mRNA_Ecto-sp8_S_contig10196.318.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10196.318.1
Unique NamemRNA_Ecto-sp8_S_contig10196.318.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: D8LMJ6_ECTSI (Suf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ6_ECTSI)

HSP 1 Score: 784 bits (2024), Expect = 6.540e-276
Identity = 450/470 (95.74%), Postives = 453/470 (96.38%), Query Frame = 1
Query:    1 QLTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTTGHVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILNSRRGGNRGRDGGDGNNRDRNNPXXXXXXXXXXXXXXXSGGGPAKGGSEXXXXXXXXXXXXXXXXXXXXXXXXXXGSENDDEGWSRGDSSVSPLIPPFMRKLFMALPRHIGPQPDAEGLLKALRERALPGKPSAGSGGHKGKRRXXXXXXXXXGAGGLEAAPHKKPVRDIFRQRMQANLTPHDD 1410
            +LTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAA+YRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDR STTGHVMYLRFVRRNMGKEAARRAFGATR LRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQ VERRMNQVYQDNSGPSGLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILNSRRGGNRGRDGGDG NRDR+NP    XXXXXXXXXXX GGGPAKGGSE XXXXXXXXXXXXXXXXXXXXXXXXX      EGWSRGDSSVSPLIPPFMRKLFMALPRHIGPQPDAEGLLKALRERALPGKPSAGSGGHKGKR XXXXXXXXXGAGGLEAAPHKKPVRDIFRQRMQANLTPHDD
Sbjct:  331 ELTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAVYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRRSTTGHVMYLRFVRRNMGKEAARRAFGATRALRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQDVERRMNQVYQDNSGPSGLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILNSRRGGNRGRDGGDGTNRDRSNPQGGNXXXXXXXXXXXXGGGPAKGGSEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGWSRGDSSVSPLIPPFMRKLFMALPRHIGPQPDAEGLLKALRERALPGKPSAGSGGHKGKRXXXXXXXXXXGAGGLEAAPHKKPVRDIFRQRMQANLTPHDD 800          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A4D9CTB6_9STRA (Suf domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTB6_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.330e-49
Identity = 175/456 (38.38%), Postives = 240/456 (52.63%), Query Frame = 1
Query:   10 DEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTTGHVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHP-----SAMP------------------AERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLALWKRCSVAGCGMHPEGEVD--------SAFSDRMFFERREILNSRRGGNRGRDGGDGNNRDRNNPXXXXXXXXXXXXXXXSGGGPAKGGSEXXXXXXXXXXXXXXXXXXXXXXXXXXGSE---NDDEGWSRG-DSSVSPLIPPFMRKLFMALPRHIGPQPDAEGLLKALRERALPGKPSAGSGG 1272
            D   L+ RVR SY Q  ++  HF E+WY+ A YE    +   AA+++ +A   +P   LL +A A+LE+ RGR ++     K FL    ST G+V Y  +VRR  GKEAAR+ F AT+ LRR G++ Y  YLAHA +E HVN EP+VARRVL+HGLS H  ++ EPEYV+  ++ L++  DE+N+R L +R L       SA P                  AE+AR VW + ++ E C++S     A+ + V++R+ + +   +    LL LW+R ++ G     +   D         A S R+  +         GG RGR             XXXXXXXXXXXX    G G   GG   XXXXXXXXXXXXXXXXXX         E    DD   +R         IP ++RKL+  LP H GP  D + +++ LR+  LP +P   S G
Sbjct:  366 DPVALKDRVRLSYRQAFAYFYHFPEVWYEFAAYEQESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFLIQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPVWFKLLEFETCVASDRDP-ARVERVQQRIAEAFPRQAESHPLLRLWRRLNMFGTPPVEDSSDDLLRQRWEEPAVSYRLLDDGERDGRGMGGGRRGR------------KXXXXXXXXXXXXEVTVGAGDDGGGGREXXXXXXXXXXXXXXXXXXGEGQPAVSREARRRDDPYGARALQQRRLQSIPEYLRKLYQMLPIHTGPPIDPDTIIRGLRDNPLPPRPPGQSSG 808          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: K8YVA5_NANGC (Cleavage stimulation factor subunit 3 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVA5_NANGC)

HSP 1 Score: 174 bits (442), Expect = 6.520e-44
Identity = 100/242 (41.32%), Postives = 142/242 (58.68%), Query Frame = 1
Query:   10 DEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTTGHVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHP-----SAMP------------------AERARLVWERFVQLELCLSS 666
            D   L+ RVR SY Q  ++  HF E+WY+ A YE    +   AA+++ +A   +P   LL +A A+LE+ RGR ++     K FL    ST G+V Y  +VRR  GKEAAR+ F AT+ LRR G++ Y  YLAHA +E HVN EP+VARRVL+HGLS H  ++ EPEYV+  ++ L++  DE+N+R L +R L       SA P                  AE+AR +W + ++ E C++S
Sbjct:  265 DPVALKDRVRLSYRQAFAYFYHFPEVWYEFAAYEQESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFLIQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPIWFKLLEFETCVAS 506          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A388JTY0_CHABU (Suf domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTY0_CHABU)

HSP 1 Score: 155 bits (392), Expect = 7.600e-36
Identity = 87/255 (34.12%), Postives = 147/255 (57.65%), Query Frame = 1
Query:    1 QLTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTTG--HVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLAL 759
            Q  D      RV  +Y QCL +L H+ ++WY+ A ++   G+ D A  ++++A+  +P S +L  A A+ +E  G + +A + + A +++  +     ++ ++RF+RR  G +AAR+ F A R   ++ +  Y +Y+A A +EL ++ +P+VAR + E GL +   Y+ EP Y+LEY+DFL+Q ND+ N+R L ER L  S +P E +  VW++F++ EL      G L     VE+R  +V QD    +  L L
Sbjct:  413 QRLDAAMCAKRVAFTYEQCLMYLYHYPDMWYNYATWQAEQGQHDPAVRVFQRALMALPDSAVLHYAFAEYQESNGNVRDARSVYDALIRNDAAANALAYIQFMRFIRRTEGVDAARKVFMAAR---KSPMCTYHVYVASAKMELCIDKDPKVARNIFELGLKK---YIHEPAYILEYLDFLMQLNDDRNIRALLERAL--SVLPPEESAEVWDKFLEFELLY----GDLQSVLKVEKRRREVLQDGGEGTNTLLL 655          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A5E4FC55_PRUDU (PREDICTED: cleavage stimulation factor n=2 Tax=Amygdaloideae TaxID=171637 RepID=A0A5E4FC55_PRUDU)

HSP 1 Score: 152 bits (384), Expect = 7.820e-36
Identity = 91/254 (35.83%), Postives = 143/254 (56.30%), Query Frame = 1
Query:    1 QLTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTTG--HVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNS--GPSGL 750
            Q  +      R+  +Y QCL HL H+ ++WYD A +    G  D A  +++++++ +P S++LR A  +LEE RG I+     +++ L D  +TT   H+ ++RF+RR  G EAAR+ F      R++    Y +Y+A+A +   ++ +P++A  V E GL +   ++ EP Y+LEY DFL + ND+ N+R LFER L  S++P+E +  VW+RF   E     T G LA    VERR  +        GPS L
Sbjct:  255 QRIENGSSNKRIIFTYEQCLMHLYHYPDLWYDYAMWHAKSGSIDAAIKVFQRSLKALPDSEMLRYAYGELEESRGAIQPTKKIYESLLGDGVNTTALAHIQFIRFLRRTEGVEAARKYF---LDARKSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKR---FMHEPVYILEYADFLTRLNDDRNIRALFERAL--SSLPSEESVEVWKRFTSFE----QTYGDLASMLKVERRKKEALSGTGEEGPSSL 496          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A445FD46_GLYSO (Cleavage stimulation factor subunit 77 isoform C n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FD46_GLYSO)

HSP 1 Score: 151 bits (382), Expect = 1.290e-35
Identity = 88/241 (36.51%), Postives = 143/241 (59.34%), Query Frame = 1
Query:    1 QLTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTT--GHVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQ 717
            Q  D      R+  +Y QCL H+ H+ +IWYD A +    G  D A  ++++A++ +P S++LR A A+LEE RG I+ A   +++ + D  S T   H+ ++RF+RR  G EAAR+ F      R++    Y +Y+A+A++   ++ +P++A  V E GL +   ++ EP Y+LEY DFL++ ND++N+R LFER L  S++P E +  VW++F + E     T G LA    VE+R  +
Sbjct:  245 QRIDTASSNKRIIFTYEQCLMHMYHYPDIWYDYATWHAKGGLIDSAIKVFQRALKALPDSEMLRYAYAELEESRGAIQAAKKIYESVMGDGDSATTLSHIQFIRFLRRTEGVEAARKYF---LDARKSPSCTYHVYVAYATMAFCLDKDPKMAHNVFEAGLKR---FMHEPVYILEYADFLIRLNDDQNIRALFERAL--SSLPPEESVEVWKKFTKFE----QTYGDLASMLKVEQRRKE 473          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: G7KP74_MEDTR (Cleavage stimulation factor n=4 Tax=Trifolieae TaxID=163742 RepID=G7KP74_MEDTR)

HSP 1 Score: 153 bits (386), Expect = 1.880e-35
Identity = 90/255 (35.29%), Postives = 147/255 (57.65%), Query Frame = 1
Query:    1 QLTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTTG--HVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPSGLLAL 759
            Q  D      RV  +Y QCL +L H+ ++WYD A +    G  D A  +++++++ +P S++LR A A+LEE RG I+ A   ++  L D  + T   H+ ++RF+RR  G E AR+ F      R++    Y +Y+A+AS+   ++ +P++A  V E GL     ++ EP Y+LEY DFL++ ND++N+R LFER L  S++P E +  VW+RFV+ E     T G LA    VE+R  + + + +  +   +L
Sbjct:  240 QRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSIDAAIKVFQRSLKALPDSEMLRYAYAELEESRGAIQAAKKIYENLLGDSENATALAHIQFIRFLRRTEGVEPARKYF---LDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGLKH---FMHEPVYILEYADFLIRLNDDQNIRALFERAL--SSLPLEDSVEVWKRFVKFE----QTYGDLASMLKVEQRRKEAFGEEATAASESSL 482          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A5E4FCZ5_PRUDU (PREDICTED: cleavage stimulation factor n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FCZ5_PRUDU)

HSP 1 Score: 152 bits (384), Expect = 2.210e-35
Identity = 91/254 (35.83%), Postives = 143/254 (56.30%), Query Frame = 1
Query:    1 QLTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTTG--HVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNS--GPSGL 750
            Q  +      R+  +Y QCL HL H+ ++WYD A +    G  D A  +++++++ +P S++LR A  +LEE RG I+     +++ L D  +TT   H+ ++RF+RR  G EAAR+ F      R++    Y +Y+A+A +   ++ +P++A  V E GL +   ++ EP Y+LEY DFL + ND+ N+R LFER L  S++P+E +  VW+RF   E     T G LA    VERR  +        GPS L
Sbjct:  255 QRIENGSSNKRIIFTYEQCLMHLYHYPDLWYDYAMWHAKSGSIDAAIKVFQRSLKALPDSEMLRYAYGELEESRGAIQPTKKIYESLLGDGVNTTALAHIQFIRFLRRTEGVEAARKYF---LDARKSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKR---FMHEPVYILEYADFLTRLNDDRNIRALFERAL--SSLPSEESVEVWKRFTSFE----QTYGDLASMLKVERRKKEALSGTGEEGPSSL 496          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: A0A4Y7IRX5_PAPSO (Suf domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IRX5_PAPSO)

HSP 1 Score: 153 bits (386), Expect = 2.250e-35
Identity = 97/290 (33.45%), Postives = 155/290 (53.45%), Query Frame = 1
Query:    1 QLTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKD--RGSTTGHVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQ--DNSGPSGLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREIL 858
            Q  D +   +R+  SY QCL +L ++ ++WYD   +    G  D A  IY KA++V+P S+LL+ A A+LEE RG I+ A   +++ + D    S   H+ ++RF+RR  G EAAR+ F   R         Y +++A+A +    + +P++A  V E G+ +   ++ EPEY+LEY DFL + ND+ N+R LFER L+   +P E++  +W+R+ Q E     T G+LA    VE+R  +        G S L  +  R S  G       ++D       +  R+E+L
Sbjct:  271 QRIDSESSNSRIILSYEQCLMYLYYYPDVWYDYVTWHADNGSMDLAVKIYEKALKVLPDSELLKYAYAELEESRGEIQPAKKIYESLIGDGVNASALAHIQFIRFLRRTEGIEAARKYFVDARSYPNC---TYHVFVAYAKMAFCQDKDPKLAHNVFEAGMKR---FMHEPEYILEYADFLCRLNDDTNVRALFERALN--TLPPEKSVEIWKRYTQFE----QTYGNLASILKVEQRRKEALSRTGEDGSSALHDVVSRYSFMGLRPCSSKDLD-------YLARQELL 541          
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Match: UPI0010161480 (cleavage stimulation factor subunit 77 isoform X2 n=4 Tax=Vigna unguiculata TaxID=3917 RepID=UPI0010161480)

HSP 1 Score: 152 bits (383), Expect = 4.730e-35
Identity = 88/241 (36.51%), Postives = 144/241 (59.75%), Query Frame = 1
Query:    1 QLTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAIYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRGSTTG--HVMYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQ 717
            Q  D      R+  +Y QCL ++ H+ +IWYD A +  + G  D A  ++++A++ +P S++LR A A+LEE RG I+ A   +++ L D  + T   H+ ++RF+RR  G EAAR+ F      R++    Y +Y+A+A++   ++ +P++A  V E GL +   ++ EP Y+LEY DFL++ ND++N+R LFER L  S++P E +  VW++F Q E     T G LA    VE+R  +
Sbjct:  245 QRIDTASSNKRIIFTYEQCLMYMYHYPDIWYDYATWHATSGSIDAAIKVFQRALKALPDSEMLRYACAELEESRGAIQAAKKIYESLLGDGVNATSLSHIQFMRFLRRTEGVEAARKYF---LDARKSPTCTYHVYVAYATMAFCLDKDPKMAHNVFEAGLKR---FMHEPFYILEYADFLIRMNDDQNIRALFERAL--SSLPPEESVEVWKKFTQFE----QTYGDLASMLKVEQRRKE 473          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10196.318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMJ6_ECTSI6.540e-27695.74Suf domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CTB6_9STRA2.330e-4938.38Suf domain-containing protein n=2 Tax=Monodopsidac... [more]
K8YVA5_NANGC6.520e-4441.32Cleavage stimulation factor subunit 3 n=1 Tax=Nann... [more]
A0A388JTY0_CHABU7.600e-3634.12Suf domain-containing protein n=1 Tax=Chara brauni... [more]
A0A5E4FC55_PRUDU7.820e-3635.83PREDICTED: cleavage stimulation factor n=2 Tax=Amy... [more]
A0A445FD46_GLYSO1.290e-3536.51Cleavage stimulation factor subunit 77 isoform C n... [more]
G7KP74_MEDTR1.880e-3535.29Cleavage stimulation factor n=4 Tax=Trifolieae Tax... [more]
A0A5E4FCZ5_PRUDU2.210e-3535.83PREDICTED: cleavage stimulation factor n=4 Tax=Pru... [more]
A0A4Y7IRX5_PAPSO2.250e-3533.45Suf domain-containing protein n=3 Tax=Papaver somn... [more]
UPI00101614804.730e-3536.51cleavage stimulation factor subunit 77 isoform X2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10196contigEcto-sp8_S_contig10196:167..6939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score599.0
Seed ortholog evalue1.5e-168
Seed eggNOG ortholog2880.D8LMJ6
Model size1905
KEGG koko:K14408
KEGG Pathwayko03015,map03015
Hectar predicted targeting categorymitochondrion
Exons9
EggNOG free text desc.mRNA processing
EggNOG OGsCOG0696@1,KOG1914@2759
Cds size1119
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10196.318.1prot_Ecto-sp8_S_contig10196.318.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10196 1328..6447 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.6146417-UTR-Ecto-sp8_S_contig10196:166..2501681143117.6146417-UTR-Ecto-sp8_S_contig10196:166..250Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10196 167..250 +
1681143117.6271257-UTR-Ecto-sp8_S_contig10196:765..8461681143117.6271257-UTR-Ecto-sp8_S_contig10196:765..846Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10196 766..846 +
1681143117.639473-UTR-Ecto-sp8_S_contig10196:1198..13271681143117.639473-UTR-Ecto-sp8_S_contig10196:1198..1327Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10196 1199..1327 +
1681143117.72155-UTR-Ecto-sp8_S_contig10196:6447..69391681143117.72155-UTR-Ecto-sp8_S_contig10196:6447..6939Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10196 6448..6939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.6489205-CDS-Ecto-sp8_S_contig10196:1327..13381681143117.6489205-CDS-Ecto-sp8_S_contig10196:1327..1338Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10196 1328..1338 +
1681143117.657101-CDS-Ecto-sp8_S_contig10196:2325..25631681143117.657101-CDS-Ecto-sp8_S_contig10196:2325..2563Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10196 2326..2563 +
1681143117.6654594-CDS-Ecto-sp8_S_contig10196:3588..37621681143117.6654594-CDS-Ecto-sp8_S_contig10196:3588..3762Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10196 3589..3762 +
1681143117.6748815-CDS-Ecto-sp8_S_contig10196:4494..46071681143117.6748815-CDS-Ecto-sp8_S_contig10196:4494..4607Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10196 4495..4607 +
1681143117.6867888-CDS-Ecto-sp8_S_contig10196:4906..49931681143117.6867888-CDS-Ecto-sp8_S_contig10196:4906..4993Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10196 4907..4993 +
1681143117.69765-CDS-Ecto-sp8_S_contig10196:5439..57781681143117.69765-CDS-Ecto-sp8_S_contig10196:5439..5778Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10196 5440..5778 +
1681143117.711649-CDS-Ecto-sp8_S_contig10196:6290..64471681143117.711649-CDS-Ecto-sp8_S_contig10196:6290..6447Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10196 6291..6447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10196.318.1

>prot_Ecto-sp8_S_contig10196.318.1 ID=prot_Ecto-sp8_S_contig10196.318.1|Name=mRNA_Ecto-sp8_S_contig10196.318.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=373bp
MYLRFVRRNMGKEAARRAFGATRGLRRAGLVGYRLYLAHASIELHVNGEP
EVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHP
SAMPAERARLVWERFVQLELCLSSTGGSLAKAQHVERRMNQVYQDNSGPS
GLLALWKRCSVAGCGMHPEGEVDSAFSDRMFFERREILNSRRGGNRGRDG
GDGNNRDRNNPQGGNSGGKDGGKDTGSGGGPAKGGSEKGGKAGRGGGGKD
GAPDKNASPGGGKGSENDDEGWSRGDSSVSPLIPPFMRKLFMALPRHIGP
QPDAEGLLKALRERALPGKPSAGSGGHKGKRRRNGSDDEDDGAGGLEAAP
HKKPVRDIFRQRMQANLTPHDD*
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mRNA from alignment at Ecto-sp8_S_contig10196:167..6939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10196.318.1 ID=mRNA_Ecto-sp8_S_contig10196.318.1|Name=mRNA_Ecto-sp8_S_contig10196.318.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6773bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10196:167..6939+ (Ectocarpus species8 EcLAC_412)
CAGTTGACGGACGAGGACGGGCTGCGGGCGAGAGTGCGCCACAGTTACGC TCAGTGCCTCAGCCACCTGAGACATTTCTGCGAGGTGTGTGTGTATGTGA ACGGTCGAGGAGGCGGGTAGTGCTCGTGCTGTTGCCGCTGTTCCTGCTGC TGTCGTTGTACTGTCGTTGTATTGTCGTTTGGTTGTGTTGAAGTATGTTG CAATGCTTCCGCAAGAATGCTGTGTTTGCTTGTTTGTTTGTTGCACTGCT TCCGAACCAATACTGCTGTGTGTCGAGGATTTTGTTTTCAGTTGTCCTCC TTGCTGCTGGCACTCTCTCGCGTGGGAGAACAAACAAGAGGTATTGACGC CCCGAGATCATTTGACCTTTCGAAAGAGCTGCCAGGGAAACAAAAAAAAT GTTCATAGCGCGCCCGTGGGCGTAATGATGTGCGGCTCGGTGCACATCCA CTTCTTCGGTAGAAACGTGTTGTGCAGCAGGCAAACGTCTTGCTGTGATG AGTGAAAGTTTTGTTTCTATCGCTACGACGACACGCACAAACGTTTGAAC GAACCGTGTTGAGTGTTGCTATTAATATGTGCTCTCGCTCTCCCGACAGA TCTGGTACGACCTGGCTGAGTACGAGTACTCCCTGGGCGAGGCCGATCGC GCTGCCGCCATCTACAGGAAGGCGGTGGAGGTACACCATCCAGGATCATG TCATATACCCGTTTTTTTTGCTTCTTTTTTTATATCTCTCCTGTTTTTTT TGTCTACACAGTATGTTGCTTTTTTGCTGCCGAGTCCCGGGTTTTCCTCG CGAACCGCAGGATGCGTCGAGCCTTGGACACCTCGCACAGAGCACCGAAT CGTAAGTTTTGTCAGTCAGAACAACTGAGTAAGTCCACTGGTAAGTTTGT CAGGAAATGGTAAGTACAATAGAGGTATAGCTCCAAGGGCGTCCGGTTCC GGTAATATGACACGTGCGCACGCCTGCTCTTTCCTCCGTTGTTCTCACCT GCCACGCCCCCCCCCCCCCCCTCCTTTTCCAGGTGATCCCCGGGAGTGAC CTGCTGCGCGTGGCGCAGGCGGACTTGGAAGAGCGGAGGGGGCGCATCGA GGAGGCCGATGCCGCCTGGAAGGCGTTCCTCAAGGACCGTGGCAGCACCA CCGGGCACGTCATGTACCTCAGGTCTGGCTCTGTTTTGCATACATACATA TATATTTTTTTTCCGACCGAGTTCAGTTCTAGGTCTCTTTCTTTTATTCT GTTCTTTTATTTTCCTTCCGACGAGTTCGTCTTTTTTTTTTTTTTTTTTT ACTGCGTTCGTTGTATTTTTCTATCGATCTCGTCCTGCGTGTTTCCCGTC TTCGTTCGTTTTGTCTGGTTTGGTTTGGTTTGGTTTGGCTACCGGTACCG CCATCCCACCCTCCTCGAAACGAAACGGCAAGCCAACATTCGATGCTGTT GTGTTCCGTGTTGTGAGTGAAGGGTCGGCGGCGCCGCCGCCGCCGGACCT GGCTCTTGTTGGGCGGGCACTCGCACGTCCGGGACCCACTGGGCCACCGG ACCATCCTATCCTCCGTCTTCGTTTCGCATTTGTGTCTCCATCAACACAG CACCATGCGAGGGCGGAAACACACAAAAAAAAACTCCACCATTGCAGAAC CGATACTTGTAGCGTCATGGGACCCACTCCCGGCGTATGTATCGGAGGGA AGCAAGCGTATCAATAGTTCGAGACAGCAGACCACCCGCCCCCGCTTCTC TTGCCCACATTTCGGGAAATACATGCATCCCGCGTGGTTGTTTTGCGTGT GCATTACTGCTTGCATACATGCGTGTCTCCACCAACACAACACAGCACAA CACCATGCGCGTATGCTACGGAAACACAAAAAATTCACTTACTATCCAGA TAGCAACAAGACCCCCTCTCTCTCGCTCTCTCTCGTACCCAGATCTTGGG AAACACCGACGCTCCATGCTCGATGCCCGGTTCGTGTTTGGGTACATGCG CGTCGTCTCCGTCTCCGTCAACACCGTACGAGTGCTGTACGGAAACACAA GACTCCAACTGAATCAGACCCCCCCCCCCCCCCCCCCCCACACCACCCCC CCCCCCCCCCCTACCAAACACACATTTTGGAAAACACCGACGCTCGACGA ATCGGACAGGTTTGTTCGGCGCAACATGGGCAAGGAGGCGGCCCGGCGGG CGTTCGGCGCCACCCGCGGGCTGCGGCGGGCGGGGCTGGTGGGGTACCGG CTCTACCTCGCGCACGCCTCCATCGAGCTCCACGTGAACGGCGAGCCGGA GGTGGCGAGGAGGGTCCTGGAGCACGGCCTGTCCCAGCACGAGGGGTACG TCGCGGAGCCGGAGTACGTGCTCGAGTACATCGACTTCCTGGTGCAGGTG GGGGTTAGCTTCCCCCGGTTGCGTGCTCCATGCGACGTGTTGTTTGCTTC ATAGTACAACCCTGCAAAGGCTTACTGGACCACCCTTCGCCCGCGAGAAA TTAAGTCTCATGAGGAAACAGAACAAGGGGAGGGGGGTACGCAGACTTAT TTCATGACCCAGCGTTCCCCGATTGCATGCTTTATCCAACAGTTTACCTA ATAGAAGAACCCTGCAAAGGCTGCTGGTACGGATGCATGCCTCTTTTGTT TTGTTTTTTGCTGGGAAATCGTAACCTCAACCCCTAAGATGGCATGACTG TTTTGTTTTTTTTTGGCGGAGAAGCGTAACCTCAACACCCAGTAGTAACA CGACGCGATCATTTTTTTGGTTCCAAGATGCAGGATGAACGTTTTTCGCC TACTGTAAAGTGGAAATTTCCTATTCGTGGAAATCACTTGTCGCCTTCAG AGACAGGGCGAAGATTTTCACCTAAAATGGAAATCACATTTCGCATTTCG CCTAATGTGGAGATCACATTTCGCCTAATGTGGAAACCACTTTTCGCCTT AAAAGGAAATCGCTTTTCGTTAAGATGGAAATAACCCATTCGCCTAAAGT GGAAAATCGCCTTTTGCCTCAAGTGGAAATCCCATTTGGCCCAAAGTGGA GATCGCATTTCGCCTGCAGCGGAAATCACATTTCGCCCAAAGTGGAAATC ACATTTCGCCTAAAGTGGAAATCACATTTCGCCTAAAGATGCAGGCCGAG ATACTGTAGGCGGAAAATTCGACGGTGTGAGAATCCATTTTGGCGTAGGG CACCAACGCTGTGGAGATGGTGGAACCAATAACAATGAGGGTTCGCTATA CAATTCCCCCCCCCCCTCGCGTCTGTTGACTCCCAGAACCCCAAGGACCG ATTGGCCATAATCTATGATCGGTCCTGTGTGGAAAAAATGCTCCGTCCTC TCGACGACGCGTGGTCAATGGTCTATCCACTAGCATGCAAACCATGAGTA CCTCCCCCCGCCTTCCGGCCAGCGTAACGACGAGGAGAACCTTCGGGTGC TGTTCGAGCGAGTGCTGCACCCGTCAGCTATGCCTGCGGAGAGAGCTAGG CTTGTGTGGGAGCGGTTCGTGCAGCTAGAGCTGTGCTTGTCAAGTACGGG GGGGAGTTTGGCCAAGGCTCAACATGTCGAGAGACGCATGAACCAGGTGT GTTTTGTTGCTGTGCTGGTGGAAGTCATGGCTGCTGCGTTCTGCTGCTGC TGCTGCTGCTGCCTGCAGCCGTGCGCTTGCTCGAAGAAGTACTCTGAGCA GGAGTTGGAGGAGTCGAATCGGTCCTCTCAGTTGCTTGAATTGGGAATCA TACGTCCTCTTCTAGCATCCGGCTTCTGACAACAAATCAACGCCCCGTGC TGCTTGAAAATCGACAAGGAACGAAACGCTCTTGTTGTACTGCTCTTGTT GCTTTCGTTGCAATGTCATCAACGAAACCTGCACCCCTCCCGTCTGCTAG TATGCCATGCCGTCACCCACTCCCCGGGAAAGTGTCGGCTCAAGCGGGTT TCCCGAAGAGTTTATTTTTTTACCGTACAAGTAGTATGTTTCGGCCGCAC CGTCTTTGCGGAAGTATTTCTTGTAGGGTCAAGAACTTCAGCCTAGCCGG TTCTTTTGCCAAGCCGGTAAACCGGTGTTTTTCCGAACACGGATCTGGTC GAAAATTCCCACGAACGTTGCTTGGAGTCCCGGGTGAGAGGTTGAGCCTG AACCCGTACGAGGGCTTGTGGACCCGAAAGCGCAGAAGGACAAACCAACT CATATCACCATTTTACAGGAAATGGAAGTGCGACAGCGGTAGATGGAGTA GATTTTGGTAGTCCAAGGTGTACTCAAACCTCCGTCCCCGCACTCTTCGA CGTTGATTGTTGGCCCCGAGGTACCCAGGTCTACCAGGATAATTCTGGCC CGTCGGGACTGCTAGCGTTGTGGAAACGATGTTCTGTGGCGGGGTGCGGG ATGCATCCGGAGGGAGAGGTGGACTCGGCTTTTAGCGACAGGTAATAGTG AAAGCCTTGAATGCGCCTAGTTGTACCAGGAAGGACTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCACGTTTTCGCAATATATGGTGCTTTGAACCA CACTTGTTGCTATTATAATTTTTTGTTTTTCGTTAGAACCTGTTCCCCTC CCGCTATGCCGTGCCGACCATTCTTTTTTTCTTTTGCGGCGTTTTTTTCG AGGCTTGAAAAGCTGAGCTAGCTTACACATACCTTTGCCTTGCTTTCGCC GCCTTCCTTTCCTCGACCCACCTTTTCGTTTTGTCCGCAGGATGTTCTTC GAGAGACGCGAAATCTTGAACAGCCGTAGAGGCGGGAACAGGGGACGGGA TGGGGGCGACGGGAACAACCGAGACAGGTATTATGCTGTGCTGTACAAAA GGCGCGGTCTTGTTGGTGTACTATTCTCTTCCGTCCCGCGTTCCTGCAAA CGTGTGTGCGCCCGCTCCACGGATCTCGCAAGAGCCTATAGCGCGGCGCG CGTGTTCAGACGGTACATACCCATGGGTGATATTCGTCGCAATATTCGTT GTCCTGACTAAATACGTACACGGATCACGCCCTGGCTGCCTGCGGAGGAT GGCGTTTGTTGAGGCTTTTTTGCTCCGCGTCGGTTCGGTGTTGGGGGAGG GTCTTGTGGACATGCTAGGAAAGAGGCGATAAGTTCGACCTGCTGCACAC CACGGTGCTCTCAAGCTCGGTGTGCTCGAGTACAATCCATCATGAACCAC GACATCATCCACTGTTGGGTGGGACACTCATCAACCCCCCGATGCGCTTA ATTCTTGCGTCGCCACCTGACAGGAACAATCCCCAAGGGGGAAATAGCGG CGGGAAAGATGGAGGCAAGGACACCGGCAGCGGAGGGGGCCCCGCGAAAG GGGGTTCAGAAAAGGGGGGGAAGGCGGGGCGGGGCGGGGGCGGCAAGGAC GGCGCCCCCGATAAGAACGCCTCCCCCGGGGGAGGCAAAGGGAGCGAGAA CGACGACGAGGGGTGGTCACGGGGGGACTCGAGCGTATCCCCGCTGATCC CGCCCTTCATGAGAAAGCTGTTCATGGCCCTGCCGCGCCACATCGGGCCC CAGCCGGATGCTGAGGGTCTCCTGAAGGCGCTGAGGGAGAGGGCTCTCCC GGGCAAACCGAGGTACTATACATGGTACATGATGTTTGTTTCTTGTGTGT TTTCGGTGGAGAAGGGGGGTCGAATTGTTTTGCCTTCTTTTCGGCTGCGT GCACCTGATGCCTTCCGTGAGGAAGGGTCGGCCTCCCAAAATCGATTTTC TGTGTCGATGCGAGTTTCTGTGTTGGGCCGACAAGCCGAAACGACTAGAG CGACGTGGAAAACCGGCCGCCACGACGAAATATCTACTTGCTCCTGCACC TGTTGCGTTTGCGTACATAGTCCTGGTGCTCCTCTCTCGCATTCCCCCAC TACGCCACCGCCACCGCCACCGCTATTTCTCGTACGAGATGAGTCTTTGC TTCTGCCGATTACACCGCGCTTCACTCACGATGATTTTGCTGCCACCCCC CCCGTTCTAAATGATTTCACCCCCGCCGATTTTCGATGATGTCCTCCCCC CCGTGCTCAAAACGAATTAATTTATCCCCGGCCCCGCCGCCCCGACTTCA ATATTTCCCTGAAACGGACAACAGTGCCGGCTCCGGCGGCCACAAGGGCA AGCGGCGGCGAAACGGCAGCGACGACGAGGACGACGGCGCTGGCGGGCTC GAGGCCGCTCCTCACAAGAAGCCCGTCAGGGACATCTTCCGGCAGCGGAT GCAGGCCAACCTCACGCCGCACGACGACTGATAGATGGGCGCTGCTCGCT TCAAGATGACAGTGTCGGTTGTTGACGTTGCTGAGAGGACGCTGGTCCTG ATGGTGATGATGATGCAGTAGAGTGCTATTTATATCTTTCGCTTGTCCTT GTCATGATTCTGAACCATGTTGATCACGGTTGCCGTGTCTTCTGGTCGCG GGGTAACCTTCCTTGATGTGAAGGGTGTGCAAGGCGCGCCGACCTGGGGA TTTGAGGCGCCTTACATCCTCTCCCTTTCCAGGTGGCGGAGGTCGAAGAC AACGGATGGATGTTGTTTCCCCGACGTTTTTGTCGTCTACTCTCGGCACT GTTGGACGTGCTGTGTCGCTGCTGCTGTGTTTGTGTAGGTAATTTCGGAT TTGAGACGCATCTAGATTTCGGAACGAAATCGGGAGGAGTCAGATATTCC GGAAAGGATGTTGGAAAATGGCCCCACCTAGTTCAGTCCCCCTTTTCTCT CCCGAAATACGCCGGAGCTATCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10196:167..6939+

>mRNA_Ecto-sp8_S_contig10196.318.1 ID=mRNA_Ecto-sp8_S_contig10196.318.1|Name=mRNA_Ecto-sp8_S_contig10196.318.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1119bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10196:167..6939+ (Ectocarpus species8 EcLAC_412)
ATGTACCTCAGGTTTGTTCGGCGCAACATGGGCAAGGAGGCGGCCCGGCG
GGCGTTCGGCGCCACCCGCGGGCTGCGGCGGGCGGGGCTGGTGGGGTACC
GGCTCTACCTCGCGCACGCCTCCATCGAGCTCCACGTGAACGGCGAGCCG
GAGGTGGCGAGGAGGGTCCTGGAGCACGGCCTGTCCCAGCACGAGGGGTA
CGTCGCGGAGCCGGAGTACGTGCTCGAGTACATCGACTTCCTGGTGCAGC
GTAACGACGAGGAGAACCTTCGGGTGCTGTTCGAGCGAGTGCTGCACCCG
TCAGCTATGCCTGCGGAGAGAGCTAGGCTTGTGTGGGAGCGGTTCGTGCA
GCTAGAGCTGTGCTTGTCAAGTACGGGGGGGAGTTTGGCCAAGGCTCAAC
ATGTCGAGAGACGCATGAACCAGGTCTACCAGGATAATTCTGGCCCGTCG
GGACTGCTAGCGTTGTGGAAACGATGTTCTGTGGCGGGGTGCGGGATGCA
TCCGGAGGGAGAGGTGGACTCGGCTTTTAGCGACAGGATGTTCTTCGAGA
GACGCGAAATCTTGAACAGCCGTAGAGGCGGGAACAGGGGACGGGATGGG
GGCGACGGGAACAACCGAGACAGGAACAATCCCCAAGGGGGAAATAGCGG
CGGGAAAGATGGAGGCAAGGACACCGGCAGCGGAGGGGGCCCCGCGAAAG
GGGGTTCAGAAAAGGGGGGGAAGGCGGGGCGGGGCGGGGGCGGCAAGGAC
GGCGCCCCCGATAAGAACGCCTCCCCCGGGGGAGGCAAAGGGAGCGAGAA
CGACGACGAGGGGTGGTCACGGGGGGACTCGAGCGTATCCCCGCTGATCC
CGCCCTTCATGAGAAAGCTGTTCATGGCCCTGCCGCGCCACATCGGGCCC
CAGCCGGATGCTGAGGGTCTCCTGAAGGCGCTGAGGGAGAGGGCTCTCCC
GGGCAAACCGAGTGCCGGCTCCGGCGGCCACAAGGGCAAGCGGCGGCGAA
ACGGCAGCGACGACGAGGACGACGGCGCTGGCGGGCTCGAGGCCGCTCCT
CACAAGAAGCCCGTCAGGGACATCTTCCGGCAGCGGATGCAGGCCAACCT
CACGCCGCACGACGACTGA
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