prot_Ecto-sp8_S_contig10379.619.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10379.619.1
Unique Nameprot_Ecto-sp8_S_contig10379.619.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length325
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10379.619.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 1.230e-125
Identity = 264/314 (84.08%), Postives = 268/314 (85.35%), Query Frame = 0 
Query:   12 MRPSGGVSGVSRPGRGDDVDLEALQDAFLRSAERPSAKVTRAKPPTIKAGSSLGVRKEDDDPRTGKGGADTANAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLGGVPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAGSGIIGGFPAVRHRSEMGLVKLGASAAAXXXXXXXXXXXXXXXXXKGNAATERGGXXXXXXXXXXXXXXXNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 325
            MRP  GV GV+RPGRGDDVDLEALQDAFLRSAERPSAKV+RAKPPTIKAGSSLGVRKEDDDPR+G+GGADTANAP     XXXXXX                          RSLG VPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVA  GIIGGFPAVRHRSEMGLVKLG  AAA  XXXXXXXXXXXXXXX GNAATERGGXXXXXXXXXXX    NIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR
Sbjct:    1 MRPGDGVRGVARPGRGDDVDLEALQDAFLRSAERPSAKVSRAKPPTIKAGSSLGVRKEDDDPRSGRGGADTANAPRSTGGXXXXXXAVAAATAISPGTQPTRDNNNREPP--RSLG-VPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAERGIIGGFPAVRHRSEMGLVKLGVGAAAASXXXXXXXXXXXXXXXXGNAATERGGXXXXXXXXXXXVG--NIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 309
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BLAST of mRNA_Ecto-sp8_S_contig10379.619.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 3.260e-88
Identity = 211/298 (70.81%), Postives = 218/298 (73.15%), Query Frame = 0 
Query:   37 DAFLRSAERPSAKVTRAKPPTIKAGSSLGVRKEDDDPRTGKGGADTANAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLGGVPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAGSGIIGGFPAVRHRSEMGLVKLGASAAAXXXXXXXXXXXXXXXXXKGNAATERGGXXXXXXXXXXXXXXX---------NIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 325
            DA + SA R + K    +PPT+KAGSSLGVRKEDDDPR+G+GGAD ANAP                                      SLGG+ PEE EK PLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGG I  RGDKQR GLAKGAKH  A AGSGIIGGFPA RHRSEMGLVKLGA AA XXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXX         NIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR
Sbjct:   24 DATILSASRRAHK----QPPTVKAGSSLGVRKEDDDPRSGRGGADHANAPPSNGGDAAAVAVAAAPAISSGAQPTCGSNDREPP---HSLGGMAPEESEKSPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGVIVTRGDKQRLGLAKGAKHGMAAAGSGIIGGFPAARHRSEMGLVKLGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 314
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10379.619.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHI7_ECTSI1.230e-12584.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHK5_9PHAE3.260e-8870.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013930RNA polymerase II-associated protein 1, N-terminalPFAMPF08621RPAP1_Ncoord: 284..324
e-value: 3.5E-15
score: 55.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10379contigEcto-sp8_S_contig10379:1300..3076 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10379.619.1mRNA_Ecto-sp8_S_contig10379.619.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10379 1300..3076 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10379.619.1 ID=prot_Ecto-sp8_S_contig10379.619.1|Name=mRNA_Ecto-sp8_S_contig10379.619.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=325bp
PLLCTSAARIKMRPSGGVSGVSRPGRGDDVDLEALQDAFLRSAERPSAKV
TRAKPPTIKAGSSLGVRKEDDDPRTGKGGADTANAPPSTGGGAAAAAAAA
VAAATAISSGTQPTRDNNNREPPRSLGGVPPEEREKGPLTSASSPTGGMI
LNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAK
GAKHVTAVAGSGIIGGFPAVRHRSEMGLVKLGASAAAASTGAPPATAAAA
AAAAKGNAATERGGRGGAGRGGRGGGGGGNIPGDIHEENLSRISAMSPDE
IADAQQEIRAALPPGALEMLLRRGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013930RNA_pol_II_AP1_N