prot_Ecto-sp8_S_contig1019.312.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp8_S_contig1019.312.1
Unique Name	prot_Ecto-sp8_S_contig1019.312.1
Type	polypeptide
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length	314

Homology

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: D7G8V9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V9_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 1.030e-125
Identity = 211/313 (67.41%), Postives = 211/313 (67.41%), Query Frame = 0

Query:    1 MKSVIAFSAVLASASAFVPSASFVGSPVSSVARPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCXXXXRFFWLCRLVVFIAVCVSSLALVPWVFPFSRQRLSVMAIVLLHTLRFRPPDVVLVFLLVAFTALTDAILCAASYGTHTLLTVVIWGHVFVYVQIVMFIGFLEYVISQIVAKPGYIPGDYVGANDLFSEEGPHSQWETYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGIH 313
            MKSVIAFSAVLASASAFVPSASFVGSPVSSV RPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLF                                                                                                     QIVMFIGFLEYVISQIVAKPGYIPGDYVGANDLFSEEGPHSQWETYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGIH
Sbjct:    1 MKSVIAFSAVLASASAFVPSASFVGSPVSSVTRPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLF-----------------------------------------------------------------------------------------------------QIVMFIGFLEYVISQIVAKPGYIPGDYVGANDLFSEEGPHSQWETYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGIH 212

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: A0A7S0XDX8_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDX8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.300e-23
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0

Query:   46 DMVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            ++VGASAPLGFFDP GFSKG + E L  YRE+ELKHGR AMLAV+G+LTQE +HP Y G LS NP+ A  EVPP G  Q
Sbjct:   37 ELVGASAPLGFFDPFGFSKGVSDETLFKYRESELKHGRVAMLAVLGWLTQERFHPFYEGKLSGNPLVAFGEVPPLGFVQ 115

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: I2CPJ1_NANGC (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ1_NANGC)

HSP 1 Score: 103 bits (258), Expect = 5.360e-23
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = 0

Query:    5 IAFSAVLASASAFVPSASFVGSPVSSVARPASSTAVSMAASDMVGASAPLGFFDPMGFS-KGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            +A +  +AS SAFVP A          + P +   V+M    M+G+SAP   FDP+GF+ K   + LN YRE+ELKHGR AMLAV+G++ QE WHPLY+G LSSNP+KA+TEVP  G  Q
Sbjct:    9 LAAAVTMASVSAFVPPAP---------SAPRTRGVVNMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWVVQEVWHPLYDGKLSSNPLKALTEVPLIGWAQ 119

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: A0A7S0E1K9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E1K9_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 5.350e-21
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 0

Query:   27 PVSSVARPASST-AVSMAASDMVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            P   + RPASS+ AV M    ++G  APL +FDP+GFSK  + E +  YREAELKHGR AMLA  G +TQ+ WHPL++G LS+NP+ AI + P  G+ Q
Sbjct:   13 PTPVLVRPASSSVAVQMKVGGLIGDCAPLAYFDPLGFSKDASPETMKKYREAELKHGRVAMLAAWGMITQDAWHPLFDGKLSANPLLAIIQTPKLGVIQ 111

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: A0A7S3AG67_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG67_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 5.610e-21
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 0

Query:   23 FVGSPVSSVA-----RPASS--TAVSMAASDMVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            F  SPV+ VA     RPA +  T+V+M   DMVG+SAPLGFFDP+GFSK  + E +  +REAELKHGR AMLAV G +T + +HPL+ G  SSNP+ A+T+VP  G  Q
Sbjct:   18 FSSSPVALVASGAMLRPALAPMTSVNMKI-DMVGSSAPLGFFDPLGFSKDASPETMKKFREAELKHGRVAMLAVFGMITADKFHPLFGGQCSSNPLLALTQVPKLGWLQ 125

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: A0A7S3IA89_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3IA89_9SPIT)

HSP 1 Score: 96.3 bits (238), Expect = 2.040e-20
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 0

Query:   46 DMVGASAPLGFFDPMGFSKGPAERLNA-YREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            DMVGA  PLGFFDP+GFSK  +    A +REAELKHGR AMLA  G +T + +HPLY+G LSSNP+ AI +VP  GL Q
Sbjct:   19 DMVGACKPLGFFDPLGFSKDASPASMAKFREAELKHGRVAMLACAGMITADKFHPLYDGKLSSNPLLAIAQVPKLGLLQ 97

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: A0A7S4B2U4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2U4_CHRCT)

HSP 1 Score: 96.3 bits (238), Expect = 3.980e-20
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 0

Query:   47 MVGASAPLGFFDPMGFSK--GPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            +VG SAPLGFFDP+G++K   PA+ L  YRE ELKHGR AMLA +G +  + WHPLY GG S+NP+ AIT+VP  GL Q
Sbjct:   55 LVGDSAPLGFFDPLGYTKKASPAD-LKKYRECELKHGRVAMLASMGMVVADFWHPLYGGGNSANPLVAITQVPKAGLLQ 132

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: Q2IA68_ISOGA (Chloroplast light harvesting protein isoform 11 n=1 Tax=Isochrysis galbana TaxID=37099 RepID=Q2IA68_ISOGA)

HSP 1 Score: 94.7 bits (234), Expect = 1.160e-19
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0

Query:   47 MVGASAPLGFFDPMGFSK--GPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            MVG SAPLGFFDP GFSK   PA  +  +REAELKHGR AMLA  G +T + +HPLY+G LSSNP+ AI++VP  GL Q
Sbjct:   38 MVGDSAPLGFFDPFGFSKEASPAS-MAKFREAELKHGRVAMLASAGMITADKFHPLYDGKLSSNPLLAISQVPKLGLLQ 115

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: A0A0G4GBS7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GBS7_VITBC)

HSP 1 Score: 95.5 bits (236), Expect = 4.050e-19
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 0

Query:   47 MVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            ++G+SAPLGFFDP+GF+K  + + +   RE ELKHGR AM AV+G++TQ  +HPLY G LS++P+KAITEVP  G+ Q
Sbjct:   99 LIGSSAPLGFFDPLGFTKNKSTQEIARLRECELKHGRLAMFAVLGWMTQTVFHPLYGGKLSADPLKAITEVPAPGIIQ 176

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BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Match: A0A7S3TFW5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TFW5_EMIHU)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-18
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 0

Query:   47 MVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123
            MVG   PLG+FDP+GFSK  + E +  +REAELKHGR AMLA  G +T + +HPL+ G LSSNP+ AIT+VP  GL Q
Sbjct:   49 MVGDCKPLGYFDPLGFSKDASPETMAKFREAELKHGRVAMLACAGMITADKFHPLFGGKLSSNPLLAITQVPKLGLLQ 126

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig1019.312.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8V9_ECTSI	1.030e-125	67.41	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A7S0XDX8_9STRA	1.300e-23	67.09	Hypothetical protein n=2 Tax=Chromulina nebulosa T...	[more]
I2CPJ1_NANGC	5.360e-23	50.83	Protein fucoxanthin chlorophyll a c protein n=1 Ta...	[more]
A0A7S0E1K9_9EUKA	5.350e-21	52.53	Hypothetical protein n=1 Tax=Phaeocystis antarctic...	[more]
A0A7S3AG67_9EUKA	5.610e-21	55.05	Hypothetical protein n=1 Tax=Haptolina ericina Tax...	[more]
A0A7S3IA89_9SPIT	2.040e-20	62.03	Hypothetical protein (Fragment) n=1 Tax=Favella eh...	[more]
A0A7S4B2U4_CHRCT	3.980e-20	60.76	Hypothetical protein n=1 Tax=Chrysotila carterae T...	[more]
Q2IA68_ISOGA	1.160e-19	63.29	Chloroplast light harvesting protein isoform 11 n=...	[more]
A0A0G4GBS7_VITBC	4.050e-19	57.69	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
A0A7S3TFW5_EMIHU	1.120e-18	58.97	Hypothetical protein n=1 Tax=Emiliania huxleyi Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 184..307 e-value: 7.2E-9 score: 37.9
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 36..131 e-value: 7.4E-15 score: 57.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 47..110 e-value: 3.6E-16 score: 60.1 coord: 219..291 e-value: 5.7E-10 score: 40.0
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 4..118
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 217..299
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 4..118
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 217..299
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..133
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 134..158
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 183..207
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..32
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 213..236
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 208..212
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 159..182
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 237..313
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..32
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..16 score: 0.649
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 36..130
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 211..295
None	No IPR available	TMHMM	TMhelix		coord: 183..205
None	No IPR available	TMHMM	TMhelix		coord: 210..232
None	No IPR available	TMHMM	TMhelix		coord: 136..158
None	No IPR available	TMHMM	TMhelix		coord: 4..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig1019	contig	Ecto-sp8_S_contig1019:9470..15006 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig1019.312.1	mRNA_Ecto-sp8_S_contig1019.312.1	Ectocarpus species8 EcLAC_412	mRNA	Ecto-sp8_S_contig1019 9470..15006 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp8_S_contig1019.312.1 ID=prot_Ecto-sp8_S_contig1019.312.1|Name=mRNA_Ecto-sp8_S_contig1019.312.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=314bp
MKSVIAFSAVLASASAFVPSASFVGSPVSSVARPASSTAVSMAASDMVGA
SAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPL
YNGGLSSNPVKAITEVPPEGLFQASYRCCCCCRFFWLCRLVVFIAVCVSS
LALVPWVFPFSRQRLSVMAIVLLHTLRFRPPDVVLVFLLVAFTALTDAIL
CAASYGTHTLLTVVIWGHVFVYVQIVMFIGFLEYVISQIVAKPGYIPGDY
VGANDLFSEEGPHSQWETYQLKELHNGRAAMMGITGLVTHNFLTGGMPAF
EQISRGVYSGGIH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln