mRNA_Ecto-sp8_S_contig104546.722.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104546.722.1
Unique NamemRNA_Ecto-sp8_S_contig104546.722.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104546.722.1 vs. uniprot
Match: D7G6A4_ECTSI (Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A4_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.980e-54
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 1 
Query:    1 MAGQQPLRRLGLDDDLVSRLASQGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSRRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL 288
            MAGQQPLRRLGLDDDLVSRLAS GLHTAGDMFSKTELQLVQSLDASREKVVELLDYVS RIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL
Sbjct:    1 MAGQQPLRRLGLDDDLVSRLASAGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSTRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL 96
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BLAST of mRNA_Ecto-sp8_S_contig104546.722.1 vs. uniprot
Match: A0A2G8L9Y1_STIJA (Putative DNA repair protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L9Y1_STIJA)

HSP 1 Score: 50.1 bits (118), Expect = 5.950e-5
Identity = 30/90 (33.33%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   19 LRRLGLDDDLVSRLASQGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSRRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL 288
            L+R+G+  +L  RL   G+ T  D  SK EL+L++    SR K+ EL++ VSR ++P Q  T  ++ ++      +   +T + PLD  L
Sbjct:    6 LQRIGVSPELAMRLKRHGICTCKDFLSKNELELMKVTGLSRVKLRELIEDVSRAVIP-QHNTVLNIYKQN-----TGLFSTSLPPLDSIL 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104546.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6A4_ECTSI1.980e-5497.92Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus silicul... [more]
A0A2G8L9Y1_STIJA5.950e-533.33Putative DNA repair protein n=1 Tax=Stichopus japo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104546contigEcto-sp8_S_contig104546:24..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score180.6
Seed ortholog evalue3.4e-43
Seed eggNOG ortholog2880.D7G6A4
Preferred nameRAD51B
Model size288
KEGG koko:K10869
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0001701,GO:0001824,GO:0001832,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007346,GO:0007596,GO:0007599,GO:0008094,GO:0008150,GO:0008152,GO:0008284,GO:0009314,GO:0009611,GO:0009628,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010971,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0040007,GO:0042060,GO:0042127,GO:0042148,GO:0042623,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0045787,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051321,GO:0051716,GO:0051726,GO:0060429,GO:0061053,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090068,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903046
Exons1
EggNOG free text desc.recombinase activity
EggNOG OGsCOG0468@1,KOG1433@2759
Cds size288
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143144.1866703-CDS-Ecto-sp8_S_contig104546:23..3111681143144.1866703-CDS-Ecto-sp8_S_contig104546:23..311Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104546 24..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104546.722.1prot_Ecto-sp8_S_contig104546.722.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104546 24..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104546.722.1

>prot_Ecto-sp8_S_contig104546.722.1 ID=prot_Ecto-sp8_S_contig104546.722.1|Name=mRNA_Ecto-sp8_S_contig104546.722.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=96bp
MAGQQPLRRLGLDDDLVSRLASQGLHTAGDMFSKTELQLVQSLDASREKV
VELLDYVSRRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDAL
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mRNA from alignment at Ecto-sp8_S_contig104546:24..311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104546.722.1 ID=mRNA_Ecto-sp8_S_contig104546.722.1|Name=mRNA_Ecto-sp8_S_contig104546.722.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104546:24..311+ (Ectocarpus species8 EcLAC_412)
ATGGCTGGCCAGCAGCCTCTCCGGCGGCTCGGTCTCGACGACGACCTCGT
TTCGCGGTTAGCTTCTCAAGGATTGCACACGGCAGGAGACATGTTCTCCA
AGACTGAGCTCCAGCTGGTGCAGAGCTTGGACGCCAGCCGCGAGAAGGTC
GTGGAGCTGCTGGACTACGTGTCGAGAAGGATTGTACCCGAGCAGGCGAA
GACAGCCGGCGACCTCCTTCGAGAACGAAGAGAGGCTGGCGCGAGCTTCT
TCGTAGCCACAGGAATTCAACCACTAGACGATGCGTTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104546:24..311+

>mRNA_Ecto-sp8_S_contig104546.722.1 ID=mRNA_Ecto-sp8_S_contig104546.722.1|Name=mRNA_Ecto-sp8_S_contig104546.722.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104546:24..311+ (Ectocarpus species8 EcLAC_412)
ATGGCTGGCCAGCAGCCTCTCCGGCGGCTCGGTCTCGACGACGACCTCGT
TTCGCGGTTAGCTTCTCAAGGATTGCACACGGCAGGAGACATGTTCTCCA
AGACTGAGCTCCAGCTGGTGCAGAGCTTGGACGCCAGCCGCGAGAAGGTC
GTGGAGCTGCTGGACTACGTGTCGAGAAGGATTGTACCCGAGCAGGCGAA
GACAGCCGGCGACCTCCTTCGAGAACGAAGAGAGGCTGGCGCGAGCTTCT
TCGTAGCCACAGGAATTCAACCACTAGACGATGCGTTG
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