prot_Ecto-sp8_S_contig10318.519.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10318.519.1
Unique Nameprot_Ecto-sp8_S_contig10318.519.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length393
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10318.519.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 548 bits (1413), Expect = 1.500e-185
Identity = 289/317 (91.17%), Postives = 294/317 (92.74%), Query Frame = 0 
Query:   77 MNVSAQAATAAAASDVSQQPRQAHRPQQSPQQGGHGTSGGIGGHDLSLPWLADRFYLNVIPTVRESERNGQGEDWRISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGNGGPGIKAAIFGTMSLQISRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRYSSAEVIDTTRGEAGGGGGEXXXXXSDYGTSSDRGEDYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVRTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFDHSKKGEAARARDLDDG 393
            MNVSAQAATAAAASDVSQQPRQAHRPQQSP+QGGHGTSGGIGGHDLSLPWLADRFYLNVIP VRESERNGQGEDW+ISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSG GGPGIKAAIFGTMSLQI RLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLR SSAEVI+TTRGEA      X    SDY T+SD G DYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKV TGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRF  S KGEAA  RDLD+G
Sbjct:    1 MNVSAQAATAAAASDVSQQPRQAHRPQQSPKQGGHGTSGGIGGHDLSLPWLADRFYLNVIPAVRESERNGQGEDWKISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGKGGPGIKAAIFGTMSLQIGRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRDSSAEVINTTRGEAAXXXXXXKGGASDYRTNSDHGADYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFGQSNKGEAACTRDLDNG 317
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BLAST of mRNA_Ecto-sp8_S_contig10318.519.1 vs. uniprot
Match: B8CAD5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAD5_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 3.380e-5
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 0 
Query:  337 GVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFDHSK 380
            GVHHPKF LLF K  SLVV + T NL   TA+DA+WVQRF+  +
Sbjct:  618 GVHHPKFFLLFEKRGSLVVIISTSNLTSPTALDASWVQRFEQKE 661
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10318.519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP39_ECTSI1.500e-18591.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8CAD5_THAPS3.380e-561.36Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 14..393
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 9..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10318contigEcto-sp8_S_contig10318:1129..5949 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10318.519.1mRNA_Ecto-sp8_S_contig10318.519.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10318 1129..5951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10318.519.1 ID=prot_Ecto-sp8_S_contig10318.519.1|Name=mRNA_Ecto-sp8_S_contig10318.519.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=393bp
RLAGLLLLERLRADRLRLHRLAMIDSIGCSSSSSSSSSSSSSSHGPRSLK
RPRPTEINPLRQTRRGDDRKGSREPAMNVSAQAATAAAASDVSQQPRQAH
RPQQSPQQGGHGTSGGIGGHDLSLPWLADRFYLNVIPTVRESERNGQGED
WRISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGNG
GPGIKAAIFGTMSLQISRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRY
SSAEVIDTTRGEAGGGGGEGEGGGSDYGTSSDRGEDYILFRESLGKNASS
EQRERLKAAGREDRLDYWEMSMPAHVQVEKVRTGGLGVHHPKFGLLFLKD
DSLVVYVGTGNLGVDTAIDATWVQRFDHSKKGEAARARDLDDG
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