTCCGGTCACACAAAGGAGTCGTTCCTCTCTCG
TCCGGTCACACAACGGTTGCGGCCCGAGGGCCGCGCCAAAATGATTCATT
TCTCCCTGACAAGGCCCGTCACTGCAGTAACTATGCAAAAGTCAATGATA
TCGTCTTGTGGTTTTTTACGTGGTACTCCGTGCCCTGTTGCCCTTGGAAA
CATGAACGAACGTGTTCGAGCGTGGTGCTCCCTGAGTCCGTGCATTGTTT
TCTTTCCCGCCTCTGCAATATGAGTACGGAGGGGACAGGCCTCCGTCTAG
CCGAAGCTGAAGTGAAACCACATCGTTGCCAGCAAGCCTCAGGTAATTGG
GTGCGTTCTGACTCACACTTGTTTTAAAGCATCTTCCTTTGCCAAAAAAG
CACTATGCGAAGCATCTGCCTGTCTGACATGGATGGATGTCGTTAATGGT
TACGCGTTGTTGTTGTACGTTCCTTCCTTGCGGTCGTGACTCTCTCCGTA
ACACAAAACAAGTGCAGATGGCCCAGAGTTGCGGCGGAGAGGCTGTCTCG
ATGCAGGGGATCGTGGCGAAGGCCCTCGTGCGGCTAACAATGGAGCGGCC
GGTCGTCCTCTTTGCTGCGAAGAACGGTAAGGACCTGTAACAGGAGGTAG
GCACGTTTGTTCAATGGACGGGTCCTTGTTTTGGCAGAGAGAGGCGAGGA
GGAAAGGGGTATGGAGAGGGCGAGGGGGGACTTGGCAAGTGTACCACCCT
CATTTTTACCTGACGACTACGTACAAGGGCTCCACCAATCTAAAGGAGGG
ACACCCTTTACCGTCCCCCTCCCGACCACCGAAGAAACCTCTTCCGCCCC
CCCTCACGTTCATTTTTTTTTTTTGCCAGCTCTGTTCTTGCCTCGAGGGA
ACGGTGGCAACAACAACAGCAGCAGCAGCAGCAACAGCAGAGGGGACGCG
GCGACGGAGCACAGAGAGTACCTCCCGCAGATATGGCAGCGCGCGGTCAC
GTTCAGGGTCCTCTTGCGACGAAGACAGAAGCGCCCACCATCGCCCCGCC
CGCCTCCGCAATCGAGCGGCGGCGGGGGGGCCCTGTCGCTCTTCACGGCT
CGAGTTTTGAGTCTTCGCCCAGCGAAGGGTAGCTACGGTGGCGGAGGCGG
TTCTTTTAAGGCAGCCGAAGCGGGGGCGGGGCGAGTTGGTGGTAACGGTG
CGGGGGGGTGTGGCGAATCGAGGCCGTATTTTTTTGTGGTGACGGACGAC
GGTATACACGATGTTCCTGCGGCGGCCGCGCTGGGAGAAGGGGAGGGTTG
GGAGGGGCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10572:2904..6166-

>mRNA_Ecto-sp8_S_contig10572.900.1 ID=mRNA_Ecto-sp8_S_contig10572.900.1|Name=mRNA_Ecto-sp8_S_contig10572.900.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1044bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10572:2904..6166- (Ectocarpus species8 EcLAC_412)
AAGGTGCCAGCAGGGAGTGGCGGCAGCAAGACCAAGGACAAGGGCGTCGG
GCGGGGGGACGTGGTGGAGCTGTACGGCCCCAGCGGGAGCGGCAAGTCGG
AGGTCTTGATCAACGTGGTCGCGCGGTGCGTGATGCCGGCTTGGCTGGGC
GGGGAGGAGCGACCGGCGGTGTTTTTCGACAACGACGGCAGGCTGAGCAT
ACTGCGACTGGAGCAGCTTCTCAAGGGGAAGATCTCGAACAACACGACGT
TTCAGGTCAAGAGCGCCTCGGGGGGTATCGGTGGTGGAGGTGGGACGACC
CACGCTTCTTCTTCACGCCCGCAGCAGCTCCAGAGCGATTTAGAGGACGT
GTTGATTGGGTGTCTTCGGCGACTCCGAGTCGTCCGTCCCACCGGGCTGT
TCGAGCTCCTGGCCGCGATTGAGGTGTTGAAGTTCGAGCTGGGGCACCGG
CCGGCCGTCGTGGTCGTTGACGGGATGGGCTCCTTTTTCTGGCAGGACAA
GATGGCCCAGAGTTGCGGCGGAGAGGCTGTCTCGATGCAGGGGATCGTGG
CGAAGGCCCTCGTGCGGCTAACAATGGAGCGGCCGGTCGTCCTCTTTGCT
GCGAAGAACGCTCTGTTCTTGCCTCGAGGGAACGGTGGCAACAACAACAG
CAGCAGCAGCAGCAACAGCAGAGGGGACGCGGCGACGGAGCACAGAGAGT
ACCTCCCGCAGATATGGCAGCGCGCGGTCACGTTCAGGGTCCTCTTGCGA
CGAAGACAGAAGCGCCCACCATCGCCCCGCCCGCCTCCGCAATCGAGCGG
CGGCGGGGGGGCCCTGTCGCTCTTCACGGCTCGAGTTTTGAGTCTTCGCC
CAGCGAAGGGTAGCTACGGTGGCGGAGGCGGTTCTTTTAAGGCAGCCGAA
GCGGGGGCGGGGCGAGTTGGTGGTAACGGTGCGGGGGGGTGTGGCGAATC
GAGGCCGTATTTTTTTGTGGTGACGGACGACGGTATACACGATGTTCCTG
CGGCGGCCGCGCTGGGAGAAGGGGAGGGTTGGGAGGGGCGCTGA
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