mRNA_Ecto-sp8_S_contig102822.468.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1M6PP95_9GAMM (DNA-binding transcriptional regulator, LysR family n=2 Tax=Halomonas TaxID=2745 RepID=A0A1M6PP95_9GAMM) HSP 1 Score: 232 bits (591), Expect = 8.770e-74 Identity = 123/164 (75.00%), Postives = 141/164 (85.98%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
MQSR+++LELL+AVVDSGGFSAAAR+ DIPVA+VSRA+QRLE RL TPLL RTTRSV LTSEG+ FV +R+GL ++ AE+ + SR RP+G LRVDAATPF+LHQLVPLI F +CYPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct: 1 MQSRTEDLELLVAVVDSGGFSAAARRLDIPVARVSRAVQRLERRLDTPLLNRTTRSVTLTSEGRVFVEQVREGLGRLAEAEEAMRLSRKRPSGPLRVDAATPFMLHQLVPLIGGFRDCYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A4U1LWF0_COBMA (LysR family transcriptional regulator n=4 Tax=Cobetia TaxID=204286 RepID=A0A4U1LWF0_COBMA) HSP 1 Score: 231 bits (588), Expect = 2.420e-73 Identity = 123/165 (74.55%), Postives = 139/165 (84.24%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
M+SRS +LE LLAVVDSGGFSAAA+QRD+PVAKVSRAIQRLE+ L TPLLTRTTRSV LT EG+ FV IR+GLQQ+ AED L R +P+GRLRVDAA+PFVLHQLVPL+ F YPGI+LELSA D+IINLLEQRTDVAIRIG L DS LHA++LGRS LH
Sbjct: 1 MRSRSQDLEWLLAVVDSGGFSAAAKQRDVPVAKVSRAIQRLESELETPLLTRTTRSVALTDEGRAFVERIREGLQQLSEAEDVLRQQRDQPSGRLRVDAASPFVLHQLVPLVGEFERRYPGISLELSAGDDIINLLEQRTDVAIRIGELEDSTLHAKVLGRSTLH 165
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: G4F2W4_9GAMM (LysR family transcriptional regulator n=2 Tax=Halomonas TaxID=2745 RepID=G4F2W4_9GAMM) HSP 1 Score: 230 bits (587), Expect = 3.540e-73 Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
M SR+ +L+LL+AVVDSGGFSAAARQ D+PVAKVSRA+QRLE +LGTPLL RTTRSV LTSEG+ FV +R GL +E AE+ + S+ RP+GRLRVDAATPFVLHQLVPLI F E YPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct: 1 MLSRTVDLQLLVAVVDSGGFSAAARQMDVPVAKVSRAVQRLEQQLGTPLLNRTTRSVTLTSEGRTFVERVRLGLSTLEEAEEAMRLSQARPSGRLRVDAATPFVLHQLVPLIGAFREHYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: UPI0013D70A51 (LysR family transcriptional regulator n=1 Tax=Modicisalibacter TaxID=574347 RepID=UPI0013D70A51) HSP 1 Score: 229 bits (585), Expect = 7.110e-73 Identity = 120/164 (73.17%), Postives = 140/164 (85.37%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
MQSRSD LELLLAV+DSGGFSAAAR D+PVAK+SRA+QRLE +L TPLL RTTRSVVLT+EG++FV +R+GL Q+ +AE+ L +P+G LRVDAATPF+LHQLVPL+ FT+ YPGI LELSASD+IINLLEQRTDVAIRIG L DS LHAR+LGRSPL
Sbjct: 1 MQSRSDNLELLLAVIDSGGFSAAARHLDVPVAKISRAVQRLERQLETPLLNRTTRSVVLTAEGRRFVEQVREGLGQLAAAEEALRLRHSQPSGPLRVDAATPFILHQLVPLVGSFTDRYPGIRLELSASDDIINLLEQRTDVAIRIGPLTDSTLHARVLGRSPL 164
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A7W5G441_9GAMM (DNA-binding transcriptional LysR family regulator n=1 Tax=Halomonas organivorans TaxID=257772 RepID=A0A7W5G441_9GAMM) HSP 1 Score: 228 bits (582), Expect = 2.020e-72 Identity = 119/164 (72.56%), Postives = 141/164 (85.98%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
M+SR+++LELL+AV+DSGGFSAAARQ D+PVA+VSRA+QRLE +L TPLL RTTRSV LTSEG+ FV +R+GL ++ AE+ + SR RP+G LRVDAATPF+LHQLVPL++ F CYPGI LELSASD+IINLLEQRTDVAIRIGGL DS LHAR LGRSPL
Sbjct: 1 MKSRTEDLELLVAVIDSGGFSAAARQLDVPVARVSRAVQRLERQLDTPLLNRTTRSVTLTSEGRVFVEQVREGLGRLAEAEEAMRLSRERPSGPLRVDAATPFMLHQLVPLVSGFRACYPGIELELSASDDIINLLEQRTDVAIRIGGLEDSTLHARPLGRSPL 164
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: UPI001C9658F1 (LysR substrate-binding domain-containing protein n=3 Tax=Halomonadaceae TaxID=28256 RepID=UPI001C9658F1) HSP 1 Score: 228 bits (581), Expect = 2.620e-72 Identity = 117/165 (70.91%), Postives = 141/165 (85.45%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
M++RS++LELLLAVVDSGGFSAA+ + D+PVA++SRA+QRLE RL PLL RTTRSV LT EG +FVA++R+GL+++ +AE++L RG PAGRLRVD+A+PFVLHQLVPL+ F YPGI LELSASD+IINLLEQR DVAIRIG LADS LHARLLGRS LH
Sbjct: 1 MKTRSEDLELLLAVVDSGGFSAASTRLDVPVARISRAVQRLEQRLDVPLLNRTTRSVALTDEGSRFVAEVREGLERLNAAEESLALRRGEPAGRLRVDSASPFVLHQLVPLVGEFRRRYPGIELELSASDDIINLLEQRADVAIRIGALADSTLHARLLGRSRLH 165
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A558HPX6_9GAMM (LysR family transcriptional regulator n=1 Tax=Cobetia crustatorum TaxID=553385 RepID=A0A558HPX6_9GAMM) HSP 1 Score: 228 bits (580), Expect = 3.940e-72 Identity = 120/165 (72.73%), Postives = 137/165 (83.03%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
M+SRS++LELLLAVVDSGGFSAAA + D+PVAKVSRAIQRLE +L TPLL RTTRSV LT EG+ FV +R+GLQ + AE+ L R +P GRLRVDAA+PFVLHQLVPL+ F CYPGI+LELSA+D+IINLLEQ TDVAIRIG L DS LHAR LGRSPLH
Sbjct: 1 MRSRSEDLELLLAVVDSGGFSAAANRLDVPVAKVSRAIQRLERQLETPLLNRTTRSVALTDEGRGFVERVREGLQLLGGAEEVLIQQRDQPVGRLRVDAASPFVLHQLVPLVGEFGRCYPGISLELSAADDIINLLEQHTDVAIRIGELEDSTLHARALGRSPLH 165
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1G7QJJ7_9GAMM (DNA-binding transcriptional regulator, LysR family n=3 Tax=Halomonas TaxID=2745 RepID=A0A1G7QJJ7_9GAMM) HSP 1 Score: 227 bits (578), Expect = 8.160e-72 Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
MQSR+++L LL+AVVDSGGFSAAAR D+PVAKVSRA+QRLE +L TPLL RTTRSV LT+EG+ FV +R+GL + AE+ SR RP+G+LRVDAATPFVLHQLVPLI F E YPGI LELSASD+IINLLEQRTDVAIRIG L DS LH+R+LGRSPLH
Sbjct: 1 MQSRTEDLRLLVAVVDSGGFSAAARLEDVPVAKVSRAVQRLEQQLDTPLLNRTTRSVTLTTEGRAFVERVREGLAVLAQAEEQTRLSRERPSGQLRVDAATPFVLHQLVPLIGAFREQYPGIELELSASDDIINLLEQRTDVAIRIGSLEDSTLHSRMLGRSPLH 165
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A0P7DE82_9GAMM (LysR family transcriptional regulator n=9 Tax=Bacteria TaxID=2 RepID=A0A0P7DE82_9GAMM) HSP 1 Score: 223 bits (569), Expect = 1.830e-70 Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPLH 495
M+SRSD+LELLLAVVDSGGFSAAA + +IPVAKVSRAIQRLE L TPLL RTTRSV LT EG+ FV +R+GL + SAE+ L R +P+GRLRVDAA+PFVLHQLVPL+ F+ YPGIALELSA+D+IINLLEQRTDVAIRIG L DS LHA++LGRS LH
Sbjct: 1 MRSRSDDLELLLAVVDSGGFSAAANRLNIPVAKVSRAIQRLEGELETPLLNRTTRSVALTDEGRGFVERVREGLLLLGSAEEALLQQRAQPSGRLRVDAASPFVLHQLVPLVAEFSRSYPGIALELSAADDIINLLEQRTDVAIRIGELDDSTLHAKVLGRSTLH 165
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Match: A0A1I7CHT4_9GAMM (DNA-binding transcriptional regulator, LysR family n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1I7CHT4_9GAMM) HSP 1 Score: 220 bits (561), Expect = 3.060e-69 Identity = 119/164 (72.56%), Postives = 135/164 (82.32%), Query Frame = 1
Query: 1 MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLTRTTRSVVLTSEGQQFVADIRQGLQQIESAEDNLFSSRGRPAGRLRVDAATPFVLHQLVPLINPFTECYPGIALELSASDNIINLLEQRTDVAIRIGGLADSILHARLLGRSPL 492
MQSR+++L+LL+AVVDSGGFSAAAR +PVA+VSRA+QRLE +L TPLL RTTRSV LTSEG+ F+ +R GL +E AE+ + SR RP GRLRVDAATPFVLHQLVPLI F YPGI LELSASD+IINLLEQRTDVAIRIG L DS LHAR LGRSPL
Sbjct: 1 MQSRTEDLQLLVAVVDSGGFSAAARLMGVPVARVSRAVQRLEQQLDTPLLNRTTRSVTLTSEGRIFIDRVRAGLNTLEEAEEAMRLSRERPGGRLRVDAATPFVLHQLVPLIGAFRAHYPGIELELSASDDIINLLEQRTDVAIRIGSLEDSTLHARPLGRSPL 164 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102822.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig102822.468.1 >prot_Ecto-sp8_S_contig102822.468.1 ID=prot_Ecto-sp8_S_contig102822.468.1|Name=mRNA_Ecto-sp8_S_contig102822.468.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=165bp MQSRSDELELLLAVVDSGGFSAAARQRDIPVAKVSRAIQRLEARLGTPLLback to top mRNA from alignment at Ecto-sp8_S_contig102822:3..497- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig102822.468.1 ID=mRNA_Ecto-sp8_S_contig102822.468.1|Name=mRNA_Ecto-sp8_S_contig102822.468.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=495bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102822:3..497- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102822:3..497- >mRNA_Ecto-sp8_S_contig102822.468.1 ID=mRNA_Ecto-sp8_S_contig102822.468.1|Name=mRNA_Ecto-sp8_S_contig102822.468.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102822:3..497- (Ectocarpus species8 EcLAC_412)back to top |