mRNA_Ecto-sp8_S_contig102913.482.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102913.482.1
Unique NamemRNA_Ecto-sp8_S_contig102913.482.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A0U2M924_ACAPC (40S ribosomal protein S23 n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2M924_ACAPC)

HSP 1 Score: 276 bits (705), Expect = 1.110e-93
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKPSGI+TARKHVKNRRS  WADKDYKKAHLGTRWKANPF GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLV+G GRKGH+VGDIPGVRFKI KVANVSLNALFRGKKERPRS
Sbjct:    1 MGKPSGIRTARKHVKNRRSNRWADKDYKKAHLGTRWKANPFAGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVAGLGRKGHSVGDIPGVRFKIVKVANVSLNALFRGKKERPRS 143
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BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A1D1V925_RAMVA (40S ribosomal protein S23 n=4 Tax=Panarthropoda TaxID=88770 RepID=A0A1D1V925_RAMVA)

HSP 1 Score: 268 bits (684), Expect = 1.770e-90
Identity = 129/143 (90.21%), Postives = 136/143 (95.10%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKP GI+TARKH  NRR QVWADKDYKKAHLGTRWKANPF GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVPNDGCLNF+EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL ALF+GKKERPR+
Sbjct:    1 MGKPHGIRTARKHRTNRRLQVWADKDYKKAHLGTRWKANPFAGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALFKGKKERPRA 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A6P6YAW6_DERPT (40S ribosomal protein S23 n=11 Tax=Protostomia TaxID=33317 RepID=A0A6P6YAW6_DERPT)

HSP 1 Score: 265 bits (678), Expect = 1.450e-89
Identity = 128/143 (89.51%), Postives = 134/143 (93.71%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKP G+KTARKHV NRR Q W DKDYKKAHLGTRWKANPF GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLNF+EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++GKKERPRS
Sbjct:    1 MGKPKGLKTARKHVNNRREQRWHDKDYKKAHLGTRWKANPFAGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A267DG40_9PLAT (40S ribosomal protein S23 (Fragment) n=11 Tax=Protostomia TaxID=33317 RepID=A0A267DG40_9PLAT)

HSP 1 Score: 264 bits (675), Expect = 4.310e-89
Identity = 129/144 (89.58%), Postives = 136/144 (94.44%), Query Frame = 1 
Query:    1 TMGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            +MGKP+GI+TARK   NRR Q WADKDYKK+HLGTRWKANPFGGASHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGR GHAVGDIPGVRFKI KVANVSL ALFRGKKERPRS
Sbjct:    1 SMGKPAGIRTARKLRNNRREQRWADKDYKKSHLGTRWKANPFGGASHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRAGHAVGDIPGVRFKIVKVANVSLWALFRGKKERPRS 144
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: C4WY99_ACYPI (40S ribosomal protein S23 n=23 Tax=Arthropoda TaxID=6656 RepID=C4WY99_ACYPI)

HSP 1 Score: 263 bits (671), Expect = 1.700e-88
Identity = 127/143 (88.81%), Postives = 135/143 (94.41%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKP GI+TARKHV +RR Q WADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN++EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGIRTARKHVNHRRVQKWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A1B6H402_9HEMI (40S ribosomal protein S23 n=11 Tax=Arthropoda TaxID=6656 RepID=A0A1B6H402_9HEMI)

HSP 1 Score: 262 bits (670), Expect = 2.410e-88
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKP G++TARKHV +RR Q WADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN++EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGLRTARKHVNHRREQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A1B6C8R5_9HEMI (40S ribosomal protein S23 (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6C8R5_9HEMI)

HSP 1 Score: 262 bits (670), Expect = 5.090e-88
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKP G++TARKHV +RR Q WADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN++EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:   23 MGKPRGLRTARKHVNHRREQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 165
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: RS23_PAPDA (40S ribosomal protein S23 n=52 Tax=cellular organisms TaxID=131567 RepID=RS23_PAPDA)

HSP 1 Score: 260 bits (665), Expect = 1.400e-87
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKP GI+TARKHV +RR Q WADKDYKKAH+GTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A067RG36_ZOONE (40S ribosomal protein S23 n=9 Tax=Eukaryota TaxID=2759 RepID=A0A067RG36_ZOONE)

HSP 1 Score: 260 bits (665), Expect = 1.400e-87
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKP G++TARKHV +RR Q WAD DYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN++EENDEVLV+GFGRKGHAVGDIPGVRFK+ KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGLRTARKHVNHRREQRWADNDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Match: A0A6A4X8A2_AMPAM (40S ribosomal protein S23 n=7 Tax=Pancrustacea TaxID=197562 RepID=A0A6A4X8A2_AMPAM)

HSP 1 Score: 260 bits (665), Expect = 1.400e-87
Identity = 127/143 (88.81%), Postives = 134/143 (93.71%), Query Frame = 1 
Query:    4 MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS 432
            MGKP G++TARKHVKNRR   WAD DYKKA+LGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+VEENDEVLV+GFGRKGHAVGDIPGVRFKI KVANVSL AL++ KKERPRS
Sbjct:    1 MGKPRGLRTARKHVKNRRENRWADNDYKKANLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYVEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANVSLLALYKEKKERPRS 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102913.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2M924_ACAPC1.110e-9394.4140S ribosomal protein S23 n=1 Tax=Acartia pacifica... [more]
A0A1D1V925_RAMVA1.770e-9090.2140S ribosomal protein S23 n=4 Tax=Panarthropoda Ta... [more]
A0A6P6YAW6_DERPT1.450e-8989.5140S ribosomal protein S23 n=11 Tax=Protostomia Tax... [more]
A0A267DG40_9PLAT4.310e-8989.5840S ribosomal protein S23 (Fragment) n=11 Tax=Prot... [more]
C4WY99_ACYPI1.700e-8888.8140S ribosomal protein S23 n=23 Tax=Arthropoda TaxI... [more]
A0A1B6H402_9HEMI2.410e-8888.1140S ribosomal protein S23 n=11 Tax=Arthropoda TaxI... [more]
A0A1B6C8R5_9HEMI5.090e-8888.1140S ribosomal protein S23 (Fragment) n=1 Tax=Clast... [more]
RS23_PAPDA1.400e-8787.4140S ribosomal protein S23 n=52 Tax=cellular organi... [more]
A0A067RG36_ZOONE1.400e-8787.4140S ribosomal protein S23 n=9 Tax=Eukaryota TaxID=... [more]
A0A6A4X8A2_AMPAM1.400e-8788.8140S ribosomal protein S23 n=7 Tax=Pancrustacea Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102913contigEcto-sp8_S_contig102913:53..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score264.6
Seed ortholog evalue2.7e-68
Seed eggNOG ortholog13249.RPRC003768-PA
Preferred nameRpS23
Model size435
KEGG koko:K02973
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Ribosomal protein S12/S23
EggNOG OGs39ZWD@33154,3BPBM@33208,3CU4X@33213,3E895@33342,3SI0T@50557,41WQW@6656,COG0048@1,KOG1749@2759
Cds size432
COG Functional cat.J
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143128.047022-CDS-Ecto-sp8_S_contig102913:52..4841681143128.047022-CDS-Ecto-sp8_S_contig102913:52..484Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102913 53..484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143128.0562108-UTR-Ecto-sp8_S_contig102913:484..4871681143128.0562108-UTR-Ecto-sp8_S_contig102913:484..487Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig102913 485..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102913.482.1prot_Ecto-sp8_S_contig102913.482.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102913 53..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102913.482.1

>prot_Ecto-sp8_S_contig102913.482.1 ID=prot_Ecto-sp8_S_contig102913.482.1|Name=mRNA_Ecto-sp8_S_contig102913.482.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
MGKPSGIKTARKHVKNRRSQVWADKDYKKAHLGTRWKANPFGGASHAKGI
VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEV
LVSGFGRKGHAVGDIPGVRFKICKVANVSLNALFRGKKERPRS*
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mRNA from alignment at Ecto-sp8_S_contig102913:53..487-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102913.482.1 ID=mRNA_Ecto-sp8_S_contig102913.482.1|Name=mRNA_Ecto-sp8_S_contig102913.482.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102913:53..487- (Ectocarpus species8 EcLAC_412)
ACCATGGGTAAACCATCCGGTATCAAGACTGCCCGTAAGCACGTGAAGAA
CAGGCGTAGCCAGGTCTGGGCTGACAAGGACTACAAGAAGGCTCATTTGG
GAACCAGATGGAAGGCCAATCCTTTCGGAGGAGCTTCTCACGCTAAGGGA
ATTGTTCTCGAGAAGGTTGGTGTCGAGGCCAAGCAGCCTAACTCTGCTAT
CAGGAAGTGCGTGAGAGTCCAGCTGATCAAGAACGGAAAGAAGATCACTG
CTTTCGTCCCTAATGACGGTTGTCTCAACTTTGTTGAGGAGAACGACGAG
GTTTTGGTATCAGGATTCGGTCGTAAGGGTCACGCTGTTGGTGACATTCC
CGGTGTCAGATTCAAGATCTGCAAGGTCGCCAACGTTTCCCTGAACGCCC
TCTTCAGGGGCAAGAAGGAGAGGCCACGCTCTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102913:53..487-

>mRNA_Ecto-sp8_S_contig102913.482.1 ID=mRNA_Ecto-sp8_S_contig102913.482.1|Name=mRNA_Ecto-sp8_S_contig102913.482.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102913:53..487- (Ectocarpus species8 EcLAC_412)
ATGGGTAAACCATCCGGTATCAAGACTGCCCGTAAGCACGTGAAGAACAG
GCGTAGCCAGGTCTGGGCTGACAAGGACTACAAGAAGGCTCATTTGGGAA
CCAGATGGAAGGCCAATCCTTTCGGAGGAGCTTCTCACGCTAAGGGAATT
GTTCTCGAGAAGGTTGGTGTCGAGGCCAAGCAGCCTAACTCTGCTATCAG
GAAGTGCGTGAGAGTCCAGCTGATCAAGAACGGAAAGAAGATCACTGCTT
TCGTCCCTAATGACGGTTGTCTCAACTTTGTTGAGGAGAACGACGAGGTT
TTGGTATCAGGATTCGGTCGTAAGGGTCACGCTGTTGGTGACATTCCCGG
TGTCAGATTCAAGATCTGCAAGGTCGCCAACGTTTCCCTGAACGCCCTCT
TCAGGGGCAAGAAGGAGAGGCCACGCTCTTAG
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