mRNA_Ecto-sp8_S_contig10379.619.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10379.619.1
Unique NamemRNA_Ecto-sp8_S_contig10379.619.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.619.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 1.230e-125
Identity = 264/314 (84.08%), Postives = 268/314 (85.35%), Query Frame = 1 
Query:   34 MRPSGGVSGVSRPGRGDDVDLEALQDAFLRSAERPSAKVTRAKPPTIKAGSSLGVRKEDDDPRTGKGGADTANAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLGGVPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAGSGIIGGFPAVRHRSEMGLVKLGASAAAXXXXXXXXXXXXXXXXXKGNAATERGGXXXXXXXXXXXXXXXNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 975
            MRP  GV GV+RPGRGDDVDLEALQDAFLRSAERPSAKV+RAKPPTIKAGSSLGVRKEDDDPR+G+GGADTANAP     XXXXXX                          RSLG VPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVA  GIIGGFPAVRHRSEMGLVKLG  AAA  XXXXXXXXXXXXXXX GNAATERGGXXXXXXXXXXX    NIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR
Sbjct:    1 MRPGDGVRGVARPGRGDDVDLEALQDAFLRSAERPSAKVSRAKPPTIKAGSSLGVRKEDDDPRSGRGGADTANAPRSTGGXXXXXXAVAAATAISPGTQPTRDNNNREPP--RSLG-VPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAERGIIGGFPAVRHRSEMGLVKLGVGAAAASXXXXXXXXXXXXXXXXGNAATERGGXXXXXXXXXXXVG--NIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 309
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.619.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 3.260e-88
Identity = 211/298 (70.81%), Postives = 218/298 (73.15%), Query Frame = 1 
Query:  109 DAFLRSAERPSAKVTRAKPPTIKAGSSLGVRKEDDDPRTGKGGADTANAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLGGVPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAGSGIIGGFPAVRHRSEMGLVKLGASAAAXXXXXXXXXXXXXXXXXKGNAATERGGXXXXXXXXXXXXXXX---------NIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 975
            DA + SA R + K    +PPT+KAGSSLGVRKEDDDPR+G+GGAD ANAP                                      SLGG+ PEE EK PLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGG I  RGDKQR GLAKGAKH  A AGSGIIGGFPA RHRSEMGLVKLGA AA XXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXX         NIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR
Sbjct:   24 DATILSASRRAHK----QPPTVKAGSSLGVRKEDDDPRSGRGGADHANAPPSNGGDAAAVAVAAAPAISSGAQPTCGSNDREPP---HSLGGMAPEESEKSPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGVIVTRGDKQRLGLAKGAKHGMAAAGSGIIGGFPAARHRSEMGLVKLGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 314
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10379.619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHI7_ECTSI1.230e-12584.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHK5_9PHAE3.260e-8870.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10379contigEcto-sp8_S_contig10379:1300..3076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score406.8
Seed ortholog evalue9.8e-111
Seed eggNOG ortholog2880.D8LHI7
Preferred nameRPAP1
Model size977
KEGG koko:K19496,ko:K20826
KEGG TC1.A.17.1.1,1.A.17.1.22
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030154,GO:0030880,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048869,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons2
EggNOG free text desc.transcription by RNA polymerase II
EggNOG OGsKOG4732@1,KOG4732@2759
Cds size975
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.1115491-CDS-Ecto-sp8_S_contig10379:1299..21121681143137.1115491-CDS-Ecto-sp8_S_contig10379:1299..2112Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10379 1300..2112 -
1681143137.1262984-CDS-Ecto-sp8_S_contig10379:2914..30761681143137.1262984-CDS-Ecto-sp8_S_contig10379:2914..3076Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10379 2915..3076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10379.619.1prot_Ecto-sp8_S_contig10379.619.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10379 1300..3076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10379.619.1

>prot_Ecto-sp8_S_contig10379.619.1 ID=prot_Ecto-sp8_S_contig10379.619.1|Name=mRNA_Ecto-sp8_S_contig10379.619.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=325bp
PLLCTSAARIKMRPSGGVSGVSRPGRGDDVDLEALQDAFLRSAERPSAKV
TRAKPPTIKAGSSLGVRKEDDDPRTGKGGADTANAPPSTGGGAAAAAAAA
VAAATAISSGTQPTRDNNNREPPRSLGGVPPEEREKGPLTSASSPTGGMI
LNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAK
GAKHVTAVAGSGIIGGFPAVRHRSEMGLVKLGASAAAASTGAPPATAAAA
AAAAKGNAATERGGRGGAGRGGRGGGGGGNIPGDIHEENLSRISAMSPDE
IADAQQEIRAALPPGALEMLLRRGR
back to top

mRNA from alignment at Ecto-sp8_S_contig10379:1300..3076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10379.619.1 ID=mRNA_Ecto-sp8_S_contig10379.619.1|Name=mRNA_Ecto-sp8_S_contig10379.619.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1777bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10379:1300..3076- (Ectocarpus species8 EcLAC_412)
CCACTGCTGTGCACGAGCGCAGCGAGAATAAAAATGCGCCCAAGCGGCGG
CGTTAGTGGCGTGTCAAGGCCCGGTCGTGGAGATGATGTCGACCTGGAGG
CTCTCCAGGATGCGTTTTTGAGGAGCGCAGAGAGGCCATCGGCAAAGGTT
ACTCGCGCAAAGGTGATTTGTCATTTTTTTTAAATCGCCGGCTGAATCTC
CTCTCGTTACTGCTTTGCGGTCATGAGGCGACGGCGTCGTTGATAGTGTT
GCTGCTACCGCGTTGTCTCACGGTTTGTAGGATTATTACTTTCGCCATTA
TATCTCACTACCTCCGACAGCGACCATTGGTTGCTGACTTGACTTGCGTC
TGAGGCGGCGTTATGCTGCGGCAACTAGTGTCCCAAGCCCAGCCATCCAG
GCCGGCTTTTTTTCACGGGACTGTCAGCTTTCTTCGGAGGCGTGAGGTGT
GAGGTGGGACGGCGGAGCAAAAAAAAAGGAGAGATGGACGCACGGGGGGG
GAAGCGCAATCGAAGTTGGCAAAACCGCTGAGGCATGCAGCAGGTGTACA
CCCTATAATCTGTGACTCAGCCGCTCACATATCTGTGCTGTTGCCTCCGC
TCTCGCTACATCCGTGGGTCGATGGGGAAATGGTTCGGCCGGCCGTGGCT
GACTTGCCCCCTGCTTTGCCTACGTCTACCACACCGATCGCCTTTCACAC
GTGGTGGCACTTGGTCGTATCCGGTATTATTTTTTCCTGCGTAATGCCAT
GTTCCAAGCAGTGTGCGAATCTCTTGTGTTGCCAGATTTCGCTAATAATG
CTATTATAGTACCGACACCACGTATGCATGAGTAGTGGCAGTAGGACCCC
CCCCTTCATCCCCGAATAAGAAGTGCGGGAACCACCCCATGTGATGTCAA
CGACAAGGACAAGGTCCCTGCTGACGCGACGATTCTCTCCGCATCACGAC
GTGCGCACGAGCAGCCGCCGACCATAAAAGCCGGATCCTCTCTGGGAGTG
AGGAAGGAGGACGACGACCCCCGCACCGGCAAGGGCGGCGCTGATACCGC
GAACGCGCCGCCCTCGACCGGCGGTGGCGCGGCGGCGGCGGCGGCGGCGG
CGGTAGCAGCAGCGACGGCGATTTCCTCGGGGACCCAACCAACCCGCGAC
AACAACAACCGCGAACCCCCCCGTAGTCTAGGCGGCGTGCCCCCGGAAGA
GCGCGAGAAGGGTCCGCTGACGTCGGCCTCGTCGCCAACGGGGGGTATGA
TCCTGAACGCCCCCGGGGTGGTGTCGAAGAGCGTTCGCGAGAGGGAGGTC
AAGCCGCCGGCGCCGATGAGAATTGGCGGCTTCGCCGGCGGCGCTGGCGC
TGGCGGGGCGATCGGGAGACGAGGAGACAAGCAGCGTTTCGGACTCGCGA
AGGGAGCGAAGCACGTCACGGCGGTGGCGGGGAGCGGTATCATCGGAGGG
TTCCCGGCGGTGCGCCACCGGTCAGAGATGGGCCTCGTTAAGCTCGGGGC
GAGTGCTGCAGCCGCTTCCACCGGTGCCCCCCCCGCGACCGCCGCTGCTG
CCGCTGCCGCTGCAAAGGGGAACGCAGCAACCGAAAGAGGCGGCCGTGGC
GGGGCCGGCAGAGGCGGTAGAGGCGGCGGCGGCGGCGGCAATATCCCCGG
CGACATCCACGAAGAGAACCTGTCGCGGATCTCGGCCATGTCCCCGGACG
AGATCGCCGACGCGCAGCAGGAGATTCGCGCGGCGTTGCCGCCCGGGGCG
CTCGAGATGCTCCTGCGACGGGGACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10379:1300..3076-

>mRNA_Ecto-sp8_S_contig10379.619.1 ID=mRNA_Ecto-sp8_S_contig10379.619.1|Name=mRNA_Ecto-sp8_S_contig10379.619.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10379:1300..3076- (Ectocarpus species8 EcLAC_412)
CCACTGCTGTGCACGAGCGCAGCGAGAATAAAAATGCGCCCAAGCGGCGG
CGTTAGTGGCGTGTCAAGGCCCGGTCGTGGAGATGATGTCGACCTGGAGG
CTCTCCAGGATGCGTTTTTGAGGAGCGCAGAGAGGCCATCGGCAAAGGTT
ACTCGCGCAAAGCCGCCGACCATAAAAGCCGGATCCTCTCTGGGAGTGAG
GAAGGAGGACGACGACCCCCGCACCGGCAAGGGCGGCGCTGATACCGCGA
ACGCGCCGCCCTCGACCGGCGGTGGCGCGGCGGCGGCGGCGGCGGCGGCG
GTAGCAGCAGCGACGGCGATTTCCTCGGGGACCCAACCAACCCGCGACAA
CAACAACCGCGAACCCCCCCGTAGTCTAGGCGGCGTGCCCCCGGAAGAGC
GCGAGAAGGGTCCGCTGACGTCGGCCTCGTCGCCAACGGGGGGTATGATC
CTGAACGCCCCCGGGGTGGTGTCGAAGAGCGTTCGCGAGAGGGAGGTCAA
GCCGCCGGCGCCGATGAGAATTGGCGGCTTCGCCGGCGGCGCTGGCGCTG
GCGGGGCGATCGGGAGACGAGGAGACAAGCAGCGTTTCGGACTCGCGAAG
GGAGCGAAGCACGTCACGGCGGTGGCGGGGAGCGGTATCATCGGAGGGTT
CCCGGCGGTGCGCCACCGGTCAGAGATGGGCCTCGTTAAGCTCGGGGCGA
GTGCTGCAGCCGCTTCCACCGGTGCCCCCCCCGCGACCGCCGCTGCTGCC
GCTGCCGCTGCAAAGGGGAACGCAGCAACCGAAAGAGGCGGCCGTGGCGG
GGCCGGCAGAGGCGGTAGAGGCGGCGGCGGCGGCGGCAATATCCCCGGCG
ACATCCACGAAGAGAACCTGTCGCGGATCTCGGCCATGTCCCCGGACGAG
ATCGCCGACGCGCAGCAGGAGATTCGCGCGGCGTTGCCGCCCGGGGCGCT
CGAGATGCTCCTGCGACGGGGACGG
back to top