mRNA_Ecto-sp8_S_contig102822.468.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102822.468.1
Unique NamemRNA_Ecto-sp8_S_contig102822.468.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1M6PP95_9GAMM (DNA-binding transcriptional regulator, LysR family n=2 Tax=Halomonas TaxID=2745 RepID=A0A1M6PP95_9GAMM)

HSP 1 Score: 232 bits (591), Expect = 8.770e-74
Identity = 123/164 (75.00%), Postives = 141/164 (85.98%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
            MQSR+++LELL+AVVDSGGFSAAAR+ DIPVA+VSRA+QRLE RL TPLL RTTRSV LTSEG+ FV  +R+GL ++  AE+ +  SR RP+G LRVDAATPF+LHQLVPLI  F +CYPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct:    1 MQSRTEDLELLVAVVDSGGFSAAARRLDIPVARVSRAVQRLERRLDTPLLNRTTRSVTLTSEGRVFVEQVREGLGRLAEAEEAMRLSRKRPSGPLRVDAATPFMLHQLVPLIGGFRDCYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A4U1LWF0_COBMA (LysR family transcriptional regulator n=4 Tax=Cobetia TaxID=204286 RepID=A0A4U1LWF0_COBMA)

HSP 1 Score: 231 bits (588), Expect = 2.420e-73
Identity = 123/165 (74.55%), Postives = 139/165 (84.24%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
            M+SRS +LE LLAVVDSGGFSAAA+QRD+PVAKVSRAIQRLE+ L TPLLTRTTRSV LT EG+ FV  IR+GLQQ+  AED L   R +P+GRLRVDAA+PFVLHQLVPL+  F   YPGI+LELSA D+IINLLEQRTDVAIRIG L DS LHA++LGRS LH
Sbjct:    1 MRSRSQDLEWLLAVVDSGGFSAAAKQRDVPVAKVSRAIQRLESELETPLLTRTTRSVALTDEGRAFVERIREGLQQLSEAEDVLRQQRDQPSGRLRVDAASPFVLHQLVPLVGEFERRYPGISLELSAGDDIINLLEQRTDVAIRIGELEDSTLHAKVLGRSTLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: G4F2W4_9GAMM (LysR family transcriptional regulator n=2 Tax=Halomonas TaxID=2745 RepID=G4F2W4_9GAMM)

HSP 1 Score: 230 bits (587), Expect = 3.540e-73
Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
            M SR+ +L+LL+AVVDSGGFSAAARQ D+PVAKVSRA+QRLE +LGTPLL RTTRSV LTSEG+ FV  +R GL  +E AE+ +  S+ RP+GRLRVDAATPFVLHQLVPLI  F E YPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct:    1 MLSRTVDLQLLVAVVDSGGFSAAARQMDVPVAKVSRAVQRLEQQLGTPLLNRTTRSVTLTSEGRTFVERVRLGLSTLEEAEEAMRLSQARPSGRLRVDAATPFVLHQLVPLIGAFREHYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: UPI0013D70A51 (LysR family transcriptional regulator n=1 Tax=Modicisalibacter TaxID=574347 RepID=UPI0013D70A51)

HSP 1 Score: 229 bits (585), Expect = 7.110e-73
Identity = 120/164 (73.17%), Postives = 140/164 (85.37%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
            MQSRSD LELLLAV+DSGGFSAAAR  D+PVAK+SRA+QRLE +L TPLL RTTRSVVLT+EG++FV  +R+GL Q+ +AE+ L     +P+G LRVDAATPF+LHQLVPL+  FT+ YPGI LELSASD+IINLLEQRTDVAIRIG L DS LHAR+LGRSPL
Sbjct:    1 MQSRSDNLELLLAVIDSGGFSAAARHLDVPVAKISRAVQRLERQLETPLLNRTTRSVVLTAEGRRFVEQVREGLGQLAAAEEALRLRHSQPSGPLRVDAATPFILHQLVPLVGSFTDRYPGIRLELSASDDIINLLEQRTDVAIRIGPLTDSTLHARVLGRSPL 164          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A7W5G441_9GAMM (DNA-binding transcriptional LysR family regulator n=1 Tax=Halomonas organivorans TaxID=257772 RepID=A0A7W5G441_9GAMM)

HSP 1 Score: 228 bits (582), Expect = 2.020e-72
Identity = 119/164 (72.56%), Postives = 141/164 (85.98%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
            M+SR+++LELL+AV+DSGGFSAAARQ D+PVA+VSRA+QRLE +L TPLL RTTRSV LTSEG+ FV  +R+GL ++  AE+ +  SR RP+G LRVDAATPF+LHQLVPL++ F  CYPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct:    1 MKSRTEDLELLVAVIDSGGFSAAARQLDVPVARVSRAVQRLERQLDTPLLNRTTRSVTLTSEGRVFVEQVREGLGRLAEAEEAMRLSRERPSGPLRVDAATPFMLHQLVPLVSGFRACYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: UPI001C9658F1 (LysR substrate-binding domain-containing protein n=3 Tax=Halomonadaceae TaxID=28256 RepID=UPI001C9658F1)

HSP 1 Score: 228 bits (581), Expect = 2.620e-72
Identity = 117/165 (70.91%), Postives = 141/165 (85.45%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
            M++RS++LELLLAVVDSGGFSAA+ + D+PVA++SRA+QRLE RL  PLL RTTRSV LT EG +FVA++R+GL+++ +AE++L   RG PAGRLRVD+A+PFVLHQLVPL+  F   YPGI LELSASD+IINLLEQR DVAIRIG LADS LHARLLGRS LH
Sbjct:    1 MKTRSEDLELLLAVVDSGGFSAASTRLDVPVARISRAVQRLEQRLDVPLLNRTTRSVALTDEGSRFVAEVREGLERLNAAEESLALRRGEPAGRLRVDSASPFVLHQLVPLVGEFRRRYPGIELELSASDDIINLLEQRADVAIRIGALADSTLHARLLGRSRLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A558HPX6_9GAMM (LysR family transcriptional regulator n=1 Tax=Cobetia crustatorum TaxID=553385 RepID=A0A558HPX6_9GAMM)

HSP 1 Score: 228 bits (580), Expect = 3.940e-72
Identity = 120/165 (72.73%), Postives = 137/165 (83.03%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
            M+SRS++LELLLAVVDSGGFSAAA + D+PVAKVSRAIQRLE +L TPLL RTTRSV LT EG+ FV  +R+GLQ +  AE+ L   R +P GRLRVDAA+PFVLHQLVPL+  F  CYPGI+LELSA+D+IINLLEQ TDVAIRIG L DS LHAR LGRSPLH
Sbjct:    1 MRSRSEDLELLLAVVDSGGFSAAANRLDVPVAKVSRAIQRLERQLETPLLNRTTRSVALTDEGRGFVERVREGLQLLGGAEEVLIQQRDQPVGRLRVDAASPFVLHQLVPLVGEFGRCYPGISLELSAADDIINLLEQHTDVAIRIGELEDSTLHARALGRSPLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1G7QJJ7_9GAMM (DNA-binding transcriptional regulator, LysR family n=3 Tax=Halomonas TaxID=2745 RepID=A0A1G7QJJ7_9GAMM)

HSP 1 Score: 227 bits (578), Expect = 8.160e-72
Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
            MQSR+++L LL+AVVDSGGFSAAAR  D+PVAKVSRA+QRLE +L TPLL RTTRSV LT+EG+ FV  +R+GL  +  AE+    SR RP+G+LRVDAATPFVLHQLVPLI  F E YPGI LELSASD+IINLLEQRTDVAIRIG L DS LH+R+LGRSPLH
Sbjct:    1 MQSRTEDLRLLVAVVDSGGFSAAARLEDVPVAKVSRAVQRLEQQLDTPLLNRTTRSVTLTTEGRAFVERVREGLAVLAQAEEQTRLSRERPSGQLRVDAATPFVLHQLVPLIGAFREQYPGIELELSASDDIINLLEQRTDVAIRIGSLEDSTLHSRMLGRSPLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A0P7DE82_9GAMM (LysR family transcriptional regulator n=9 Tax=Bacteria TaxID=2 RepID=A0A0P7DE82_9GAMM)

HSP 1 Score: 223 bits (569), Expect = 1.830e-70
Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
            M+SRSD+LELLLAVVDSGGFSAAA + +IPVAKVSRAIQRLE  L TPLL RTTRSV LT EG+ FV  +R+GL  + SAE+ L   R +P+GRLRVDAA+PFVLHQLVPL+  F+  YPGIALELSA+D+IINLLEQRTDVAIRIG L DS LHA++LGRS LH
Sbjct:    1 MRSRSDDLELLLAVVDSGGFSAAANRLNIPVAKVSRAIQRLEGELETPLLNRTTRSVALTDEGRGFVERVREGLLLLGSAEEALLQQRAQPSGRLRVDAASPFVLHQLVPLVAEFSRSYPGIALELSAADDIINLLEQRTDVAIRIGELDDSTLHAKVLGRSTLH 165          
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1I7CHT4_9GAMM (DNA-binding transcriptional regulator, LysR family n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1I7CHT4_9GAMM)

HSP 1 Score: 220 bits (561), Expect = 3.060e-69
Identity = 119/164 (72.56%), Postives = 135/164 (82.32%), Query Frame = 1
Query:    1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
            MQSR+++L+LL+AVVDSGGFSAAAR   +PVA+VSRA+QRLE +L TPLL RTTRSV LTSEG+ F+  +R GL  +E AE+ +  SR RP GRLRVDAATPFVLHQLVPLI  F   YPGI LELSASD+IINLLEQRTDVAIRIG L DS LHAR LGRSPL
Sbjct:    1 MQSRTEDLQLLVAVVDSGGFSAAARLMGVPVARVSRAVQRLEQQLDTPLLNRTTRSVTLTSEGRIFIDRVRAGLNTLEEAEEAMRLSRERPGGRLRVDAATPFVLHQLVPLIGAFRAHYPGIELELSASDDIINLLEQRTDVAIRIGSLEDSTLHARPLGRSPL 164          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M6PP95_9GAMM8.770e-7475.00DNA-binding transcriptional regulator, LysR family... [more]
A0A4U1LWF0_COBMA2.420e-7374.55LysR family transcriptional regulator n=4 Tax=Cobe... [more]
G4F2W4_9GAMM3.540e-7375.61LysR family transcriptional regulator n=2 Tax=Halo... [more]
UPI0013D70A517.110e-7373.17LysR family transcriptional regulator n=1 Tax=Modi... [more]
A0A7W5G441_9GAMM2.020e-7272.56DNA-binding transcriptional LysR family regulator ... [more]
UPI001C9658F12.620e-7270.91LysR substrate-binding domain-containing protein n... [more]
A0A558HPX6_9GAMM3.940e-7272.73LysR family transcriptional regulator n=1 Tax=Cobe... [more]
A0A1G7QJJ7_9GAMM8.160e-7272.73DNA-binding transcriptional regulator, LysR family... [more]
A0A0P7DE82_9GAMM1.830e-7072.73LysR family transcriptional regulator n=9 Tax=Bact... [more]
A0A1I7CHT4_9GAMM3.060e-6972.56DNA-binding transcriptional regulator, LysR family... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102822contigEcto-sp8_S_contig102822:3..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score234.2
Seed ortholog evalue4.4e-59
Seed eggNOG ortholog28258.KP05_14780
Preferred nameyafC
Model size495
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.LysR family transcriptional regulator
EggNOG OGs1MU7H@1224,1RPF8@1236,1XHPI@135619,COG0583@1,COG0583@2
Cds size495
COG Functional cat.K
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.1098711-CDS-Ecto-sp8_S_contig102822:2..4971681143127.1098711-CDS-Ecto-sp8_S_contig102822:2..497Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102822 3..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102822.468.1prot_Ecto-sp8_S_contig102822.468.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102822 3..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102822.468.1

>prot_Ecto-sp8_S_contig102822.468.1 ID=prot_Ecto-sp8_S_contig102822.468.1|Name=mRNA_Ecto-sp8_S_contig102822.468.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=165bp
MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLL
TRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAA
TPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLA
DSILHARLLGRSPLH
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mRNA from alignment at Ecto-sp8_S_contig102822:3..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102822.468.1 ID=mRNA_Ecto-sp8_S_contig102822.468.1|Name=mRNA_Ecto-sp8_S_contig102822.468.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=495bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102822:3..497- (Ectocarpus species8 EcLAC_412)
ATGCAAAGTCGTTCCGATGAGCTTGAACTGCTCCTCGCCGTAGTGGATAG CGGTGGTTTCAGTGCCGCTGCTCGCCAGCGGGATATTCCGGTGGCTAAAG TATCTCGTGCTATTCAGCGCCTAGAAGCACGTCTCGGAACGCCGCTGCTA ACACGAACGACACGCAGCGTGGTACTCACCAGTGAAGGCCAACAGTTTGT AGCAGACATACGACAAGGACTGCAGCAGATTGAATCGGCAGAGGACAATT TATTTAGCAGTCGCGGGCGACCGGCAGGAAGGCTACGCGTTGATGCTGCT ACACCCTTTGTTTTGCATCAGTTAGTACCACTGATCAACCCGTTTACAGA GTGCTACCCAGGCATTGCACTTGAGCTCTCCGCCTCAGATAACATTATCA ACTTGCTTGAGCAACGTACGGATGTTGCCATTCGAATTGGTGGTTTAGCA GATTCCATTCTACATGCACGCTTGCTGGGGCGCTCACCACTACAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102822:3..497-

>mRNA_Ecto-sp8_S_contig102822.468.1 ID=mRNA_Ecto-sp8_S_contig102822.468.1|Name=mRNA_Ecto-sp8_S_contig102822.468.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102822:3..497- (Ectocarpus species8 EcLAC_412)
ATGCAAAGTCGTTCCGATGAGCTTGAACTGCTCCTCGCCGTAGTGGATAG
CGGTGGTTTCAGTGCCGCTGCTCGCCAGCGGGATATTCCGGTGGCTAAAG
TATCTCGTGCTATTCAGCGCCTAGAAGCACGTCTCGGAACGCCGCTGCTA
ACACGAACGACACGCAGCGTGGTACTCACCAGTGAAGGCCAACAGTTTGT
AGCAGACATACGACAAGGACTGCAGCAGATTGAATCGGCAGAGGACAATT
TATTTAGCAGTCGCGGGCGACCGGCAGGAAGGCTACGCGTTGATGCTGCT
ACACCCTTTGTTTTGCATCAGTTAGTACCACTGATCAACCCGTTTACAGA
GTGCTACCCAGGCATTGCACTTGAGCTCTCCGCCTCAGATAACATTATCA
ACTTGCTTGAGCAACGTACGGATGTTGCCATTCGAATTGGTGGTTTAGCA
GATTCCATTCTACATGCACGCTTGCTGGGGCGCTCACCACTACAC
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