prot_Ecto-sp8_S_contig102913.482.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp8_S_contig102913.482.1
Unique Name	prot_Ecto-sp8_S_contig102913.482.1
Type	polypeptide
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length	144

Homology

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A0U2M924_ACAPC (40S ribosomal protein S23 n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2M924_ACAPC)

HSP 1 Score: 276 bits (705), Expect = 1.070e-93
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKPSGI+TARKHVKNRRS  WADKDYKKAHLGTRWKANPF GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLV+G GRKGH+VGDIPGVRFKI KVANVSLNALFRGKKERPRS
Sbjct:    1 MGKPSGIRTARKHVKNRRSNRWADKDYKKAHLGTRWKANPFAGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVAGLGRKGHSVGDIPGVRFKIVKVANVSLNALFRGKKERPRS 143

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A1D1V925_RAMVA (40S ribosomal protein S23 n=4 Tax=Panarthropoda TaxID=88770 RepID=A0A1D1V925_RAMVA)

HSP 1 Score: 268 bits (684), Expect = 1.700e-90
Identity = 129/143 (90.21%), Postives = 136/143 (95.10%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP GI+TARKH  NRR QVWADKDYKKAHLGTRWKANPF GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVPNDGCLNF+EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL ALF+GKKERPR+
Sbjct:    1 MGKPHGIRTARKHRTNRRLQVWADKDYKKAHLGTRWKANPFAGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALFKGKKERPRA 143

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A6P6YAW6_DERPT (40S ribosomal protein S23 n=11 Tax=Protostomia TaxID=33317 RepID=A0A6P6YAW6_DERPT)

HSP 1 Score: 265 bits (678), Expect = 1.400e-89
Identity = 128/143 (89.51%), Postives = 134/143 (93.71%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP G+KTARKHV NRR Q W DKDYKKAHLGTRWKANPF GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLNF+EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++GKKERPRS
Sbjct:    1 MGKPKGLKTARKHVNNRREQRWHDKDYKKAHLGTRWKANPFAGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A267DG40_9PLAT (40S ribosomal protein S23 (Fragment) n=11 Tax=Protostomia TaxID=33317 RepID=A0A267DG40_9PLAT)

HSP 1 Score: 264 bits (674), Expect = 5.880e-89
Identity = 129/143 (90.21%), Postives = 135/143 (94.41%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP+GI+TARK   NRR Q WADKDYKK+HLGTRWKANPFGGASHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGR GHAVGDIPGVRFKI KVANVSL ALFRGKKERPRS
Sbjct:    2 MGKPAGIRTARKLRNNRREQRWADKDYKKSHLGTRWKANPFGGASHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRAGHAVGDIPGVRFKIVKVANVSLWALFRGKKERPRS 144

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: C4WY99_ACYPI (40S ribosomal protein S23 n=23 Tax=Arthropoda TaxID=6656 RepID=C4WY99_ACYPI)

HSP 1 Score: 263 bits (671), Expect = 1.630e-88
Identity = 127/143 (88.81%), Postives = 135/143 (94.41%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP GI+TARKHV +RR Q WADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN++EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGIRTARKHVNHRRVQKWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A1B6H402_9HEMI (40S ribosomal protein S23 n=11 Tax=Arthropoda TaxID=6656 RepID=A0A1B6H402_9HEMI)

HSP 1 Score: 262 bits (670), Expect = 2.320e-88
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP G++TARKHV +RR Q WADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN++EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGLRTARKHVNHRREQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A1B6C8R5_9HEMI (40S ribosomal protein S23 (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6C8R5_9HEMI)

HSP 1 Score: 262 bits (670), Expect = 4.890e-88
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP G++TARKHV +RR Q WADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN++EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:   23 MGKPRGLRTARKHVNHRREQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 165

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: RS23_PAPDA (40S ribosomal protein S23 n=52 Tax=cellular organisms TaxID=131567 RepID=RS23_PAPDA)

HSP 1 Score: 260 bits (665), Expect = 1.340e-87
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP GI+TARKHV +RR Q WADKDYKKAH+GTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A067RG36_ZOONE (40S ribosomal protein S23 n=9 Tax=Eukaryota TaxID=2759 RepID=A0A067RG36_ZOONE)

HSP 1 Score: 260 bits (665), Expect = 1.340e-87
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP G++TARKHV +RR Q WAD DYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN++EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGLRTARKHVNHRREQRWADNDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143

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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A6A4X8A2_AMPAM (40S ribosomal protein S23 n=7 Tax=Pancrustacea TaxID=197562 RepID=A0A6A4X8A2_AMPAM)

HSP 1 Score: 260 bits (665), Expect = 1.340e-87
Identity = 127/143 (88.81%), Postives = 134/143 (93.71%), Query Frame = 0

Query:    1 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 143
            MGKP G++TARKHVKNRR   WAD DYKKA+LGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+VEENDEVLV+GFGRKGHAVGDIPGVRFKI KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGLRTARKHVKNRRENRWADNDYKKANLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYVEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANVSLLALYKEKKERPRS 143

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0U2M924_ACAPC	1.070e-93	94.41	40S ribosomal protein S23 n=1 Tax=Acartia pacifica...	[more]
A0A1D1V925_RAMVA	1.700e-90	90.21	40S ribosomal protein S23 n=4 Tax=Panarthropoda Ta...	[more]
A0A6P6YAW6_DERPT	1.400e-89	89.51	40S ribosomal protein S23 n=11 Tax=Protostomia Tax...	[more]
A0A267DG40_9PLAT	5.880e-89	90.21	40S ribosomal protein S23 (Fragment) n=11 Tax=Prot...	[more]
C4WY99_ACYPI	1.630e-88	88.81	40S ribosomal protein S23 n=23 Tax=Arthropoda TaxI...	[more]
A0A1B6H402_9HEMI	2.320e-88	88.11	40S ribosomal protein S23 n=11 Tax=Arthropoda TaxI...	[more]
A0A1B6C8R5_9HEMI	4.890e-88	88.11	40S ribosomal protein S23 (Fragment) n=1 Tax=Clast...	[more]
RS23_PAPDA	1.340e-87	87.41	40S ribosomal protein S23 n=52 Tax=cellular organi...	[more]
A0A067RG36_ZOONE	1.340e-87	87.41	40S ribosomal protein S23 n=9 Tax=Eukaryota TaxID=...	[more]
A0A6A4X8A2_AMPAM	1.340e-87	88.81	40S ribosomal protein S23 n=7 Tax=Pancrustacea Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PIRSF	PIRSF002133	RPS12p_RPS12a_RPS23e_RPS12o	coord: 16..143 e-value: 4.7E-34 score: 114.5
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 30..142 e-value: 8.9E-52 score: 173.5
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 1..143
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 60..67
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	TIGRFAM	TIGR00982	TIGR00982	coord: 7..142 e-value: 1.2E-54 score: 181.7
None	No IPR available	GENE3D	2.40.50.140		coord: 25..143 e-value: 4.1E-67 score: 225.1
None	No IPR available	PANTHER	PTHR11652:SF14	40S RIBOSOMAL PROTEIN S23	coord: 1..143
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 20..141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig102913	contig	Ecto-sp8_S_contig102913:53..484 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig102913.482.1	mRNA_Ecto-sp8_S_contig102913.482.1	Ectocarpus species8 EcLAC_412	mRNA	Ecto-sp8_S_contig102913 53..487 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp8_S_contig102913.482.1 ID=prot_Ecto-sp8_S_contig102913.482.1|Name=mRNA_Ecto-sp8_S_contig102913.482.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGI
VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEV
LVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006032	Ribosomal_S12/S23
IPR005680	Ribosomal_S23_euk/arc
IPR012340	NA-bd_OB-fold