prot_Ecto-sp8_S_contig102030.334.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig102030.334.1
Unique Nameprot_Ecto-sp8_S_contig102030.334.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length172
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102030.334.1 vs. uniprot
Match: A0A6H5JGF1_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 6.370e-32
Identity = 121/179 (67.60%), Postives = 123/179 (68.72%), Query Frame = 0 
Query:    1 QDKARYARELAEYKAWLLLKQDSTENKGEVPTQADKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAAELSVPATIXXXXXXXXXXXXXXPPMTEANVATS-------ERGTATTPVAPGAALPXXXXXXXXXXSLSTSFPEHPSHDGGMGVAMMHQQAKRQRREEGAAGGDCS 172
            +DKARYARELAEYKAWLLLKQ STENKGEVPTQADKAA                 XXXXXXXXXXXXXX            XXXXXXXXXXXXXX       VATS       ERG ATTPVAPGAALP    XXXXX SL TSFPEHP HDGG G+AMMHQQAKRQRREE AA GD S
Sbjct:   48 EDKARYARELAEYKAWLLLKQGSTENKGEVPTQADKAAVITAAAPTSRHASVALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-VATSVLPSSECERGKATTPVAPGAALPALPPXXXXXASLPTSFPEHPLHDGGTGMAMMHQQAKRQRREESAAAGDGS 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102030.334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGF1_9PHAE6.370e-3267.60HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102030contigEcto-sp8_S_contig102030:2..517 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102030.334.1mRNA_Ecto-sp8_S_contig102030.334.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig102030 2..517 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig102030.334.1 ID=prot_Ecto-sp8_S_contig102030.334.1|Name=mRNA_Ecto-sp8_S_contig102030.334.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=172bp
QDKARYARELAEYKAWLLLKQDSTENKGEVPTQADKAAATTAAAPTSRHA
SVAPPAPAAAAAAAATTTTTPAAELSVPATITTAATPVAPAPIPAPPMTE
ANVATSERGTATTPVAPGAALPALPPPPLPPASLSTSFPEHPSHDGGMGV
AMMHQQAKRQRREEGAAGGDCS
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