prot_Ecto-sp8_S_contig103511.572.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp8_S_contig103511.572.1
Unique Name	prot_Ecto-sp8_S_contig103511.572.1
Type	polypeptide
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length	129

Homology

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: RL40_DROME (Ubiquitin-60S ribosomal protein L40 n=72 Tax=Endopterygota TaxID=33392 RepID=RL40_DROME)

HSP 1 Score: 251 bits (640), Expect = 2.850e-84
Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR+LAQKYNCDKMICRKCYARLHPRATNCRKK CGHT+NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 128

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A6J1SGB0_FRAOC (Ubiquitin-60S ribosomal protein L40 n=52 Tax=Bilateria TaxID=33213 RepID=A0A6J1SGB0_FRAOC)

HSP 1 Score: 249 bits (636), Expect = 1.160e-83
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEP+LR+LA KYNCDKMICRKCYARLHPRATNCRKK CGHT+NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPTLRILAMKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 128

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A1D2MX08_ORCCI (Ubiquitin-60S ribosomal protein L40 n=8 Tax=Hexapoda TaxID=6960 RepID=A0A1D2MX08_ORCCI)

HSP 1 Score: 249 bits (636), Expect = 1.160e-83
Identity = 122/128 (95.31%), Postives = 127/128 (99.22%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEP+LR+LAQKYNCDKMICRKCYARLHPRATNCRKK CGHT+N+RPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPTLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNIRPKKKLK 128

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A0K8W8A4_BACLA (Ubiquitin-60S ribosomal protein L40 n=10 Tax=Bilateria TaxID=33213 RepID=A0A0K8W8A4_BACLA)

HSP 1 Score: 249 bits (636), Expect = 1.160e-83
Identity = 122/128 (95.31%), Postives = 127/128 (99.22%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR+LAQKYNCDK+ICRKCYARLHPRATNCRKK CGHT+NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKVICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 128

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: D2A1G0_TRICA (Ubiquitin-60S ribosomal protein L40 n=41 Tax=cellular organisms TaxID=131567 RepID=D2A1G0_TRICA)

HSP 1 Score: 249 bits (636), Expect = 1.200e-83
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRK  CGHT+NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKTKCGHTNNLRPKKKLK 128

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: UPI001658B3DB (ubiquitin-60S ribosomal protein L40 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI001658B3DB)

HSP 1 Score: 251 bits (640), Expect = 1.210e-83
Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR+LAQKYNCDKMICRKCYARLHPRATNCRKK CGHT+NLRPKKKLK
Sbjct:   44 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 171

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: Q4GX78_SCALT (Ubiquitin-60S ribosomal protein L40 n=23 Tax=Bilateria TaxID=33213 RepID=Q4GX78_SCALT)

HSP 1 Score: 249 bits (635), Expect = 1.650e-83
Identity = 122/128 (95.31%), Postives = 126/128 (98.44%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR+LAQKYNCDKMICRKCYARLHPRATNCRK  CGHT+NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKSKCGHTNNLRPKKKLK 128

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A4Z2B9S1_9TELE (Ubiquitin-60S ribosomal protein L40 n=16 Tax=Chordata TaxID=7711 RepID=A0A4Z2B9S1_9TELE)

HSP 1 Score: 249 bits (635), Expect = 2.230e-83
Identity = 122/128 (95.31%), Postives = 126/128 (98.44%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR+LAQKYNCDKMICRKCYARLHPRA NCRKK CGHT+NLRPKKKLK
Sbjct:   10 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRMLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKLK 137

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A3Q1CL89_AMPOC (Ubiquitin-60S ribosomal protein L40 n=7 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q1CL89_AMPOC)

HSP 1 Score: 248 bits (634), Expect = 2.340e-83
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR LAQKYNCDKM+CRKCYARLHPRA NCRKK CGHTSN+RPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMVCRKCYARLHPRAVNCRKKKCGHTSNIRPKKKLK 128

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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: Q93116_ACRMI (Ubiquitin-60S ribosomal protein L40 n=3 Tax=Astrocoeniina TaxID=123757 RepID=Q93116_ACRMI)

HSP 1 Score: 248 bits (633), Expect = 3.440e-83
Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0

Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 128
            MQIFVKTLTGKTITLEVEPSDSIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRA NCRKK CGH++NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKLK 128

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
RL40_DROME	2.850e-84	96.09	Ubiquitin-60S ribosomal protein L40 n=72 Tax=Endop...	[more]
A0A6J1SGB0_FRAOC	1.160e-83	96.09	Ubiquitin-60S ribosomal protein L40 n=52 Tax=Bilat...	[more]
A0A1D2MX08_ORCCI	1.160e-83	95.31	Ubiquitin-60S ribosomal protein L40 n=8 Tax=Hexapo...	[more]
A0A0K8W8A4_BACLA	1.160e-83	95.31	Ubiquitin-60S ribosomal protein L40 n=10 Tax=Bilat...	[more]
D2A1G0_TRICA	1.200e-83	96.09	Ubiquitin-60S ribosomal protein L40 n=41 Tax=cellu...	[more]
UPI001658B3DB	1.210e-83	96.09	ubiquitin-60S ribosomal protein L40 isoform X1 n=1...	[more]
Q4GX78_SCALT	1.650e-83	95.31	Ubiquitin-60S ribosomal protein L40 n=23 Tax=Bilat...	[more]
A0A4Z2B9S1_9TELE	2.230e-83	95.31	Ubiquitin-60S ribosomal protein L40 n=16 Tax=Chord...	[more]
A0A3Q1CL89_AMPOC	2.340e-83	95.31	Ubiquitin-60S ribosomal protein L40 n=7 Tax=Percom...	[more]
Q93116_ACRMI	3.440e-83	96.09	Ubiquitin-60S ribosomal protein L40 n=3 Tax=Astroc...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 124..128
None	No IPR available	GENE3D	3.10.20.90		coord: 1..77 e-value: 3.4E-44 score: 150.6
None	No IPR available	PANTHER	PTHR10666:SF281	UBIQUITIN A-52 RESIDUE RIBOSOMAL PROTEIN FUSION PRODUCT 1	coord: 1..128
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..128
IPR019956	Ubiquitin	PRINTS	PR00348	UBIQUITIN	coord: 32..52 score: 95.05 coord: 11..31 score: 80.53 coord: 53..74 score: 92.03
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 1..72 e-value: 1.3E-35 score: 134.4
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 3..74 e-value: 2.8E-34 score: 116.7
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30.626
IPR001975	Ribosomal protein L40e	SMART	SM01377	Ribosomal_L40e_3	coord: 77..128 e-value: 1.6E-31 score: 120.7
IPR001975	Ribosomal protein L40e	PFAM	PF01020	Ribosomal_L40e	coord: 78..127 e-value: 3.3E-31 score: 106.9
IPR038587	Ribosomal protein L40e superfamily	GENE3D	2.20.28.70		coord: 78..128 e-value: 1.6E-32 score: 113.1
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..96

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig103511	contig	Ecto-sp8_S_contig103511:97..483 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig103511.572.1	mRNA_Ecto-sp8_S_contig103511.572.1	Ectocarpus species8 EcLAC_412	mRNA	Ecto-sp8_S_contig103511 97..498 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp8_S_contig103511.572.1 ID=prot_Ecto-sp8_S_contig103511.572.1|Name=mRNA_Ecto-sp8_S_contig103511.572.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCY
ARLHPRATNCRKKACGHTSNLRPKKKLK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019956	Ubiquitin
IPR000626	Ubiquitin_dom
IPR001975	Ribosomal_L40e
IPR038587	L40e_sf
IPR019954	Ubiquitin_CS
IPR029071	Ubiquitin-like_domsf