mRNA_Ecto-sp8_S_contig103511.572.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103511.572.1
Unique NamemRNA_Ecto-sp8_S_contig103511.572.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A4Z2B9S1_9TELE (Ubiquitin-60S ribosomal protein L40 n=16 Tax=Chordata TaxID=7711 RepID=A0A4Z2B9S1_9TELE)

HSP 1 Score: 253 bits (646), Expect = 5.750e-85
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 1 
Query:    4 RPAEMQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            +PA MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR+LAQKYNCDKMICRKCYARLHPRA NCRKK CGHT+NLRPKKKLK
Sbjct:    6 QPANMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRMLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKLK 137
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: W5M2A7_LEPOC (Ubiquitin-60S ribosomal protein L40 n=9 Tax=cellular organisms TaxID=131567 RepID=W5M2A7_LEPOC)

HSP 1 Score: 252 bits (644), Expect = 1.990e-84
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 1 
Query:    4 RPAEMQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            +PA+MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR LAQKYNCDKMICRKCYARLHPRA NCRKK CGHT+NLRPKKKLK
Sbjct:   22 KPAKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKLK 153
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: RL40_DROME (Ubiquitin-60S ribosomal protein L40 n=72 Tax=Endopterygota TaxID=33392 RepID=RL40_DROME)

HSP 1 Score: 250 bits (639), Expect = 4.970e-84
Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 1 
Query:   16 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR+LAQKYNCDKMICRKCYARLHPRATNCRKK CGHT+NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 128
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: UPI001BE1112A (ubiquitin-60S ribosomal protein L40 n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001BE1112A)

HSP 1 Score: 251 bits (641), Expect = 5.510e-84
Identity = 124/131 (94.66%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:    7 PAEMQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            P+ MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR LAQKYNCDKMICRKCYARLHPRA NCRKK CGHTSNLRPKKKLK
Sbjct:   22 PSNMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTSNLRPKKKLK 152
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A673WYA8_SALTR (Ubiquitin-60S ribosomal protein L40 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A673WYA8_SALTR)

HSP 1 Score: 251 bits (640), Expect = 6.620e-84
Identity = 123/133 (92.48%), Postives = 129/133 (96.99%), Query Frame = 1 
Query:    1 KRPAEMQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            ++P +MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR LAQKYNCDKMICRKCYARLHPRA NCRKK CGHT+NLRPKKKLK
Sbjct:   15 QQPTKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKLK 147
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A673WVH4_SALTR (Ubiquitin-60S ribosomal protein L40 n=12 Tax=Protacanthopterygii TaxID=41705 RepID=A0A673WVH4_SALTR)

HSP 1 Score: 250 bits (639), Expect = 6.940e-84
Identity = 123/132 (93.18%), Postives = 128/132 (96.97%), Query Frame = 1 
Query:    4 RPAEMQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            +P +MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR LAQKYNCDKMICRKCYARLHPRA NCRKK CGHT+NLRPKKKLK
Sbjct:    7 QPTKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKLK 138
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A8C7IW00_ONCKI (Ubiquitin-60S ribosomal protein L40 n=3 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7IW00_ONCKI)

HSP 1 Score: 250 bits (639), Expect = 1.320e-83
Identity = 123/132 (93.18%), Postives = 128/132 (96.97%), Query Frame = 1 
Query:    4 RPAEMQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            +P+ MQIFVKTLTGKTITL+VEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR LAQKYNCDKMICRKCYARLHPRA NCRKK CGHTSNLRPKKKLK
Sbjct:   22 QPSNMQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTSNLRPKKKLK 153
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A6J1SGB0_FRAOC (Ubiquitin-60S ribosomal protein L40 n=52 Tax=Bilateria TaxID=33213 RepID=A0A6J1SGB0_FRAOC)

HSP 1 Score: 249 bits (635), Expect = 2.020e-83
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 1 
Query:   16 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEP+LR+LA KYNCDKMICRKCYARLHPRATNCRKK CGHT+NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPTLRILAMKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 128
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A1D2MX08_ORCCI (Ubiquitin-60S ribosomal protein L40 n=8 Tax=Hexapoda TaxID=6960 RepID=A0A1D2MX08_ORCCI)

HSP 1 Score: 249 bits (635), Expect = 2.020e-83
Identity = 122/128 (95.31%), Postives = 127/128 (99.22%), Query Frame = 1 
Query:   16 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEP+LR+LAQKYNCDKMICRKCYARLHPRATNCRKK CGHT+N+RPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPTLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNIRPKKKLK 128
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BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Match: A0A0K8W8A4_BACLA (Ubiquitin-60S ribosomal protein L40 n=10 Tax=Bilateria TaxID=33213 RepID=A0A0K8W8A4_BACLA)

HSP 1 Score: 249 bits (635), Expect = 2.020e-83
Identity = 122/128 (95.31%), Postives = 127/128 (99.22%), Query Frame = 1 
Query:   16 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRATNCRKKACGHTSNLRPKKKLK 399
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+IEPSLR+LAQKYNCDK+ICRKCYARLHPRATNCRKK CGHT+NLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKVICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103511.572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Z2B9S1_9TELE5.750e-8593.94Ubiquitin-60S ribosomal protein L40 n=16 Tax=Chord... [more]
W5M2A7_LEPOC1.990e-8493.94Ubiquitin-60S ribosomal protein L40 n=9 Tax=cellul... [more]
RL40_DROME4.970e-8496.09Ubiquitin-60S ribosomal protein L40 n=72 Tax=Endop... [more]
UPI001BE1112A5.510e-8494.66ubiquitin-60S ribosomal protein L40 n=1 Tax=Corego... [more]
A0A673WYA8_SALTR6.620e-8492.48Ubiquitin-60S ribosomal protein L40 n=2 Tax=Eutele... [more]
A0A673WVH4_SALTR6.940e-8493.18Ubiquitin-60S ribosomal protein L40 n=12 Tax=Prota... [more]
A0A8C7IW00_ONCKI1.320e-8393.18Ubiquitin-60S ribosomal protein L40 n=3 Tax=Oncorh... [more]
A0A6J1SGB0_FRAOC2.020e-8396.09Ubiquitin-60S ribosomal protein L40 n=52 Tax=Bilat... [more]
A0A1D2MX08_ORCCI2.020e-8395.31Ubiquitin-60S ribosomal protein L40 n=8 Tax=Hexapo... [more]
A0A0K8W8A4_BACLA2.020e-8395.31Ubiquitin-60S ribosomal protein L40 n=10 Tax=Bilat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103511contigEcto-sp8_S_contig103511:97..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score252.3
Seed ortholog evalue1.2e-64
Seed eggNOG ortholog43151.ADAC006215-PA
Preferred nameRpL40
Model size402
KEGG koko:K02927
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006464,GO:0006508,GO:0006511,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016567,GO:0019538,GO:0019941,GO:0022625,GO:0022626,GO:0030163,GO:0031386,GO:0032446,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Ribosomal L40e family
EggNOG OGs39ZU5@33154,3BPCG@33208,3D67K@33213,3SMAS@50557,41YX3@6656,452XT@7147,45HW1@7148,COG1552@1,KOG0003@2759
Cds size387
COG Functional cat.J
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.175248-CDS-Ecto-sp8_S_contig103511:96..4831681143134.175248-CDS-Ecto-sp8_S_contig103511:96..483Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103511 97..483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.1857646-UTR-Ecto-sp8_S_contig103511:483..4981681143134.1857646-UTR-Ecto-sp8_S_contig103511:483..498Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig103511 484..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103511.572.1prot_Ecto-sp8_S_contig103511.572.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103511 97..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103511.572.1

>prot_Ecto-sp8_S_contig103511.572.1 ID=prot_Ecto-sp8_S_contig103511.572.1|Name=mRNA_Ecto-sp8_S_contig103511.572.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCY
ARLHPRATNCRKKACGHTSNLRPKKKLK*
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mRNA from alignment at Ecto-sp8_S_contig103511:97..498-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103511.572.1 ID=mRNA_Ecto-sp8_S_contig103511.572.1|Name=mRNA_Ecto-sp8_S_contig103511.572.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103511:97..498- (Ectocarpus species8 EcLAC_412)
AAGAGACCAGCAGAGATGCAAATCTTCGTGAAGACCCTCACGGGCAAGAC
CATCACCCTTGAGGTCGAGCCCAGCGACTCCATCGAGAACGTTAAGGCCA
AGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGAGGTTGATCTTC
GCTGGCAAGCAGCTGGAGGATGGCAGGACTCTGTCAGATTACAACATCCA
GAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTGCGTGGAGGAGTTATCG
AGCCCTCCCTGCGTCTGCTGGCCCAGAAGTACAACTGCGACAAGATGATC
TGCAGAAAGTGCTACGCCAGGCTTCACCCCAGGGCCACCAACTGCCGCAA
GAAGGCCTGTGGTCACACCTCCAACCTCAGACCCAAGAAGAAGCTGAAGT
AA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103511:97..498-

>mRNA_Ecto-sp8_S_contig103511.572.1 ID=mRNA_Ecto-sp8_S_contig103511.572.1|Name=mRNA_Ecto-sp8_S_contig103511.572.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103511:97..498- (Ectocarpus species8 EcLAC_412)
ATGCAAATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGT
CGAGCCCAGCGACTCCATCGAGAACGTTAAGGCCAAGATCCAGGACAAGG
AGGGAATCCCCCCAGATCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTG
GAGGATGGCAGGACTCTGTCAGATTACAACATCCAGAAGGAGTCCACCCT
TCACTTGGTGCTCCGTCTGCGTGGAGGAGTTATCGAGCCCTCCCTGCGTC
TGCTGGCCCAGAAGTACAACTGCGACAAGATGATCTGCAGAAAGTGCTAC
GCCAGGCTTCACCCCAGGGCCACCAACTGCCGCAAGAAGGCCTGTGGTCA
CACCTCCAACCTCAGACCCAAGAAGAAGCTGAAGTAA
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