mRNA_Ecto-sp8_S_contig10344.558.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: D7FUV3_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV3_ECTSI) HSP 1 Score: 378 bits (971), Expect = 1.280e-128 Identity = 196/209 (93.78%), Postives = 196/209 (93.78%), Query Frame = 1
Query: 1 MVTTNISSRAPMSRERLTGSGTGAASREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 627
MVTTNISSRAPMSRERLTGSGTGA REVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQ DKVGDFSGFTPDKLLLETEKALSGTELYDPH
Sbjct: 1 MVTTNISSRAPMSRERLTGSGTGAIGREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQ-----------DKVGDFSGFTPDKLLLETEKALSGTELYDPH 198
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A6H5JJB3_9PHAE (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB3_9PHAE) HSP 1 Score: 365 bits (938), Expect = 2.610e-116 Identity = 190/209 (90.91%), Postives = 194/209 (92.82%), Query Frame = 1
Query: 1 MVTTNISSRAPMSRERLTGSGTGAASREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 627
MVTTNIS+RAPMSRE L GS T A SREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDG+NLHVTRTFSRKNNSSNWHINGRSHSTKEVEN +RALGIQV+NLCTMLPQAS QDKVGDFSGFTPDKLLLETEKALS TELYDPH
Sbjct: 1 MVTTNISNRAPMSREMLMGSSTCAPSREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGSNLHVTRTFSRKNNSSNWHINGRSHSTKEVENMVRALGIQVNNLCTMLPQAS--------QDKVGDFSGFTPDKLLLETEKALSSTELYDPH 201
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: D7FWM5_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM5_ECTSI) HSP 1 Score: 154 bits (390), Expect = 3.440e-45 Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 1
Query: 1 MVTTNISSRAPMSRERLTGSGTGAASREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPK 258
MVTTNISSRAPMSRERLTGSGTGA EVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGS K
Sbjct: 1 MVTTNISSRAPMSRERLTGSGTGAIGGEVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSLK 86
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: UPI000644BC32 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BC32) HSP 1 Score: 162 bits (411), Expect = 1.270e-42 Identity = 88/176 (50.00%), Postives = 118/176 (67.05%), Query Frame = 1
Query: 100 KGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 627
KGSIV +K+ NF+ Y + + V GPRLN+V+GPNGSGKS++VCA+ALGLGG P +LGRA +S F+ HG +E A + +EL++P GN R RK+NSS + +NG + +E+ KI+ L IQVDNLC LPQ DKV F+ TP +LL+ETEKA+ +LYD H
Sbjct: 73 KGSIVRVKLTNFVTYTELEFVPGPRLNVVIGPNGSGKSSIVCALALGLGGGPALLGRAKQVSEFIKHG-EERAIIEIELFVPTGN--VTVRRVIRKDNSSEYRVNGAKATAQELHEKIKELNIQVDNLCQFLPQ-----------DKVVGFAKMTPTELLVETEKAIGLYDLYDNH 234
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A7S2LL45_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LL45_9STRA) HSP 1 Score: 160 bits (405), Expect = 5.890e-42 Identity = 90/186 (48.39%), Postives = 118/186 (63.44%), Query Frame = 1
Query: 85 VSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNN-------LHVTRTFSRKN-NSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELY 618
V +K GSI+ +KM NFL YK+ + GPRLN+V GPNGSGKST++CA+ LGLGG P +LGRAD++ F+MH +E A + +EL D H+ R R N +S+W+IN S KEV+ +R+ G+QVDNLCT LPQ D+VG FSGFT LL+ET+KAL G +LY
Sbjct: 10 VGEYKPGSILRVKMVNFLTYKEVEVCPGPRLNVVCGPNGSGKSTILCALCLGLGGQPNLLGRADDVKLFIMHE-EESAEIEIELAPKDPTQPHHDIIKRHIIRAKGRSNAGASDWYINDEKSSHKEVKELVRSYGVQVDNLCTFLPQ-----------DRVGSFSGFTAQSLLVETQKALDG-DLY 182
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A1X2IAJ7_9FUNG (Structural maintenance of chromosomes protein 5 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IAJ7_9FUNG) HSP 1 Score: 157 bits (398), Expect = 7.220e-41 Identity = 83/179 (46.37%), Postives = 119/179 (66.48%), Query Frame = 1
Query: 91 GWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 627
G+ +GSIV + ++NF+ Y + GP+LNM++GPNG+GKST+VCA+ALGLGGSP +LGRA N+S FV G +E+AS+ +EL DG N+ + R ++ NNSS W +NGR+ ++++V + I +L IQVDNLC LPQ DKV +F+ TP LL T+ A+ +L H
Sbjct: 80 GYVEGSIVKMVLRNFVTYDYCEFTPGPQLNMIIGPNGTGKSTIVCAVALGLGGSPLLLGRARNISDFVKTG-EEEASIQIELKKVDGQNVVIQRKINKSNNSSGWKLNGRTSTSRDVLSVIASLNIQVDNLCQFLPQ-----------DKVAEFAQLTPPLLLSRTQVAVGDKDLVKWH 246
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: D7FWM7_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM7_ECTSI) HSP 1 Score: 142 bits (359), Expect = 1.420e-40 Identity = 74/93 (79.57%), Postives = 78/93 (83.87%), Query Frame = 1
Query: 295 MHGVK-EDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPD 570
M+GVK EDASV VELYMPDGNNLHVTRT SRKNNSSNWHINGRS+S KEVE+KIRALGIQVDNLCTMLPQ DK+GDFSGFTPD
Sbjct: 1 MYGVKREDASVMVELYMPDGNNLHVTRTCSRKNNSSNWHINGRSYSGKEVESKIRALGIQVDNLCTMLPQ-----------DKIGDFSGFTPD 82
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A835YL14_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL14_9STRA) HSP 1 Score: 144 bits (363), Expect = 1.480e-40 Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 1
Query: 103 GSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPD-GNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTP 567
G+I + M NFL Y D GP+LN+V+GPNG+GKS++VCA+ LGL G+PK LGR++NL+ F+MH ++ A V VEL + + G + R+F R S W ++GR+H K V+ KI ALGIQVDNLCT LPQ D+VGDFSG+ P
Sbjct: 4 GAITRVAMHNFLTYADVNFKPGPKLNIVMGPNGAGKSSIVCAMVLGLAGNPKFLGRSENLNDFIMHE-QQHAWVEVELEVHEVGKRVVFRRSFERNVKGSKWQLDGRTHPEKHVKEKIAALGIQVDNLCTFLPQ-----------DRVGDFSGYNP 147
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: A0A1Y1YDZ8_9FUNG (Structural maintenance of chromosomes protein 5 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YDZ8_9FUNG) HSP 1 Score: 156 bits (395), Expect = 1.810e-40 Identity = 95/205 (46.34%), Postives = 125/205 (60.98%), Query Frame = 1
Query: 22 SRAPMSRERLTGS--GTGAASREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELY-MPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 627
S P+ R+RL+ S + E + +GSIV + +KNF+ Y + GP LNM++GPNG+GKST+VCAIALGLGGSP +LGRA +S FV HG E AS+ +EL P N+ + R R NNSS W ING+ + KE+ +I AL IQVDNLC LPQ DKV +F+ +P +LL ET+KA +L D H
Sbjct: 16 SEEPVKRQRLSESLQRSSILHSEQDEYLEGSIVRVALKNFVTYDACEFFPGPNLNMIIGPNGTGKSTIVCAIALGLGGSPSLLGRAKEISEFVKHG-HERASIEIELKGSPRIGNIIIKRQIKRSNNSSVWKINGQPATQKEILTEINALHIQVDNLCQFLPQ-----------DKVCEFAQMSPSELLKETQKAAGEEDLTDWH 208
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Match: F0ZCB0_DICPU (Structural maintenance of chromosomes protein 5 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZCB0_DICPU) HSP 1 Score: 154 bits (390), Expect = 8.540e-40 Identity = 82/179 (45.81%), Postives = 114/179 (63.69%), Query Frame = 1
Query: 91 GWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGRADNLSAFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNWHINGRSHSTKEVENKIRALGIQVDNLCTMLPQASDACMTPRRQDKVGDFSGFTPDKLLLETEKALSGTELYDPH 627
G+ KGSIV +K+ NF+ Y D + GPRLN+V+GPNGSGKS++VCAIALGLGGSP +LGR L FV G V +EL+ PDG N + R ++ NS ++ +NG++ + ++ +I+ L IQV+NLC LPQ DKV F+ +P +LLLETEKA+ +Y+ H
Sbjct: 64 GYVKGSIVRIKLNNFVTYSDVEFRPGPRLNVVIGPNGSGKSSIVCAIALGLGGSPNLLGRQKQLGDFVKRGTMS-GFVEIELFNPDGENFIIKRDLKKEGNSGDFKLNGKNITKADLLARIKELNIQVENLCQFLPQ-----------DKVVGFASMSPTELLLETEKAIGVDNMYENH 230 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10344.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10344.558.1 >prot_Ecto-sp8_S_contig10344.558.1 ID=prot_Ecto-sp8_S_contig10344.558.1|Name=mRNA_Ecto-sp8_S_contig10344.558.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=209bp MVTTNISSRAPMSRERLTGSGTGAASREVSGWKKGSIVSLKMKNFLVYKDback to top mRNA from alignment at Ecto-sp8_S_contig10344:897..4902+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10344.558.1 ID=mRNA_Ecto-sp8_S_contig10344.558.1|Name=mRNA_Ecto-sp8_S_contig10344.558.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4006bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10344:897..4902+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10344:897..4902+ >mRNA_Ecto-sp8_S_contig10344.558.1 ID=mRNA_Ecto-sp8_S_contig10344.558.1|Name=mRNA_Ecto-sp8_S_contig10344.558.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10344:897..4902+ (Ectocarpus species8 EcLAC_412)back to top |