mRNA_Ecto-sp8_S_contig102030.334.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102030.334.1
Unique NamemRNA_Ecto-sp8_S_contig102030.334.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102030.334.1 vs. uniprot
Match: A0A6H5JGF1_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 6.370e-32
Identity = 121/179 (67.60%), Postives = 123/179 (68.72%), Query Frame = 1 
Query:    1 QDKARYARELAEYKAWLLLKQDSTENKGEVPTQADKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAAELSVPATIXXXXXXXXXXXXXXPPMTEANVATS-------ERGTATTPVAPGAALPXXXXXXXXXXSLSTSFPEHPSHDGGMGVAMMHQQAKRQRREEGAAGGDCS 516
            +DKARYARELAEYKAWLLLKQ STENKGEVPTQADKAA                 XXXXXXXXXXXXXX            XXXXXXXXXXXXXX       VATS       ERG ATTPVAPGAALP    XXXXX SL TSFPEHP HDGG G+AMMHQQAKRQRREE AA GD S
Sbjct:   48 EDKARYARELAEYKAWLLLKQGSTENKGEVPTQADKAAVITAAAPTSRHASVALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-VATSVLPSSECERGKATTPVAPGAALPALPPXXXXXASLPTSFPEHPLHDGGTGMAMMHQQAKRQRREESAAAGDGS 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102030.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGF1_9PHAE6.370e-3267.60HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102030contigEcto-sp8_S_contig102030:2..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size516
Hectar predicted targeting categoryother localisation
Exons1
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.5944226-CDS-Ecto-sp8_S_contig102030:1..5171681143118.5944226-CDS-Ecto-sp8_S_contig102030:1..517Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102030 2..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102030.334.1prot_Ecto-sp8_S_contig102030.334.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102030 2..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102030.334.1

>prot_Ecto-sp8_S_contig102030.334.1 ID=prot_Ecto-sp8_S_contig102030.334.1|Name=mRNA_Ecto-sp8_S_contig102030.334.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=172bp
QDKARYARELAEYKAWLLLKQDSTENKGEVPTQADKAAATTAAAPTSRHA
SVAPPAPAAAAAAAATTTTTPAAELSVPATITTAATPVAPAPIPAPPMTE
ANVATSERGTATTPVAPGAALPALPPPPLPPASLSTSFPEHPSHDGGMGV
AMMHQQAKRQRREEGAAGGDCS
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mRNA from alignment at Ecto-sp8_S_contig102030:2..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102030.334.1 ID=mRNA_Ecto-sp8_S_contig102030.334.1|Name=mRNA_Ecto-sp8_S_contig102030.334.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102030:2..517- (Ectocarpus species8 EcLAC_412)
CAGGACAAAGCACGATACGCGCGCGAGCTTGCCGAGTACAAGGCATGGCT
GCTCCTCAAGCAAGACTCGACAGAAAACAAGGGGGAGGTGCCGACGCAGG
CTGACAAGGCAGCAGCAACAACGGCAGCAGCGCCGACATCAAGGCACGCC
TCTGTTGCCCCGCCTGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAAC
AACAACAACACCGGCAGCTGAGTTGTCAGTGCCTGCCACAATCACGACTG
CGGCAACACCCGTCGCTCCAGCCCCTATACCGGCGCCGCCAATGACTGAA
GCCAATGTCGCGACTAGCGAGCGTGGCACGGCTACCACCCCGGTCGCGCC
TGGCGCCGCCCTTCCGGCCCTCCCGCCTCCACCCCTCCCGCCGGCGTCGC
TCTCCACTTCGTTTCCCGAGCACCCGTCGCATGACGGCGGCATGGGGGTG
GCGATGATGCACCAGCAGGCTAAGCGACAGAGGCGAGAGGAGGGTGCTGC
TGGTGGTGACTGTAGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102030:2..517-

>mRNA_Ecto-sp8_S_contig102030.334.1 ID=mRNA_Ecto-sp8_S_contig102030.334.1|Name=mRNA_Ecto-sp8_S_contig102030.334.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102030:2..517- (Ectocarpus species8 EcLAC_412)
CAGGACAAAGCACGATACGCGCGCGAGCTTGCCGAGTACAAGGCATGGCT
GCTCCTCAAGCAAGACTCGACAGAAAACAAGGGGGAGGTGCCGACGCAGG
CTGACAAGGCAGCAGCAACAACGGCAGCAGCGCCGACATCAAGGCACGCC
TCTGTTGCCCCGCCTGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAAC
AACAACAACACCGGCAGCTGAGTTGTCAGTGCCTGCCACAATCACGACTG
CGGCAACACCCGTCGCTCCAGCCCCTATACCGGCGCCGCCAATGACTGAA
GCCAATGTCGCGACTAGCGAGCGTGGCACGGCTACCACCCCGGTCGCGCC
TGGCGCCGCCCTTCCGGCCCTCCCGCCTCCACCCCTCCCGCCGGCGTCGC
TCTCCACTTCGTTTCCCGAGCACCCGTCGCATGACGGCGGCATGGGGGTG
GCGATGATGCACCAGCAGGCTAAGCGACAGAGGCGAGAGGAGGGTGCTGC
TGGTGGTGACTGTAGC
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