prot_Ecto-sp8_S_contig102822.468.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig102822.468.1
Unique Nameprot_Ecto-sp8_S_contig102822.468.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length165
Homology
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1M6PP95_9GAMM (DNA-binding transcriptional regulator, LysR family n=2 Tax=Halomonas TaxID=2745 RepID=A0A1M6PP95_9GAMM)

HSP 1 Score: 232 bits (591), Expect = 8.770e-74
Identity = 123/164 (75.00%), Postives = 141/164 (85.98%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 164
            MQSR+++LELL+AVVDSGGFSAAAR+ DIPVA+VSRA+QRLE RL TPLL RTTRSV LTSEG+ FV  +R+GL ++  AE+ +  SR RP+G LRVDAATPF+LHQLVPLI  F +CYPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct:    1 MQSRTEDLELLVAVVDSGGFSAAARRLDIPVARVSRAVQRLERRLDTPLLNRTTRSVTLTSEGRVFVEQVREGLGRLAEAEEAMRLSRKRPSGPLRVDAATPFMLHQLVPLIGGFRDCYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A4U1LWF0_COBMA (LysR family transcriptional regulator n=4 Tax=Cobetia TaxID=204286 RepID=A0A4U1LWF0_COBMA)

HSP 1 Score: 231 bits (588), Expect = 2.420e-73
Identity = 123/165 (74.55%), Postives = 139/165 (84.24%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 165
            M+SRS +LE LLAVVDSGGFSAAA+QRD+PVAKVSRAIQRLE+ L TPLLTRTTRSV LT EG+ FV  IR+GLQQ+  AED L   R +P+GRLRVDAA+PFVLHQLVPL+  F   YPGI+LELSA D+IINLLEQRTDVAIRIG L DS LHA++LGRS LH
Sbjct:    1 MRSRSQDLEWLLAVVDSGGFSAAAKQRDVPVAKVSRAIQRLESELETPLLTRTTRSVALTDEGRAFVERIREGLQQLSEAEDVLRQQRDQPSGRLRVDAASPFVLHQLVPLVGEFERRYPGISLELSAGDDIINLLEQRTDVAIRIGELEDSTLHAKVLGRSTLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: G4F2W4_9GAMM (LysR family transcriptional regulator n=2 Tax=Halomonas TaxID=2745 RepID=G4F2W4_9GAMM)

HSP 1 Score: 230 bits (587), Expect = 3.540e-73
Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 164
            M SR+ +L+LL+AVVDSGGFSAAARQ D+PVAKVSRA+QRLE +LGTPLL RTTRSV LTSEG+ FV  +R GL  +E AE+ +  S+ RP+GRLRVDAATPFVLHQLVPLI  F E YPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct:    1 MLSRTVDLQLLVAVVDSGGFSAAARQMDVPVAKVSRAVQRLEQQLGTPLLNRTTRSVTLTSEGRTFVERVRLGLSTLEEAEEAMRLSQARPSGRLRVDAATPFVLHQLVPLIGAFREHYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: UPI0013D70A51 (LysR family transcriptional regulator n=1 Tax=Modicisalibacter TaxID=574347 RepID=UPI0013D70A51)

HSP 1 Score: 229 bits (585), Expect = 7.110e-73
Identity = 120/164 (73.17%), Postives = 140/164 (85.37%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 164
            MQSRSD LELLLAV+DSGGFSAAAR  D+PVAK+SRA+QRLE +L TPLL RTTRSVVLT+EG++FV  +R+GL Q+ +AE+ L     +P+G LRVDAATPF+LHQLVPL+  FT+ YPGI LELSASD+IINLLEQRTDVAIRIG L DS LHAR+LGRSPL
Sbjct:    1 MQSRSDNLELLLAVIDSGGFSAAARHLDVPVAKISRAVQRLERQLETPLLNRTTRSVVLTAEGRRFVEQVREGLGQLAAAEEALRLRHSQPSGPLRVDAATPFILHQLVPLVGSFTDRYPGIRLELSASDDIINLLEQRTDVAIRIGPLTDSTLHARVLGRSPL 164          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A7W5G441_9GAMM (DNA-binding transcriptional LysR family regulator n=1 Tax=Halomonas organivorans TaxID=257772 RepID=A0A7W5G441_9GAMM)

HSP 1 Score: 228 bits (582), Expect = 2.020e-72
Identity = 119/164 (72.56%), Postives = 141/164 (85.98%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 164
            M+SR+++LELL+AV+DSGGFSAAARQ D+PVA+VSRA+QRLE +L TPLL RTTRSV LTSEG+ FV  +R+GL ++  AE+ +  SR RP+G LRVDAATPF+LHQLVPL++ F  CYPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct:    1 MKSRTEDLELLVAVIDSGGFSAAARQLDVPVARVSRAVQRLERQLDTPLLNRTTRSVTLTSEGRVFVEQVREGLGRLAEAEEAMRLSRERPSGPLRVDAATPFMLHQLVPLVSGFRACYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: UPI001C9658F1 (LysR substrate-binding domain-containing protein n=3 Tax=Halomonadaceae TaxID=28256 RepID=UPI001C9658F1)

HSP 1 Score: 228 bits (581), Expect = 2.620e-72
Identity = 117/165 (70.91%), Postives = 141/165 (85.45%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 165
            M++RS++LELLLAVVDSGGFSAA+ + D+PVA++SRA+QRLE RL  PLL RTTRSV LT EG +FVA++R+GL+++ +AE++L   RG PAGRLRVD+A+PFVLHQLVPL+  F   YPGI LELSASD+IINLLEQR DVAIRIG LADS LHARLLGRS LH
Sbjct:    1 MKTRSEDLELLLAVVDSGGFSAASTRLDVPVARISRAVQRLEQRLDVPLLNRTTRSVALTDEGSRFVAEVREGLERLNAAEESLALRRGEPAGRLRVDSASPFVLHQLVPLVGEFRRRYPGIELELSASDDIINLLEQRADVAIRIGALADSTLHARLLGRSRLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A558HPX6_9GAMM (LysR family transcriptional regulator n=1 Tax=Cobetia crustatorum TaxID=553385 RepID=A0A558HPX6_9GAMM)

HSP 1 Score: 228 bits (580), Expect = 3.940e-72
Identity = 120/165 (72.73%), Postives = 137/165 (83.03%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 165
            M+SRS++LELLLAVVDSGGFSAAA + D+PVAKVSRAIQRLE +L TPLL RTTRSV LT EG+ FV  +R+GLQ +  AE+ L   R +P GRLRVDAA+PFVLHQLVPL+  F  CYPGI+LELSA+D+IINLLEQ TDVAIRIG L DS LHAR LGRSPLH
Sbjct:    1 MRSRSEDLELLLAVVDSGGFSAAANRLDVPVAKVSRAIQRLERQLETPLLNRTTRSVALTDEGRGFVERVREGLQLLGGAEEVLIQQRDQPVGRLRVDAASPFVLHQLVPLVGEFGRCYPGISLELSAADDIINLLEQHTDVAIRIGELEDSTLHARALGRSPLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1G7QJJ7_9GAMM (DNA-binding transcriptional regulator, LysR family n=3 Tax=Halomonas TaxID=2745 RepID=A0A1G7QJJ7_9GAMM)

HSP 1 Score: 227 bits (578), Expect = 8.160e-72
Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 165
            MQSR+++L LL+AVVDSGGFSAAAR  D+PVAKVSRA+QRLE +L TPLL RTTRSV LT+EG+ FV  +R+GL  +  AE+    SR RP+G+LRVDAATPFVLHQLVPLI  F E YPGI LELSASD+IINLLEQRTDVAIRIG L DS LH+R+LGRSPLH
Sbjct:    1 MQSRTEDLRLLVAVVDSGGFSAAARLEDVPVAKVSRAVQRLEQQLDTPLLNRTTRSVTLTTEGRAFVERVREGLAVLAQAEEQTRLSRERPSGQLRVDAATPFVLHQLVPLIGAFREQYPGIELELSASDDIINLLEQRTDVAIRIGSLEDSTLHSRMLGRSPLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A0P7DE82_9GAMM (LysR family transcriptional regulator n=9 Tax=Bacteria TaxID=2 RepID=A0A0P7DE82_9GAMM)

HSP 1 Score: 223 bits (569), Expect = 1.830e-70
Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 165
            M+SRSD+LELLLAVVDSGGFSAAA + +IPVAKVSRAIQRLE  L TPLL RTTRSV LT EG+ FV  +R+GL  + SAE+ L   R +P+GRLRVDAA+PFVLHQLVPL+  F+  YPGIALELSA+D+IINLLEQRTDVAIRIG L DS LHA++LGRS LH
Sbjct:    1 MRSRSDDLELLLAVVDSGGFSAAANRLNIPVAKVSRAIQRLEGELETPLLNRTTRSVALTDEGRGFVERVREGLLLLGSAEEALLQQRAQPSGRLRVDAASPFVLHQLVPLVAEFSRSYPGIALELSAADDIINLLEQRTDVAIRIGELDDSTLHAKVLGRSTLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1I7CHT4_9GAMM (DNA-binding transcriptional regulator, LysR family n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1I7CHT4_9GAMM)

HSP 1 Score: 220 bits (561), Expect = 3.060e-69
Identity = 119/164 (72.56%), Postives = 135/164 (82.32%), Query Frame = 0
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 164
            MQSR+++L+LL+AVVDSGGFSAAAR   +PVA+VSRA+QRLE +L TPLL RTTRSV LTSEG+ F+  +R GL  +E AE+ +  SR RP GRLRVDAATPFVLHQLVPLI  F   YPGI LELSASD+IINLLEQRTDVAIRIG L DS LHAR LGRSPL
Sbjct:    1 MQSRTEDLQLLVAVVDSGGFSAAARLMGVPVARVSRAVQRLEQQLDTPLLNRTTRSVTLTSEGRIFIDRVRAGLNTLEEAEEAMRLSRERPGGRLRVDAATPFVLHQLVPLIGAFRAHYPGIELELSASDDIINLLEQRTDVAIRIGSLEDSTLHARPLGRSPL 164          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M6PP95_9GAMM8.770e-7475.00DNA-binding transcriptional regulator, LysR family... [more]
A0A4U1LWF0_COBMA2.420e-7374.55LysR family transcriptional regulator n=4 Tax=Cobe... [more]
G4F2W4_9GAMM3.540e-7375.61LysR family transcriptional regulator n=2 Tax=Halo... [more]
UPI0013D70A517.110e-7373.17LysR family transcriptional regulator n=1 Tax=Modi... [more]
A0A7W5G441_9GAMM2.020e-7272.56DNA-binding transcriptional LysR family regulator ... [more]
UPI001C9658F12.620e-7270.91LysR substrate-binding domain-containing protein n... [more]
A0A558HPX6_9GAMM3.940e-7272.73LysR family transcriptional regulator n=1 Tax=Cobe... [more]
A0A1G7QJJ7_9GAMM8.160e-7272.73DNA-binding transcriptional regulator, LysR family... [more]
A0A0P7DE82_9GAMM1.830e-7072.73LysR family transcriptional regulator n=9 Tax=Bact... [more]
A0A1I7CHT4_9GAMM3.060e-6972.56DNA-binding transcriptional regulator, LysR family... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000847Transcription regulator HTH, LysRPFAMPF00126HTH_1coord: 7..64
e-value: 5.8E-18
score: 64.6
IPR000847Transcription regulator HTH, LysRPROSITEPS50931HTH_LYSRcoord: 1..60
score: 22.162
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 4..88
e-value: 3.4E-24
score: 86.2
IPR005119LysR, substrate-bindingPFAMPF03466LysR_substratecoord: 89..164
e-value: 1.1E-13
score: 51.0
NoneNo IPR availableGENE3D3.40.190.10coord: 89..165
e-value: 8.4E-20
score: 72.8
NoneNo IPR availablePANTHERPTHR30537:SF20coord: 1..165
NoneNo IPR availablePANTHERPTHR30537HTH-TYPE TRANSCRIPTIONAL REGULATORcoord: 1..165
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 89..164
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 6..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102822contigEcto-sp8_S_contig102822:3..497 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102822.468.1mRNA_Ecto-sp8_S_contig102822.468.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig102822 3..497 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig102822.468.1 ID=prot_Ecto-sp8_S_contig102822.468.1|Name=mRNA_Ecto-sp8_S_contig102822.468.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=165bp
MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLL
TRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAA
TPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLA
DSILHARLLGRSPLH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000847Tscrpt_reg_HTH_LysR
IPR036388WH-like_DNA-bd_sf
IPR005119LysR_subst-bd
IPR036390WH_DNA-bd_sf