prot_Ecto-sp8_S_contig10344.558.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10344.558.1
Unique Nameprot_Ecto-sp8_S_contig10344.558.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length209
Homology
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: D7FUV3_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV3_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 1.280e-128
Identity = 196/209 (93.78%), Postives = 196/209 (93.78%), Query Frame = 0
Query:    1 MVTTNISSRAPMSRERLTGSGTGAASREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 209
            MVTTNISSRAPMSRERLTGSGTGA  REVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQ           DKVGDFSGFTPDKLLLETEKALSGTELYDPH
Sbjct:    1 MVTTNISSRAPMSRERLTGSGTGAIGREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQ-----------DKVGDFSGFTPDKLLLETEKALSGTELYDPH 198          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A6H5JJB3_9PHAE (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB3_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 2.610e-116
Identity = 190/209 (90.91%), Postives = 194/209 (92.82%), Query Frame = 0
Query:    1 MVTTNISSRAPMSRERLTGSGTGAASREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 209
            MVTTNIS+RAPMSRE L GS T A SREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDG+NLHVTRTFSRKNNSSNWHINGRSHSTKEVEN +RALGIQV+NLCTMLPQAS        QDKVGDFSGFTPDKLLLETEKALS TELYDPH
Sbjct:    1 MVTTNISNRAPMSREMLMGSSTCAPSREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGSNLHVTRTFSRKNNSSNWHINGRSHSTKEVENMVRALGIQVNNLCTMLPQAS--------QDKVGDFSGFTPDKLLLETEKALSSTELYDPH 201          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: D7FWM5_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM5_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 3.440e-45
Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0
Query:    1 MVTTNISSRAPMSRERLTGSGTGAASREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPK 86
            MVTTNISSRAPMSRERLTGSGTGA   EVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGS K
Sbjct:    1 MVTTNISSRAPMSRERLTGSGTGAIGGEVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSLK 86          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: UPI000644BC32 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BC32)

HSP 1 Score: 162 bits (411), Expect = 1.270e-42
Identity = 88/176 (50.00%), Postives = 118/176 (67.05%), Query Frame = 0
Query:   34 KGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 209
            KGSIV +K+ NF+ Y + + V GPRLN+V+GPNGSGKS++VCA+ALGLGG P +LGRA  +S F+ HG +E A + +EL++P GN     R   RK+NSS + +NG   + +E+  KI+ L IQVDNLC  LPQ           DKV  F+  TP +LL+ETEKA+   +LYD H
Sbjct:   73 KGSIVRVKLTNFVTYTELEFVPGPRLNVVIGPNGSGKSSIVCALALGLGGGPALLGRAKQVSEFIKHG-EERAIIEIELFVPTGN--VTVRRVIRKDNSSEYRVNGAKATAQELHEKIKELNIQVDNLCQFLPQ-----------DKVVGFAKMTPTELLVETEKAIGLYDLYDNH 234          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A7S2LL45_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LL45_9STRA)

HSP 1 Score: 160 bits (405), Expect = 5.890e-42
Identity = 90/186 (48.39%), Postives = 118/186 (63.44%), Query Frame = 0
Query:   29 VSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNN-------LHVTRTFSRKN-NSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELY 206
            V  +K GSI+ +KM NFL YK+ +   GPRLN+V GPNGSGKST++CA+ LGLGG P +LGRAD++  F+MH  +E A + +EL   D           H+ R   R N  +S+W+IN    S KEV+  +R+ G+QVDNLCT LPQ           D+VG FSGFT   LL+ET+KAL G +LY
Sbjct:   10 VGEYKPGSILRVKMVNFLTYKEVEVCPGPRLNVVCGPNGSGKSTILCALCLGLGGQPNLLGRADDVKLFIMHE-EESAEIEIELAPKDPTQPHHDIIKRHIIRAKGRSNAGASDWYINDEKSSHKEVKELVRSYGVQVDNLCTFLPQ-----------DRVGSFSGFTAQSLLVETQKALDG-DLY 182          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A1X2IAJ7_9FUNG (Structural maintenance of chromosomes protein 5 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IAJ7_9FUNG)

HSP 1 Score: 157 bits (398), Expect = 7.220e-41
Identity = 83/179 (46.37%), Postives = 119/179 (66.48%), Query Frame = 0
Query:   31 GWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 209
            G+ +GSIV + ++NF+ Y   +   GP+LNM++GPNG+GKST+VCA+ALGLGGSP +LGRA N+S FV  G +E+AS+ +EL   DG N+ + R  ++ NNSS W +NGR+ ++++V + I +L IQVDNLC  LPQ           DKV +F+  TP  LL  T+ A+   +L   H
Sbjct:   80 GYVEGSIVKMVLRNFVTYDYCEFTPGPQLNMIIGPNGTGKSTIVCAVALGLGGSPLLLGRARNISDFVKTG-EEEASIQIELKKVDGQNVVIQRKINKSNNSSGWKLNGRTSTSRDVLSVIASLNIQVDNLCQFLPQ-----------DKVAEFAQLTPPLLLSRTQVAVGDKDLVKWH 246          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: D7FWM7_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM7_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.420e-40
Identity = 74/93 (79.57%), Postives = 78/93 (83.87%), Query Frame = 0
Query:   99 MHGVK-EDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPD 190
            M+GVK EDASV VELYMPDGNNLHVTRT SRKNNSSNWHINGRS+S KEVE+KIRALGIQVDNLCTMLPQ           DK+GDFSGFTPD
Sbjct:    1 MYGVKREDASVMVELYMPDGNNLHVTRTCSRKNNSSNWHINGRSYSGKEVESKIRALGIQVDNLCTMLPQ-----------DKIGDFSGFTPD 82          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A835YL14_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL14_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.480e-40
Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 0
Query:   35 GSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPD-GNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTP 189
            G+I  + M NFL Y D     GP+LN+V+GPNG+GKS++VCA+ LGL G+PK LGR++NL+ F+MH  ++ A V VEL + + G  +   R+F R    S W ++GR+H  K V+ KI ALGIQVDNLCT LPQ           D+VGDFSG+ P
Sbjct:    4 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHE-QQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQ-----------DRVGDFSGYNP 147          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A1Y1YDZ8_9FUNG (Structural maintenance of chromosomes protein 5 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YDZ8_9FUNG)

HSP 1 Score: 156 bits (395), Expect = 1.810e-40
Identity = 95/205 (46.34%), Postives = 125/205 (60.98%), Query Frame = 0
Query:    8 SRAPMSRERLTGS--GTGAASREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELY-MPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 209
            S  P+ R+RL+ S   +     E   + +GSIV + +KNF+ Y   +   GP LNM++GPNG+GKST+VCAIALGLGGSP +LGRA  +S FV HG  E AS+ +EL   P   N+ + R   R NNSS W ING+  + KE+  +I AL IQVDNLC  LPQ           DKV +F+  +P +LL ET+KA    +L D H
Sbjct:   16 SEEPVKRQRLSESLQRSSILHSEQDEYLEGSIVRVALKNFVTYDACEFFPGPNLNMIIGPNGTGKSTIVCAIALGLGGSPSLLGRAKEISEFVKHG-HERASIEIELKGSPRIGNIIIKRQIKRSNNSSVWKINGQPATQKEILTEINALHIQVDNLCQFLPQ-----------DKVCEFAQMSPSELLKETQKAAGEEDLTDWH 208          
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: F0ZCB0_DICPU (Structural maintenance of chromosomes protein 5 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZCB0_DICPU)

HSP 1 Score: 154 bits (390), Expect = 8.540e-40
Identity = 82/179 (45.81%), Postives = 114/179 (63.69%), Query Frame = 0
Query:   31 GWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 209
            G+ KGSIV +K+ NF+ Y D +   GPRLN+V+GPNGSGKS++VCAIALGLGGSP +LGR   L  FV  G      V +EL+ PDG N  + R   ++ NS ++ +NG++ +  ++  +I+ L IQV+NLC  LPQ           DKV  F+  +P +LLLETEKA+    +Y+ H
Sbjct:   64 GYVKGSIVRIKLNNFVTYSDVEFRPGPRLNVVIGPNGSGKSSIVCAIALGLGGSPNLLGRQKQLGDFVKRGTMS-GFVEIELFNPDGENFIIKRDLKKEGNSGDFKLNGKNITKADLLARIKELNIQVENLCQFLPQ-----------DKVVGFASMSPTELLLETEKAIGVDNMYENH 230          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUV3_ECTSI1.280e-12893.78Structural maintenance of chromosomes protein 5 n=... [more]
A0A6H5JJB3_9PHAE2.610e-11690.91Structural maintenance of chromosomes protein 5 n=... [more]
D7FWM5_ECTSI3.440e-4595.35Structural maintenance of chromosomes protein 5 n=... [more]
UPI000644BC321.270e-4250.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S2LL45_9STRA5.890e-4248.39Structural maintenance of chromosomes protein 5 (F... [more]
A0A1X2IAJ7_9FUNG7.220e-4146.37Structural maintenance of chromosomes protein 5 n=... [more]
D7FWM7_ECTSI1.420e-4079.57Structural maintenance of chromosomes protein 5 n=... [more]
A0A835YL14_9STRA1.480e-4049.36Structural maintenance of chromosomes protein 5 (F... [more]
A0A1Y1YDZ8_9FUNG1.810e-4046.34Structural maintenance of chromosomes protein 5 n=... [more]
F0ZCB0_DICPU8.540e-4045.81Structural maintenance of chromosomes protein 5 n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 37..161
e-value: 1.0E-15
score: 57.8
NoneNo IPR availableGENE3D3.40.50.300coord: 37..207
e-value: 8.0E-28
score: 99.9
IPR027131Structural maintenance of chromosomes protein 5PANTHERPTHR45916FAMILY NOT NAMEDcoord: 18..209
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 37..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10344contigEcto-sp8_S_contig10344:897..4902 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10344.558.1mRNA_Ecto-sp8_S_contig10344.558.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10344 897..4902 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10344.558.1 ID=prot_Ecto-sp8_S_contig10344.558.1|Name=mRNA_Ecto-sp8_S_contig10344.558.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=209bp
MVTTNISSRAPMSRERLTGSGTGAASREVSGWKKGSIVSLKMKNFLVYKD
AKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMH
GVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENK
IRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKAL
SGTELYDPH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027131SMC5
IPR027417P-loop_NTPase