prot_Ecto-sp8_S_contig10155.253.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10155.253.1
Unique Nameprot_Ecto-sp8_S_contig10155.253.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length100
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A1E7ERC4_9STRA (TPR-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ERC4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.990e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAGNF 52
            SQLLLGA L   +MG+ + AR +F RSV AD  HAHAWQAWG+MET+AG+F
Sbjct:  494 SQLLLGAALCEMRMGKDEGARGFFERSVVADNKHAHAWQAWGVMETKAGHF 544
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A7S3LJ22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ22_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.370e-10
Identity = 32/49 (65.31%), Postives = 34/49 (69.39%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAG 50
            SQLLLGA L  AK+G    AR  F RSV AD  HA AWQAWG+ME RAG
Sbjct:  341 SQLLLGAALCEAKLGNEAKARSLFERSVVADERHAQAWQAWGVMEMRAG 389
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A7S1GMC4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMC4_CYCTE)

HSP 1 Score: 63.9 bits (154), Expect = 9.540e-10
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLME 46
            SQLLLGA L+  ++G  D+AR++F RSV+A+  HA AWQAWG+ME
Sbjct:  177 SQLLLGAALSKVRLGSEDSARDFFERSVKANKEHAQAWQAWGVME 221
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A0M0JHX7_9EUKA (mRNA maturation factor chloroplast n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHX7_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-9
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLME 46
            S LLLG  +   +MG  D  R +F R+V+ADPSHAHAWQAWG+ME
Sbjct:  408 SLLLLGVAIVHGQMGAFDEGRSFFLRAVQADPSHAHAWQAWGVME 452
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A835Z4V8_9STRA (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.860e-9
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETR 48
            S LLLGA LA  ++G    ARE+FRR+V AD  HAHAWQAWG++E R
Sbjct:  566 SPLLLGAALAEVRLGCLAEAREFFRRAVVADRGHAHAWQAWGVLEAR 612
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: R7Q4Y4_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Y4_CHOCR)

HSP 1 Score: 61.2 bits (147), Expect = 8.820e-9
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAK-----MGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAG 50
            S++L+GA LA A      + + ++AR++F+R+V ADP+HAHAWQAWG+ E R+G
Sbjct:  577 SRVLVGAALAEAASCPQYIADKNSARDFFKRAVAADPTHAHAWQAWGVFELRSG 630
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A7S2K0W9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0W9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.570e-8
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLM 45
            SQLLLGA LA  ++G  D AR  F  SV AD  HAHAWQAWG+M
Sbjct:  200 SQLLLGAALAEVRLGNEDAARLLFESSVNADRKHAHAWQAWGVM 243
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A7J7IG27_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IG27_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 1.660e-8
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMGEPD---NAREYFRRSVEADPSHAHAWQAWGLMETRAGN 51
            S+LL+GA L+ A +G  D    AR  FR++V ADP H HAWQ WG+ ETR GN
Sbjct:  737 SRLLVGAALSEAALGTRDAIERARVLFRQAVVADPLHGHAWQCWGVFETRQGN 789
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A448Z6G4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6G4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.910e-8
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLME 46
            SQLLLGA L+  ++G+ + AR+ F RSV AD  HA AWQAWG+ME
Sbjct:  756 SQLLLGAALSEMRLGKFEAARDLFGRSVLADEKHAQAWQAWGIME 800
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A2V3J326_9FLOR (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J326_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 1.080e-7
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 0 
Query:    2 SQLLLGAGLAIAKMG-----EPDNAREYFRRSVEADPSHAHAWQAWGLMETRAGN 51
            S++L+GA LA A  G     E D A   F R+V ADP+HAHAWQAWG+ E R G+
Sbjct:  768 SRVLVGAALAHAASGSRTRAEEDEAVALFERAVGADPTHAHAWQAWGVFELRRGH 822
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A1E7ERC4_9STRA2.990e-1364.71TPR-like protein n=1 Tax=Fragilariopsis cylindrus ... [more]
A0A7S3LJ22_9STRA1.370e-1065.31Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S1GMC4_CYCTE9.540e-1060.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A0M0JHX7_9EUKA1.830e-960.00mRNA maturation factor chloroplast n=1 Tax=Chrysoc... [more]
A0A835Z4V8_9STRA1.860e-961.70PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
R7Q4Y4_CHOCR8.820e-950.00TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S2K0W9_9STRA1.570e-863.64Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7J7IG27_9RHOD1.660e-854.72Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A448Z6G4_9STRA7.910e-860.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A2V3J326_9FLOR1.080e-752.73PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 50..82
e-value: 1.7E-6
score: 37.6
coord: 16..48
e-value: 0.079
score: 22.1
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 36..69
e-value: 42.0
score: 9.5
coord: 2..35
e-value: 0.2
score: 20.7
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 9..35
e-value: 0.0029
score: 17.7
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 2..35
score: 10.296
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 36..69
score: 8.142
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 5..100
e-value: 3.5E-23
score: 84.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 14..100
NoneNo IPR availablePFAMPF13432TPR_16coord: 48..97
e-value: 0.0051
score: 17.4
NoneNo IPR availablePANTHERPTHR44917FAMILY NOT NAMEDcoord: 13..96
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 2..100
score: 18.895

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10155contigEcto-sp8_S_contig10155:5093..6175 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10155.253.1mRNA_Ecto-sp8_S_contig10155.253.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10155 5093..6175 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10155.253.1 ID=prot_Ecto-sp8_S_contig10155.253.1|Name=mRNA_Ecto-sp8_S_contig10155.253.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
GSQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAG
NFKVARSLWERGLKANPTHGPLWQAYAVMEEKVGEPERARKLFEAGLERC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom