mRNA_Ecto-sp8_S_contig10318.519.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10318.519.1
Unique NamemRNA_Ecto-sp8_S_contig10318.519.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10318.519.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 548 bits (1413), Expect = 1.500e-185
Identity = 289/317 (91.17%), Postives = 294/317 (92.74%), Query Frame = 1 
Query:  229 MNVSAQAATAAAASDVSQQPRQAHRPQQSPQQGGHGTSGGIGGHDLSLPWLADRFYLNVIPTVRESERNGQGEDWRISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGNGGPGIKAAIFGTMSLQISRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRYSSAEVIDTTRGEAGGGGGEXXXXXSDYGTSSDRGEDYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVRTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFDHSKKGEAARARDLDDG 1179
            MNVSAQAATAAAASDVSQQPRQAHRPQQSP+QGGHGTSGGIGGHDLSLPWLADRFYLNVIP VRESERNGQGEDW+ISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSG GGPGIKAAIFGTMSLQI RLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLR SSAEVI+TTRGEA      X    SDY T+SD G DYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKV TGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRF  S KGEAA  RDLD+G
Sbjct:    1 MNVSAQAATAAAASDVSQQPRQAHRPQQSPKQGGHGTSGGIGGHDLSLPWLADRFYLNVIPAVRESERNGQGEDWKISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGKGGPGIKAAIFGTMSLQIGRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRDSSAEVINTTRGEAAXXXXXXKGGASDYRTNSDHGADYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFGQSNKGEAACTRDLDNG 317
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BLAST of mRNA_Ecto-sp8_S_contig10318.519.1 vs. uniprot
Match: B8CAD5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAD5_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 3.380e-5
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query: 1009 GVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFDHSK 1140
            GVHHPKF LLF K  SLVV + T NL   TA+DA+WVQRF+  +
Sbjct:  618 GVHHPKFFLLFEKRGSLVVIISTSNLTSPTALDASWVQRFEQKE 661
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10318.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP39_ECTSI1.500e-18591.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8CAD5_THAPS3.380e-561.36Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10318contigEcto-sp8_S_contig10318:1129..5951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score554.7
Seed ortholog evalue3.5e-155
Seed eggNOG ortholog2880.D7FP39
Model size1183
Hectar predicted targeting categorymitochondrion
Exons5
EggNOG OGs2E1MX@1,2S8Y8@2759
Cds size1179
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.441102-CDS-Ecto-sp8_S_contig10318:1128..12141681143130.441102-CDS-Ecto-sp8_S_contig10318:1128..1214Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10318 1129..1214 +
1681143130.4516454-CDS-Ecto-sp8_S_contig10318:2093..26571681143130.4516454-CDS-Ecto-sp8_S_contig10318:2093..2657Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10318 2094..2657 +
1681143130.4608476-CDS-Ecto-sp8_S_contig10318:3264..36041681143130.4608476-CDS-Ecto-sp8_S_contig10318:3264..3604Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10318 3265..3604 +
1681143130.4715722-CDS-Ecto-sp8_S_contig10318:5285..54101681143130.4715722-CDS-Ecto-sp8_S_contig10318:5285..5410Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10318 5286..5410 +
1681143130.4811203-CDS-Ecto-sp8_S_contig10318:5885..59491681143130.4811203-CDS-Ecto-sp8_S_contig10318:5885..5949Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10318 5886..5949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10318.519.1prot_Ecto-sp8_S_contig10318.519.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10318 1129..5949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10318.519.1

>prot_Ecto-sp8_S_contig10318.519.1 ID=prot_Ecto-sp8_S_contig10318.519.1|Name=mRNA_Ecto-sp8_S_contig10318.519.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=393bp
RLAGLLLLERLRADRLRLHRLAMIDSIGCSSSSSSSSSSSSSSHGPRSLK
RPRPTEINPLRQTRRGDDRKGSREPAMNVSAQAATAAAASDVSQQPRQAH
RPQQSPQQGGHGTSGGIGGHDLSLPWLADRFYLNVIPTVRESERNGQGED
WRISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGNG
GPGIKAAIFGTMSLQISRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRY
SSAEVIDTTRGEAGGGGGEGEGGGSDYGTSSDRGEDYILFRESLGKNASS
EQRERLKAAGREDRLDYWEMSMPAHVQVEKVRTGGLGVHHPKFGLLFLKD
DSLVVYVGTGNLGVDTAIDATWVQRFDHSKKGEAARARDLDDG
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mRNA from alignment at Ecto-sp8_S_contig10318:1129..5951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10318.519.1 ID=mRNA_Ecto-sp8_S_contig10318.519.1|Name=mRNA_Ecto-sp8_S_contig10318.519.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4823bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10318:1129..5951+ (Ectocarpus species8 EcLAC_412)
CGTCTTGCTGGCTTGCTCCTTCTTGAGAGGTTGAGAGCTGACAGGTTGAG
ACTGCACAGGTTGGCGATGATCGATTCCATTGGATGGTGAGTGAGCGATG
GCTTCTATAGCACCCAGCGGCTGTTTGTTCACCTGGGGATTATCGCTGTT
GTGTACAGCGAAAAGGTAGTCTATTTGTGAGTTGTAGAGTTGTAGCCTAC
CATTTCAAATTTTCTGGTTGCCACAAGTCCTCTCTCGCATGAGACGCACG
CACGGTGGGCACCGCTGCTGCCTTTCTGCGCATGGACGGTAGGGCATCAC
ACAAGTATGGGCGCTTGCGCAGATTCAGTGGTTGCAGCTGGGTAGCGAGG
CTGAGATTGCCAGCATGTTGATGCGTTTGAAAAAAAAAAAAAAAAATTGA
CTAGACGTGTTTTCAAGTGGGATGATGCCCATGTGCAGCGGGTCTAGCTT
GCTGCTCTGGACTTCTTCTTACCTGATAGCCGAAAGTATTTGCGCGATCA
CGTTGCCATTGAAAAACCTCAGTCAGGGAACCTTGCTGTTCCCGAACTCG
AAATGTATGTGGAACACACCCCATTCATACGAGATGTGGTTGAAACACGC
TCATGCCGTACAAGTACATATGGGCGAGCGGTCAATTGCTCTATGGAACG
GCTCAACACAAAAAACACCAAAATACTTTAGGATGCAAGTACTCACGTAT
AATACTACTGTAGGGCAACGACTGATATTGGTCAAGGCCGTGATCCTCGT
TCGCACGTACATGGTACAGCTGCATGCACAGGTGCAGACCACCACATGCC
GTGGTGGTTGCGAACCCGTGAAAGCTTGCTCACCCCCATTCGTCCCGAAC
GCCGTGTGTGGGTCTCCTCGCTTTGTGTACGTGGTATTGCACGCAAACCC
TTTTCCCCTCGGTCTGTCTCCTCCTTTTGTATACGCGTGTGCGTTGTACG
TCTTGGAAACAGCAGCAGTAGCAGTAGCAGTAGCAGCAGCAGCAGCAGCA
GCAGCAGCCACGGGCCTCGATCGCTCAAGCGTCCCCGCCCCACCGAGATC
AACCCCCTTCGACAAACCCGCCGCGGCGATGACAGGAAGGGGTCCAGAGA
GCCCGCGATGAACGTCTCCGCACAAGCAGCAACGGCGGCGGCAGCATCAG
ACGTTTCCCAGCAACCGCGACAAGCTCACCGCCCGCAGCAAAGTCCTCAG
CAGGGCGGCCACGGGACCAGCGGCGGCATTGGCGGCCATGACCTCTCTCT
TCCCTGGCTTGCAGACCGGTTTTACCTTAACGTGATCCCCACCGTGCGAG
AGAGCGAACGGAATGGCCAAGGGGAGGACTGGAGAATTTCACAAGACACC
AACGTCAAGTCCGAGAGCAACAGGAGCGGCAGCAAACACGACGGGGGCGG
CGATAGCGTAGGACGAGGTTACGCGAACGGCCCCTTCTTCTCGCTCGAGA
GACTCGTCGACGTCGTGAGCGGCAACGGGGGACCCGGGATCAAGGCAGCC
ATTTTCGGAACAATGTCGCTCCAGATCAGGTACGTTTCGTCGCGATTCGG
CGGCAGGCGCAACGCACCGCACACAAGCACTGCCCTGGTGTGGCACCTGC
ACGATATCAACCTAGTACCGTTCTGGCGTACAGTGAAAGCGTCACGCTCT
GTGCATCCTCCTGACCCTCACGGAGACGTATTCTTCGCGTGGATTGTGAA
CAGCTATTTGCGTTTACTCTGTGCACCAAATCTTGTCTGGAGGGTATGCG
TAGGTGCTCGTTTGGGTTGGGGCCGAGTTTTCTCCCCTATCGGGGAACGC
TAAAAGCCCACGGTCTCGATACGCACGGAACTAGCGCTAGTCACGGTTAA
TTCCCGCTGCTGCTGGCGCTGCTAATTGGCGCTGAATTGCTGCTAAGCTC
GGGGTGCACTCCTGTTCTCAAAAATGCTTCCTGCTTCCCCCCCCCTCCCC
CTGCTGCACAACATATCACCTGCCGTCACCGGTCGCCGCCGGAACCAATG
CACGGCAATGAACGAAAAACGACCGCACGCACGGCCGCGCAATTTCAACA
CGTCCAACAAATTGTGCGCATGGCGTGGGGGCGATATAAACGCCATGACA
CGCACACACACACACACACGCAAACGATCGCAATAGCCGGTTGGCTGAGG
AGATTCCCAGCCTTTTTTCGAGATCGAACCTGACAGTCCCGGTGCTGGTC
TTGCACGGGGAGAAGTCCCTGAGACGGCTGCGGTACTCATCTGCTGAGGT
GATCGATACTACTAGGGGAGAAGCTGGCGGTGGCGGCGGCGAAGGCGAAG
GCGGAGGTAGCGACTATGGTACAAGTAGCGACCGCGGCGAGGATTACATT
CTCTTCCGGGAAAGCTTGGGGAAGAACGCATCTTCCGAACAGCGGGAACG
CTTGAAAGCGGCGGGGCGCGAAGATCGCCTGGACTATTGGGAAATGTCCA
TGCCCGCCCACGTACAAGTCGAAAAAGTAAGTCAGCGGGGTACGCCTACG
GGTGTAACGGGTGTCGTGCGAAACAACAAAAAGGGTTCCGTGTTTTGCAT
GTTCTGAGACAGACGTGTTTAGCCGCGGCGAGCGATAAGTCTTGGCATTT
TGACCCAAGATTTGCTCACAATATATCTCCGCCAAGATTAGCAGTATAAC
GACTTTTGGGGGAAATATGTTGAATGTTGAAAAGGCGGCGTGTTATTCCT
CTCTTCTGCTTGAAGTTGATAAAGACACAACGTCCACTTGGTCCACAGAA
AATGCCACGGTGTGGCGAAAAGTGAGCATGACGAAGTTGTAGAAGGGGCG
TCCCTCCCCCAGCTGTATTACCTCAATACTATGGGTGGATACTAGCGATG
GGTGCCTACCTGGGGTGCAAAATAGAAGCCGTTGCCCACGAGCTCATGTC
AAGCGGAGAAACAAAATTGTTCCATTGCTGTCCAACTGACAAGAAAGTGC
ATCAACCCGAAGCCGATGACACCCGTGCACGTACCTCACCATGTAGCAGG
CGTACCGAGGTCAAACCTCCGGCGCTGTCATCTGCACTCACGGATCTGGC
TCGGGTGCAAACGGATTGGGTGTGGAGTGATTCGATGAAAAGATAGAAGC
GTCGCACACGACAGAGCTGTGTTGGCAGAACTTTCCTCCTCCTCTATTTG
TCTGCTTAAAAATAAAGTACTCTTTGAACGGTCCCTCGACAGACTGGTGA
TGACGCACGTGGAACGAGCCAGGGCAAATACGCATTTTTTCGCGCGCCTT
GGTCGTTTTCGTTCGCTGTCGGCGCCCGTGGCGCCGACACAGTGACGACA
GGGTGCGTTAAAGACCCTTGCGAGTGTGCCACGTGCAGATTTCATGGCGT
TATGGACGATTAGGTTGACTGACCTTCGGTGATCGCGCCGCACCCAGGCA
AGATTTGTTACGCTGCCTCAAGATTTGTCGGAAGGCTCGTTTCGACAGAT
CTTGGATCAAGATTTGTTCGAAAGGGCAGATTTTGGGCTTCGAGAAATCT
TGGCCAAGATATATCGGAAGATTTCGCTCCCATTAATCGTGAAACTGGCA
GATCTTGGCCAAGATCAAGATTTATTGACAGGATTTCGTTCCCATAAATC
GGGGTCTGAGAGGCTGGCTAGGTTTTCCTGTGTCACGGACGCAAGTGGAA
CTCTTGAACATGCCCGTGTGTTCAAGACATCTACTTGTAAGAAGCTCATC
CGCGGCAACGTCACACGTTATCGCTCGCTGCCTACTGAGCTGCAGCTCTG
CCGCGTGGCCGCAAGGCAGCGGTGATCACACCTTTGCTTTGCGCCTGCGT
CGTGCTGCACGCGCCAGGTTGGGCTTGTTGGTCGTTCGTTGTAGTGTGTC
GAATCACACAAGCACACCTAGGGGTCGGCGGCTACGGCCGAGGTATGTTC
GTTTCAGAAGTCTACCACACCGCAGCTCATCCGTGAACGGCACGCATGTT
TCACGCTGCACTCACTATTCTCGATCGTCAGCATCTTGGCCATCGGTCAA
ACGTTCAACCGAAAAAAGAGCACGGCAGAGAGCAAATGAAGTTAGCGGAG
AGCCTGAAAGTTGTATCTAGCGCGTCCGGCTGCCCTCTGGCTGATTCCCC
CCCCCCACCCCCCTCCTTGGTGTTGATGTTGCTGTTGTGGTCTGGACGAA
TCTCAAGGTTCGCACGGGAGGGCTTGGAGTCCACCATCCAAAGTTTGGGC
TTCTTTTCCTCAAGGACGATTCCCTGGTGGTATACGTGGGCACGGGAAAC
TTGGGCGTGGACACCGCTATAGACGCCACCTGGTGAGGCGATGCTTTTGC
TGGTGACGCATGTGCACACAGAAGAGGCCCCTGTTTAAGGCCGCCATGTG
CCACGGCGAAACACACATCTTAAACAGGGCACCCGGCCTTATTCAGATTA
CGAGACCACTTGAATACTTCATCTGTGTCACAACGGCCTTAAATAGGACA
ACTGGCCTTTATTGTGTGCATACATACATGTGTTTTGCTAGCGGCTCGGG
GGATTTAGATTGCGTTGCAGTAGTCCGTCACCTGGTCTATAGGGCAGTCG
AGTTGCCTTTGGGGCGAGTGGTCGAGGTGGCACGTCGAGGCTTTGCTGTT
CGCGTTGGGTGTGTTCTTTGTTGCACGCACGGGGGATTGACCAGGAAGTA
AAGAAACAACGACTCGCGTGTGTCGACACGAGAACAGCAACAACGCCAGC
GAACAACACCGGAAAACAAAAATCGAAAACCGCGATAATCGAAAACCGCG
ATCGCAGGGTGCAAAGGTTCGACCACAGCAAGAAGGGAGAGGCAGCCCGT
GCAAGAGACCTCGACGACGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10318:1129..5951+

>mRNA_Ecto-sp8_S_contig10318.519.1 ID=mRNA_Ecto-sp8_S_contig10318.519.1|Name=mRNA_Ecto-sp8_S_contig10318.519.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10318:1129..5951+ (Ectocarpus species8 EcLAC_412)
CGTCTTGCTGGCTTGCTCCTTCTTGAGAGGTTGAGAGCTGACAGGTTGAG
ACTGCACAGGTTGGCGATGATCGATTCCATTGGATGCAGTAGCAGTAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCCACGGGCCTCGATCGCTCAAG
CGTCCCCGCCCCACCGAGATCAACCCCCTTCGACAAACCCGCCGCGGCGA
TGACAGGAAGGGGTCCAGAGAGCCCGCGATGAACGTCTCCGCACAAGCAG
CAACGGCGGCGGCAGCATCAGACGTTTCCCAGCAACCGCGACAAGCTCAC
CGCCCGCAGCAAAGTCCTCAGCAGGGCGGCCACGGGACCAGCGGCGGCAT
TGGCGGCCATGACCTCTCTCTTCCCTGGCTTGCAGACCGGTTTTACCTTA
ACGTGATCCCCACCGTGCGAGAGAGCGAACGGAATGGCCAAGGGGAGGAC
TGGAGAATTTCACAAGACACCAACGTCAAGTCCGAGAGCAACAGGAGCGG
CAGCAAACACGACGGGGGCGGCGATAGCGTAGGACGAGGTTACGCGAACG
GCCCCTTCTTCTCGCTCGAGAGACTCGTCGACGTCGTGAGCGGCAACGGG
GGACCCGGGATCAAGGCAGCCATTTTCGGAACAATGTCGCTCCAGATCAG
CCGGTTGGCTGAGGAGATTCCCAGCCTTTTTTCGAGATCGAACCTGACAG
TCCCGGTGCTGGTCTTGCACGGGGAGAAGTCCCTGAGACGGCTGCGGTAC
TCATCTGCTGAGGTGATCGATACTACTAGGGGAGAAGCTGGCGGTGGCGG
CGGCGAAGGCGAAGGCGGAGGTAGCGACTATGGTACAAGTAGCGACCGCG
GCGAGGATTACATTCTCTTCCGGGAAAGCTTGGGGAAGAACGCATCTTCC
GAACAGCGGGAACGCTTGAAAGCGGCGGGGCGCGAAGATCGCCTGGACTA
TTGGGAAATGTCCATGCCCGCCCACGTACAAGTCGAAAAAGTTCGCACGG
GAGGGCTTGGAGTCCACCATCCAAAGTTTGGGCTTCTTTTCCTCAAGGAC
GATTCCCTGGTGGTATACGTGGGCACGGGAAACTTGGGCGTGGACACCGC
TATAGACGCCACCTGGGTGCAAAGGTTCGACCACAGCAAGAAGGGAGAGG
CAGCCCGTGCAAGAGACCTCGACGACGGG
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