prot_Ecto-sp8_S_contig10425.683.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10425.683.1
Unique Nameprot_Ecto-sp8_S_contig10425.683.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length128
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10425.683.1 vs. uniprot
Match: A0A6H5KCA9_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.470e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 
Query:   94 NMERTYHVVPDSVSYNTAMKACFRSGQNQAGLALF 128
            NMER +HVVPDSVSYNTAMKACFRSGQNQAGLALF
Sbjct:  886 NMERAHHVVPDSVSYNTAMKACFRSGQNQAGLALF 920
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10425.683.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCA9_9PHAE5.470e-1294.29PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..128
e-value: 3.6E-32
score: 113.9
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 5..119
e-value: 9.0E-9
score: 35.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 72..104
e-value: 8.4E-4
score: 17.4
coord: 2..33
e-value: 2.1E-7
score: 28.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..32
score: 11.542
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 33..67
score: 7.552
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 68..98
score: 7.541
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 104..128
score: 7.826
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 3..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10425contigEcto-sp8_S_contig10425:3345..6481 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10425.683.1mRNA_Ecto-sp8_S_contig10425.683.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10425 3345..6481 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10425.683.1 ID=prot_Ecto-sp8_S_contig10425.683.1|Name=mRNA_Ecto-sp8_S_contig10425.683.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=128bp
MFGAVIDACARRGKWEEATALLEEMTASGVAPSLRHYSSAIFACALGENP
GKGLKLLSAMRKKRVSPNSTCVNAAIHGFALLGDWEKSLEILSNMERTYH
VVPDSVSYNTAMKACFRSGQNQAGLALF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat