prot_Ecto-sp8_S_contig10196.318.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10196.318.1
Unique Nameprot_Ecto-sp8_S_contig10196.318.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length373
Homology
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: D8LMJ6_ECTSI (Suf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ6_ECTSI)

HSP 1 Score: 593 bits (1529), Expect = 2.530e-205
Identity = 355/372 (95.43%), Postives = 356/372 (95.70%), Query Frame = 0
Query:    1 MYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILNSRRGGNRGRDGGDGNNRDRNNPXXXXXXXXXXXXXXXSGGGPAKGGSEXXXXXXXXXXXXXXXXXXXXXXXXXXGSENDDEGWSRGDSSVSPLIPPFMRKLFMALPRHIGPQPDAEGLLKALRERALPGKPSAGSGGHKGKRRXXXXXXXXXGAGGLEAAPHKKPVRDIFRQRMQANLTPHDD 372
            MYLRFVRRNMGKEAARRAFGATR LRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQ VERRMNQVYQDNSGPSGLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILNSRRGGNRGRDGGDG NRDR+NP    XXXXXXXXXXX GGGPAKGGSE XXXXXXXXXXXXXXXXXXXXXXXXX      EGWSRGDSSVSPLIPPFMRKLFMALPRHIGPQPDAEGLLKALRERALPGKPSAGSGGHKGKR XXXXXXXXXGAGGLEAAPHKKPVRDIFRQRMQANLTPHDD
Sbjct:  429 MYLRFVRRNMGKEAARRAFGATRALRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQDVERRMNQVYQDNSGPSGLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILNSRRGGNRGRDGGDGTNRDRSNPQGGNXXXXXXXXXXXXGGGPAKGGSEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGWSRGDSSVSPLIPPFMRKLFMALPRHIGPQPDAEGLLKALRERALPGKPSAGSGGHKGKRXXXXXXXXXXGAGGLEAAPHKKPVRDIFRQRMQANLTPHDD 800          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A4D9CTB6_9STRA (Suf domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTB6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.140e-30
Identity = 139/360 (38.61%), Postives = 187/360 (51.94%), Query Frame = 0
Query:    2 YLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHP-----SAMP------------------AERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLALWKRCSVAGCGMHPEGEVD--------SAFSDRMFFERREILNSRRGGNRGRDGGDGNNRDRNNPXXXXXXXXXXXXXXXSGGGPAKGGSEXXXXXXXXXXXXXXXXXXXXXXXXXXGSE---NDDEGWSRG-DSSVSPLIPPFMRKLFMALPRHIGPQPDAEGLLKALRERALPGKPSAGSGG 326
            Y  +VRR  GKEAAR+ F AT+ LRR G++ Y  YLAHA +E HVN EP+VARRVL+HGLS H  ++ EPEYV+  ++ L++  DE+N+R L +R L       SA P                  AE+AR VW + ++ E C++S     A+ + V++R+ + +   +    LL LW+R ++ G     +   D         A S R+  +         GG RGR             XXXXXXXXXXXX    G G   GG   XXXXXXXXXXXXXXXXXX         E    DD   +R         IP ++RKL+  LP H GP  D + +++ LR+  LP +P   S G
Sbjct:  462 YQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPVWFKLLEFETCVASDRDP-ARVERVQQRIAEAFPRQAESHPLLRLWRRLNMFGTPPVEDSSDDLLRQRWEEPAVSYRLLDDGERDGRGMGGGRRGR------------KXXXXXXXXXXXXEVTVGAGDDGGGGREXXXXXXXXXXXXXXXXXXGEGQPAVSREARRRDDPYGARALQQRRLQSIPEYLRKLYQMLPIHTGPPIDPDTIIRGLRDNPLPPRPPGQSSG 808          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A835YU98_9STRA (Suf domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU98_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.520e-26
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = 0
Query:   57 LEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLALWKR 158
            LE+GL +H  ++AEPEY+L Y+D L+   DE NLRVL ERVL P+A+P ERA LVW+RFV+LEL  ++TGG++AKA+ +E R  + Y  +    GL   W R
Sbjct:    1 LEYGLGRHGSFIAEPEYILAYVDVLLHMRDEANLRVLLERVLSPAALPPERAPLVWDRFVELELWRTATGGNMAKAEAIEERRARFYPRHPTSHGLGRTWHR 102          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: K8YVA5_NANGC (Cleavage stimulation factor subunit 3 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVA5_NANGC)

HSP 1 Score: 112 bits (280), Expect = 1.270e-23
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 0
Query:    2 YLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHP-----SAMP------------------AERARLVWERFVQLELCLSS 124
            Y  +VRR  GKEAAR+ F AT+ LRR G++ Y  YLAHA +E HVN EP+VARRVL+HGLS H  ++ EPEYV+  ++ L++  DE+N+R L +R L       SA P                  AE+AR +W + ++ E C++S
Sbjct:  361 YQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPIWFKLLEFETCVAS 506          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A388JTY0_CHABU (Suf domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTY0_CHABU)

HSP 1 Score: 106 bits (265), Expect = 2.400e-21
Identity = 61/154 (39.61%), Postives = 93/154 (60.39%), Query Frame = 0
Query:    2 YLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLAL 155
            ++RF+RR  G +AAR+ F A R   ++ +  Y +Y+A A +EL ++ +P+VAR + E GL +   Y+ EP Y+LEY+DFL+Q ND+ N+R L ER L  S +P E +  VW++F++ EL      G L     VE+R  +V QD    +  L L
Sbjct:  514 FMRFIRRTEGVDAARKVFMAAR---KSPMCTYHVYVASAKMELCIDKDPKVARNIFELGLKK---YIHEPAYILEYLDFLMQLNDDRNIRALLERAL--SVLPPEESAEVWDKFLEFELLY----GDLQSVLKVEKRRREVLQDGGEGTNTLLL 655          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A1Y1I9U8_KLENI (Cleavage stimulation factor subunit 3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I9U8_KLENI)

HSP 1 Score: 94.4 bits (233), Expect = 2.740e-17
Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 0
Query:    3 LRFVRRNMGKEAARRAF-GATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQ--VYQDNSGPSGLLALWKR 158
            +RFV+R  G  AAR+ F  AT+    +    + +++A A +EL  N +P+ AR + E+GL +   Y+ EPEYVL+YIDFL  +ND+ N+RVLFER L+  A PA  A+ VW RFVQ E    +T G L+    VE+R  +  V        GL AL +R
Sbjct:  396 MRFVQRTEGMAAARKVFLTATK----SPACTHHVFVASAKLELAANKDPKTARNIFEYGLKK---YLHEPEYVLQYIDFLQHQNDDTNVRVLFERALNAIA-PAASAK-VWARFVQFE----ATYGDLSSLLKVEKRRREAAVAAGERAEDGLEALVRR 541          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: UPI001FB1586F (cleavage stimulation factor subunit 77 isoform X1 n=3 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1586F)

HSP 1 Score: 94.0 bits (232), Expect = 3.520e-17
Identity = 70/192 (36.46%), Postives = 101/192 (52.60%), Query Frame = 0
Query:    2 YLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSG----PSGLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILN 189
            YLRF+RR  G E AR+ F  T+   ++    Y +Y+A+A I   ++ E ++A  V E GL++   ++ EP Y+LEY DFL + NDE+N+RVLFER L  S++P +++  VW+RF Q E     T G LA    VERR  +     S      + L  +  R S  G  ++P    D     R     R I N
Sbjct:  349 YLRFLRRTEGVEIARKYFVETQ---QSPNCSYHVYVAYAMIAFCLDKERKIAHNVFEAGLNR---FMHEPGYILEYADFLSRLNDEQNIRVLFERAL--SSLPQDKSIEVWDRFAQFE----QTYGDLASMLKVERRRKEALSGTSEVGAFETSLKDIVSRYSFKG--LYPCSPADLDHLARQDLLSRNISN 526          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A163J8H2_ABSGL (Suf domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163J8H2_ABSGL)

HSP 1 Score: 91.7 bits (226), Expect = 2.330e-16
Identity = 58/175 (33.14%), Postives = 96/175 (54.86%), Query Frame = 0
Query:    2 YLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLALWKRCSVAGCG--MHPEGEVDS 174
            Y+RF RR  G +AAR  F   R   ++    Y +++A A +E H + +  +A ++   G+     +  +P Y+ EY+DFL+Q ND+ N R LFER L  + + AE+A +VW++F+  E    +  G LA AQHVE+R+++ + +++     LA +    +   G   H E   DS
Sbjct:  566 YMRFARRTDGIKAARTLFSKAR---KSPNRTYHVFVASALMEYHNSKDAGIAGKIFGLGIKS---FADDPAYICEYLDFLIQMNDDNNTRALFERSL--ATLSAEKATVVWKKFMDYE----NKYGDLASAQHVEKRLHEAHPESTQLDTFLARYSYLDLRPAGELQHTEDTSDS 728          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: G7KP74_MEDTR (Cleavage stimulation factor n=4 Tax=Trifolieae TaxID=163742 RepID=G7KP74_MEDTR)

HSP 1 Score: 90.9 bits (224), Expect = 3.610e-16
Identity = 56/154 (36.36%), Postives = 91/154 (59.09%), Query Frame = 0
Query:    2 YLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLAL 155
            ++RF+RR  G E AR+ F      R++    Y +Y+A+AS+   ++ +P++A  V E GL     ++ EP Y+LEY DFL++ ND++N+R LFER L  S++P E +  VW+RFV+ E     T G LA    VE+R  + + + +  +   +L
Sbjct:  341 FIRFLRRTEGVEPARKYF---LDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGLKH---FMHEPVYILEYADFLIRLNDDQNIRALFERAL--SSLPLEDSVEVWKRFVKFE----QTYGDLASMLKVEQRRKEAFGEEATAASESSL 482          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: L8GQL2_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQL2_ACACA)

HSP 1 Score: 90.9 bits (224), Expect = 3.770e-16
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 0
Query:    2 YLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLALWKR 158
            YLRF+RR  G +AAR+ F   +   +A    Y LY+A A +E H N   + AR V   GL +   ++ EP YVL Y+ FL+Q N++ N+R +FERVL  + M  ER   +W   ++ E       G LA  Q +E+R  Q++ +   P+ + +L +R
Sbjct:  406 YLRFLRRTEGPDAARKLFVKAK---KAPGTTYHLYVATAMLEYHANRNVDYARDVFNAGLKK---FIGEPTYVLHYLRFLIQLNEDNNVRAVFERVLGSAEMANERTAELWNALLEFEYA----AGDLASIQKLEKRRAQIFPELE-PASVPSLVQR 551          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMJ6_ECTSI2.530e-20595.43Suf domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CTB6_9STRA3.140e-3038.61Suf domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A835YU98_9STRA1.520e-2651.96Suf domain-containing protein (Fragment) n=1 Tax=T... [more]
K8YVA5_NANGC1.270e-2343.84Cleavage stimulation factor subunit 3 n=1 Tax=Nann... [more]
A0A388JTY0_CHABU2.400e-2139.61Suf domain-containing protein n=1 Tax=Chara brauni... [more]
A0A1Y1I9U8_KLENI2.740e-1742.14Cleavage stimulation factor subunit 3 n=1 Tax=Kleb... [more]
UPI001FB1586F3.520e-1736.46cleavage stimulation factor subunit 77 isoform X1 ... [more]
A0A163J8H2_ABSGL2.330e-1633.14Suf domain-containing protein n=1 Tax=Absidia glau... [more]
G7KP74_MEDTR3.610e-1636.36Cleavage stimulation factor n=4 Tax=Trifolieae Tax... [more]
L8GQL2_ACACA3.770e-1636.31Tetratricopeptide repeat domain containing protein... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.40.1040coord: 1..170
e-value: 2.3E-38
score: 134.1
NoneNo IPR availablePANTHERPTHR19980RNA CLEAVAGE STIMULATION FACTORcoord: 2..364
IPR008847Suppressor of forkedPFAMPF05843Sufcoord: 1..148
e-value: 3.9E-30
score: 105.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 1..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10196contigEcto-sp8_S_contig10196:1328..6447 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10196.318.1mRNA_Ecto-sp8_S_contig10196.318.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10196 167..6939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10196.318.1 ID=prot_Ecto-sp8_S_contig10196.318.1|Name=mRNA_Ecto-sp8_S_contig10196.318.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=373bp
MYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEP
EVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHP
SAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPS
GLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILNSRRGGNRGRDG
GDGNNRDRNNPQGGNSGGKDGGKDTGSGGGPAKGGSEKGGKAGRGGGGKD
GAPDKNASPGGGKGSENDDEGWSRGDSSVSPLIPPFMRKLFMALPRHIGP
QPDAEGLLKALRERALPGKPSAGSGGHKGKRRRNGSDDEDDGAGGLEAAP
HKKPVRDIFRQRMQANLTPHDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008847Suf
IPR011990TPR-like_helical_dom_sf