prot_Ecto-sp8_S_contig103519.573.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig103519.573.1
Unique Nameprot_Ecto-sp8_S_contig103519.573.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length68
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103519.573.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.610e-14
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 0 
Query:   20 QAADLKGNLDTECFVFAVRHDKPKLKRVKHILDTDLHIKNCTRARSTDD 68
            +AA++KG LDTECFV AVR+DK K KRVK +LD ++HIKNCTR R  DD
Sbjct:   66 KAAEVKGKLDTECFVLAVRNDKAKFKRVKELLDMNVHIKNCTRQRYVDD 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103519.573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXB5_ECTSI1.610e-1467.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 23..58
e-value: 7.2E-5
score: 22.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103519contigEcto-sp8_S_contig103519:297..500 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103519.573.1mRNA_Ecto-sp8_S_contig103519.573.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig103519 297..500 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig103519.573.1 ID=prot_Ecto-sp8_S_contig103519.573.1|Name=mRNA_Ecto-sp8_S_contig103519.573.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=68bp
MFVSLEKSMVIDIFSSLKYQAADLKGNLDTECFVFAVRHDKPKLKRVKHI
LDTDLHIKNCTRARSTDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13