mRNA_Ecto-sp8_S_contig10155.253.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10155.253.1
Unique NamemRNA_Ecto-sp8_S_contig10155.253.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A1E7ERC4_9STRA (TPR-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ERC4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.990e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAGNF 156
            SQLLLGA L   +MG+ + AR +F RSV AD  HAHAWQAWG+MET+AG+F
Sbjct:  494 SQLLLGAALCEMRMGKDEGARGFFERSVVADNKHAHAWQAWGVMETKAGHF 544
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A7S3LJ22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ22_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.370e-10
Identity = 32/49 (65.31%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAG 150
            SQLLLGA L  AK+G    AR  F RSV AD  HA AWQAWG+ME RAG
Sbjct:  341 SQLLLGAALCEAKLGNEAKARSLFERSVVADERHAQAWQAWGVMEMRAG 389
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A0M0JHX7_9EUKA (mRNA maturation factor chloroplast n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHX7_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-9
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLME 138
            S LLLG  +   +MG  D  R +F R+V+ADPSHAHAWQAWG+ME
Sbjct:  408 SLLLLGVAIVHGQMGAFDEGRSFFLRAVQADPSHAHAWQAWGVME 452
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A835Z4V8_9STRA (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.860e-9
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETR 144
            S LLLGA LA  ++G    ARE+FRR+V AD  HAHAWQAWG++E R
Sbjct:  566 SPLLLGAALAEVRLGCLAEAREFFRRAVVADRGHAHAWQAWGVLEAR 612
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: R7Q4Y4_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Y4_CHOCR)

HSP 1 Score: 61.2 bits (147), Expect = 8.820e-9
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAK-----MGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAG 150
            S++L+GA LA A      + + ++AR++F+R+V ADP+HAHAWQAWG+ E R+G
Sbjct:  577 SRVLVGAALAEAASCPQYIADKNSARDFFKRAVAADPTHAHAWQAWGVFELRSG 630
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A7J7IG27_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IG27_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 1.660e-8
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAKMGEPD---NAREYFRRSVEADPSHAHAWQAWGLMETRAGN 153
            S+LL+GA L+ A +G  D    AR  FR++V ADP H HAWQ WG+ ETR GN
Sbjct:  737 SRLLVGAALSEAALGTRDAIERARVLFRQAVVADPLHGHAWQCWGVFETRQGN 789
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A2V3J326_9FLOR (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J326_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 1.080e-7
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAKMG-----EPDNAREYFRRSVEADPSHAHAWQAWGLMETRAGN 153
            S++L+GA LA A  G     E D A   F R+V ADP+HAHAWQAWG+ E R G+
Sbjct:  768 SRVLVGAALAHAASGSRTRAEEDEAVALFERAVGADPTHAHAWQAWGVFELRRGH 822
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A7S0GAB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAB1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.060e-7
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   28 LAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETR 144
            L   ++G  D+AR +F+RSV+AD  HAHAWQAWG+ME +
Sbjct:    3 LCDVRLGNEDSARRFFKRSVQADRRHAHAWQAWGMMEMK 41
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: A0A8J5XE38_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XE38_DIALT)

HSP 1 Score: 53.9 bits (128), Expect = 3.310e-6
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLME 138
            S LLLG    +   G+   ARE  R++V AD  HAHAWQAWG+ME
Sbjct:  620 SPLLLGRARVLRARGDIGGAREVLRQAVAADAGHAHAWQAWGVME 664
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BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Match: M1VCY3_CYAM1 (Similar to psbB mRNA maturation factor Mbb1 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VCY3_CYAM1)

HSP 1 Score: 53.5 bits (127), Expect = 4.540e-6
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    4 SQLLLGAGLAIAKMG---EPDNAREYFRRSVEADPSHAHAWQAWGLMETRAGN 153
            S+LLLGA L+ A      + +  R+ FRR+++ D  H HAWQ WG+ E+R GN
Sbjct:  752 SRLLLGAALSYAAEATALDAERPRQLFRRALQEDSFHGHAWQCWGVFESRLGN 804
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10155.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A1E7ERC4_9STRA2.990e-1364.71TPR-like protein n=1 Tax=Fragilariopsis cylindrus ... [more]
A0A7S3LJ22_9STRA1.370e-1065.31Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A0M0JHX7_9EUKA1.830e-960.00mRNA maturation factor chloroplast n=1 Tax=Chrysoc... [more]
A0A835Z4V8_9STRA1.860e-961.70PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
R7Q4Y4_CHOCR8.820e-950.00TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A7J7IG27_9RHOD1.660e-854.72Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A2V3J326_9FLOR1.080e-752.73PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
A0A7S0GAB1_9STRA2.060e-756.41Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A8J5XE38_DIALT3.310e-653.33Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
M1VCY3_CYAM14.540e-645.28Similar to psbB mRNA maturation factor Mbb1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10155contigEcto-sp8_S_contig10155:5093..6175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons3
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.1261902-CDS-Ecto-sp8_S_contig10155:5092..51701681143113.1261902-CDS-Ecto-sp8_S_contig10155:5092..5170Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10155 5093..5170 -
1681143113.1365707-CDS-Ecto-sp8_S_contig10155:5466..55981681143113.1365707-CDS-Ecto-sp8_S_contig10155:5466..5598Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10155 5467..5598 -
1681143113.1461112-CDS-Ecto-sp8_S_contig10155:6085..61751681143113.1461112-CDS-Ecto-sp8_S_contig10155:6085..6175Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10155 6086..6175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10155.253.1prot_Ecto-sp8_S_contig10155.253.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10155 5093..6175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10155.253.1

>prot_Ecto-sp8_S_contig10155.253.1 ID=prot_Ecto-sp8_S_contig10155.253.1|Name=mRNA_Ecto-sp8_S_contig10155.253.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
GSQLLLGAGLAIAKMGEPDNAREYFRRSVEADPSHAHAWQAWGLMETRAG
NFKVARSLWERGLKANPTHGPLWQAYAVMEEKVGEPERARKLFEAGLERC
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mRNA from alignment at Ecto-sp8_S_contig10155:5093..6175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10155.253.1 ID=mRNA_Ecto-sp8_S_contig10155.253.1|Name=mRNA_Ecto-sp8_S_contig10155.253.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1083bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10155:5093..6175- (Ectocarpus species8 EcLAC_412)
GGATCTCAGTTACTGCTCGGAGCTGGCCTGGCCATTGCGAAAATGGGCGA
GCCCGACAACGCTCGCGAGTACTTCAGGAGATCAGTAGAGGTGAACGAAG
GCCTTGTCGCTGGCGTCGTGGGTGACATTGTTTGTTGCGGTTGGGTGCTG
CTGTTGGATGCTGTCGCTGCTCCCTTTCCCACCGCCGTGCGTGCTTCTGA
ACGTCATTGGTCTACAGATACGTCCCACCACGCGTCTGGTAGTTAATGTG
CACGATTTGGTGTATTATGGCAGCATCGGCGGCGCTGACCGGCTGGCCGC
TAGAAAGTCTCAGTGCGACTCCTTGCCGGAAAACGCTTGTGAAGGACATG
TTCTAGAGCCTCGTGAAGGGTGTTTCGGGTTTCGTCGGAAGTGCCCGGGC
CTTATTTTACCCTTCCCGGATTTCTGTAGTTTCTTGTTTGTCCTACCCTG
TGTGGCGCAGCTCGCACACTTGGACCGTCTTTTTTACCCCTCCCTGACGC
GTGTAATTTATCATTTGTCCTACACCCTGTGTGGCGCCACTGCTGTCTCT
GATGCTCCCTCACGCTTGTCGACGAAGGCGGATCCTAGTCATGCGCACGC
GTGGCAGGCGTGGGGGCTGATGGAGACTCGCGCCGGCAACTTCAAGGTGG
CGCGGTCTCTGTGGGAGAGGGGGCTCAAGGCTAACCCCACGCACGGCCCC
CTTTGGCAGGTGGGTTGGTGACGGCGCGTGGTGAACCAGTTGTTCTGGCT
GTTGTTGTTTTCATGTCCTCTTATTTTGAGGCGACGAAACGTGTACATAG
AGCGATGGTAAGTTGTCGCGAACCCATACCAAACACGAAATACTCGTGTC
AATACGCAAGGTGGGTAACGTCACCAAAATATTACCAAAATGTTGCGTCT
CACGTCCAAAAAAGTATGGCAACCTTGCCATAACCGAGGAGACAACACTC
TGCGGTACTCACGACTCATGACCGCGAACGGTACGTCATTTATACATCCC
GTCAGGCGTACGCCGTAATGGAGGAGAAGGTGGGAGAGCCTGAGCGGGCT
CGCAAGCTTTTCGAGGCGGGACTGGAGCGCTGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10155:5093..6175-

>mRNA_Ecto-sp8_S_contig10155.253.1 ID=mRNA_Ecto-sp8_S_contig10155.253.1|Name=mRNA_Ecto-sp8_S_contig10155.253.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10155:5093..6175- (Ectocarpus species8 EcLAC_412)
GGATCTCAGTTACTGCTCGGAGCTGGCCTGGCCATTGCGAAAATGGGCGA
GCCCGACAACGCTCGCGAGTACTTCAGGAGATCAGTAGAGGCGGATCCTA
GTCATGCGCACGCGTGGCAGGCGTGGGGGCTGATGGAGACTCGCGCCGGC
AACTTCAAGGTGGCGCGGTCTCTGTGGGAGAGGGGGCTCAAGGCTAACCC
CACGCACGGCCCCCTTTGGCAGGCGTACGCCGTAATGGAGGAGAAGGTGG
GAGAGCCTGAGCGGGCTCGCAAGCTTTTCGAGGCGGGACTGGAGCGCTGT
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