prot_Ecto-sp8_S_contig104546.722.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig104546.722.1
Unique Nameprot_Ecto-sp8_S_contig104546.722.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length96
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104546.722.1 vs. uniprot
Match: D7G6A4_ECTSI (Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A4_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.980e-54
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0 
Query:    1 MAGQQPLRRLGLDDDLVSRLASQGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSRRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL 96
            MAGQQPLRRLGLDDDLVSRLAS GLHTAGDMFSKTELQLVQSLDASREKVVELLDYVS RIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL
Sbjct:    1 MAGQQPLRRLGLDDDLVSRLASAGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSTRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL 96
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BLAST of mRNA_Ecto-sp8_S_contig104546.722.1 vs. uniprot
Match: A0A2G8L9Y1_STIJA (Putative DNA repair protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L9Y1_STIJA)

HSP 1 Score: 50.1 bits (118), Expect = 5.950e-5
Identity = 30/90 (33.33%), Postives = 50/90 (55.56%), Query Frame = 0 
Query:    7 LRRLGLDDDLVSRLASQGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSRRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL 96
            L+R+G+  +L  RL   G+ T  D  SK EL+L++    SR K+ EL++ VSR ++P Q  T  ++ ++      +   +T + PLD  L
Sbjct:    6 LQRIGVSPELAMRLKRHGICTCKDFLSKNELELMKVTGLSRVKLRELIEDVSRAVIP-QHNTVLNIYKQN-----TGLFSTSLPPLDSIL 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104546.722.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6A4_ECTSI1.980e-5497.92Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus silicul... [more]
A0A2G8L9Y1_STIJA5.950e-533.33Putative DNA repair protein n=1 Tax=Stichopus japo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR030548DNA repair protein RAD51 homologue 2PANTHERPTHR46456FAMILY NOT NAMEDcoord: 4..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104546contigEcto-sp8_S_contig104546:24..311 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104546.722.1mRNA_Ecto-sp8_S_contig104546.722.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig104546 24..311 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig104546.722.1 ID=prot_Ecto-sp8_S_contig104546.722.1|Name=mRNA_Ecto-sp8_S_contig104546.722.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=96bp
MAGQQPLRRLGLDDDLVSRLASQGLHTAGDMFSKTELQLVQSLDASREKV
VELLDYVSRRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030548RAD51B