mRNA_Ecto-sp8_S_contig10425.683.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10425.683.1
Unique NamemRNA_Ecto-sp8_S_contig10425.683.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10425.683.1 vs. uniprot
Match: A0A6H5KCA9_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.470e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  280 NMERTYHVVPDSVSYNTAMKACFRSGQNQAGLALF 384
            NMER +HVVPDSVSYNTAMKACFRSGQNQAGLALF
Sbjct:  886 NMERAHHVVPDSVSYNTAMKACFRSGQNQAGLALF 920
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10425.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCA9_9PHAE5.470e-1294.29PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10425contigEcto-sp8_S_contig10425:3345..6481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size384
Hectar predicted targeting categoryother localisation
Exons4
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143141.3233953-CDS-Ecto-sp8_S_contig10425:3344..34131681143141.3233953-CDS-Ecto-sp8_S_contig10425:3344..3413Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10425 3345..3413 -
1681143141.3356555-CDS-Ecto-sp8_S_contig10425:4036..42001681143141.3356555-CDS-Ecto-sp8_S_contig10425:4036..4200Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10425 4037..4200 -
1681143141.3462741-CDS-Ecto-sp8_S_contig10425:5306..53881681143141.3462741-CDS-Ecto-sp8_S_contig10425:5306..5388Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10425 5307..5388 -
1681143141.3559978-CDS-Ecto-sp8_S_contig10425:6412..64811681143141.3559978-CDS-Ecto-sp8_S_contig10425:6412..6481Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10425 6413..6481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10425.683.1prot_Ecto-sp8_S_contig10425.683.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10425 3345..6481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10425.683.1

>prot_Ecto-sp8_S_contig10425.683.1 ID=prot_Ecto-sp8_S_contig10425.683.1|Name=mRNA_Ecto-sp8_S_contig10425.683.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=128bp
MFGAVIDACARRGKWEEATALLEEMTASGVAPSLRHYSSAIFACALGENP
GKGLKLLSAMRKKRVSPNSTCVNAAIHGFALLGDWEKSLEILSNMERTYH
VVPDSVSYNTAMKACFRSGQNQAGLALF
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mRNA from alignment at Ecto-sp8_S_contig10425:3345..6481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10425.683.1 ID=mRNA_Ecto-sp8_S_contig10425.683.1|Name=mRNA_Ecto-sp8_S_contig10425.683.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3137bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10425:3345..6481- (Ectocarpus species8 EcLAC_412)
ATGTTCGGCGCCGTTATTGACGCCTGCGCGAGGCGCGGCAAGTGGGAGGA
GGCCACCGCCTTGCTTGAGGTACGTTCGTTCGCGCCTGGGGCCGGTTGTG
GTTTAGGACGCGTACGCGTGTCGTTTATTGTTGTGTGTTTGTTTTTTTGA
AAGATCGTAGTTGTATTTGGGGAGCGGCCGTCCGGCGGGGCTCCTTCATT
GGCCCCGTTTGTCTCTTTTTTCGGCCGTTTCATTTTGGCGGTTTTTTTTT
GGCGGTTTTTTTGTTGGCATCGACGGTGCTGTTTTCGTTTTTCGGCCGAC
CAATGAAAAGGCCTCGCGCTCGGAGTAGGTACGAGTACCGTTTCCTCGGC
TGCCATCGACCGCGCTTAGCCTCTACGGCGGTGAGGTGAGCTTCCACCGC
TACCCCCCGTTGATCGACGCGACGCAACACCTGGGGGGTGAGTGCCCGTT
ACTGCGGCAACGTGGGGGCGGACCCACGGCGTTTCTGGTCGGGACGCGTG
CGTGTGCGTGCTCCTTTGATCAGTGCCGATAGCGCTTACGTTCCACACGA
ATCAAGTAGGAACACGGAGGATGAATGCACGCAGCTTGTTGCCGACTGTG
ACTGGGGTAGGACCGGTGCTCCCTCTCGAGAGGTATGCCCGGTCAGCTGC
CGTGGCCGCGTGGAGGGTAGAGGCGGGAGACGGGTGATATATCTTACGTG
ACGTTTGCCAGAGTTTCCACTGCCGCATCAGTAGCAATAACAGCAGCACC
CGCACCATTTAGCACCAACAACAGTAGCAATAACAGCGGCACCCGCACCA
TTTAGCAGCAACAGCGATACGAGCACCACCATAGCAGCCGCCGTATTCTG
TGCCATACTTTTTTGAAGAGGGACAAAAGACACTGCACCGCTGTGCTGTT
GCTGCTGTGCTCGGACGCGGTGTCTCATGTTCCGTGCGGTCCTTGCCCCC
CCTCCCGGTTAATCTTGTTCTTTCCCCTTCCTTGCTCGTTTTTTTATGTC
TCTCGACCGACGTGGGTCGTGCGCGGCATCATTTTCGCGGGAATGGAACT
CGTTTTCGCGGAAAATGGCGACACCATACCTCGTGGCCACCAGGAGATGA
CGGCATCCGGCGTAGCGCCGTCGCTGAGGCACTACTCTAGCGCTATTTTT
GCGTGCGCGTTGGGGGAGAACCCGGGTGAGAAAGAAAGGCTTCCATTTGT
TTGTCTTGCGGGAACACAAAATATAACCGTGTGACCACGGGTTGGAGCTG
CTACCCGGCAAAACCGTTATGAGCGCTGATTAAAATGATGAACAAGAAAC
ACAACTGTACCCACAGATGAGAGTCCAGCATGGAGTAGCGAAGATCCAGG
ATAAAATAGCGATAGTTGTCGTAGGGTTATAATATATGACCTGCCTGTGG
TCCCTACTACGTAAATCTACTGATCCTCGAGCAACATACAACGGTGAATA
GTTGTACCTGTTTTTCCCGGACTGCGAAACGTCCATTTTCATTGAACGGG
CACACGATTTGGCAAAGACCCAAGCGGGTCATATCCAGTGAATTCAAAGG
GCGGTGACAATATTGATATTCTGGTGTGTACGTTGTATTACTGTAAGACA
CGGACACACACACTCATGTTGCGCGAAATAGAAGCCGTTTCCGTGTCATG
CCCTGCGAAGATAGGTTAGCGTCGTAGCAACGGTCTGCTTTTCACCGCGG
TCTCTGCAGTGCACTGCTTCAAACAATCGGAAAAAAGTGAGTCGGGAGAA
GCGCGAAAGAGACCCGCAACACCGGGGATACGTACTATCTTGTTGGGTTG
GCAAATCAAGAGAATTCGATTGTCTCGTCGAAAATGAGAACCTCCAGACG
TTGTGTGTGCCCATGACAAGCCTTACGCCTTCTCGCGTGAAGCGGGCTTG
ACACCCCACGTCCACGACGCGGAAATAAGAGCGCTCAAAAAACATGTGGC
TTTCATTAATCGATTTTGATTGGTTCGTCCTACAACTAACTGCTGTCGTT
CGTTTGTCTCTGGGGTGAAATGAATATTTTAACGTGCACAGCCACGCAAA
ACGGCATACGTTTGCGAAAAAGCACATTCCGCCTCAGGGATTGGCTTCAA
GAACCCCGATTGGTGTTGCTGCAGAAGCGCACCGCCAGTTTCTTTCGCCG
TTTCAAAATGACCTCGTTGTCCTCCTACCAACGAACAAACCTGTCTGCTG
CTGTTTTTGCTGCCGTTTGTTTTGTGTGAAAACGACGGCACGTGCTCTGC
CAAATCCACCTCTCTCTCCCCATCTCCCCAGGGAAAGGATTGAAACTCCT
GTCCGCGATGCGGAAGAAGCGCGTGAGCCCCAACAGCACCTGTGTGAACG
CCGCCATCCACGGCTTCGCGCTGCTGGGTGACTGGGAGAAGTCTTTGGAG
ATTCTCAGCAATATGGAGAGGACCTACCACGTTGTTCCTGATTCGGTGGG
TTGTTGTTGTTGTTGTTGTTACTGTTGTTGTTACTGTTGTTGCTGCTGGT
GTTGCTGTTGTTGTCATCGTTGCTGCTGCTATTGTTGTTGCTGCTGTTGT
TGTTACAGTTGTTATTATTGTTGTTGTTTGATGTTGTAGTCTTCGCAGCA
GTACAGCATGTTTTCTGACCTTATCGAAGAGAAACAAGGTTCCGTTGTTG
CAAGCAACGCTTAGCAATGTCCAAAACCAACAACAAATCCGATGGGTTGC
CGAGTAAAACATTTTCAGATGCTGTGAGCATTCAACTCAGGTACATCGTC
ACAAGCCTGAATTCAGGTACAGCCCGTATGTACACATGCGTGTGGATCAT
CTTGAATTTCCACCGGAGGTTAATGCGGGAGGGCAGGGGCAGCAATGTCC
GTGGCCGCTATTTGTCCACAGCAATAAGATGAGCGGGCGCACGTGCATAT
GCGGCGTGTAAACACCATTTTTGTACGTACATCATTTTTGGGTTTGGCGA
CCAATATACAGGAGCTTGTGTTGGTGAAGAAGCAGCTGCTGCTTTTTCGC
CATCTCTTCACGCCTTTGCTATCGCTCCCTCCCCCCGCCCAACTCACCAT
CCCCACATGGCCCCCCAGGTAAGCTACAATACCGCCATGAAGGCCTGCTT
CCGCTCGGGCCAGAACCAGGCGGGCCTCGCCCTCTTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10425:3345..6481-

>mRNA_Ecto-sp8_S_contig10425.683.1 ID=mRNA_Ecto-sp8_S_contig10425.683.1|Name=mRNA_Ecto-sp8_S_contig10425.683.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10425:3345..6481- (Ectocarpus species8 EcLAC_412)
ATGTTCGGCGCCGTTATTGACGCCTGCGCGAGGCGCGGCAAGTGGGAGGA
GGCCACCGCCTTGCTTGAGGAGATGACGGCATCCGGCGTAGCGCCGTCGC
TGAGGCACTACTCTAGCGCTATTTTTGCGTGCGCGTTGGGGGAGAACCCG
GGGAAAGGATTGAAACTCCTGTCCGCGATGCGGAAGAAGCGCGTGAGCCC
CAACAGCACCTGTGTGAACGCCGCCATCCACGGCTTCGCGCTGCTGGGTG
ACTGGGAGAAGTCTTTGGAGATTCTCAGCAATATGGAGAGGACCTACCAC
GTTGTTCCTGATTCGGTAAGCTACAATACCGCCATGAAGGCCTGCTTCCG
CTCGGGCCAGAACCAGGCGGGCCTCGCCCTCTTC
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