prot_Ecto-sp8_S_contig101547.252.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig101547.252.1
Unique Nameprot_Ecto-sp8_S_contig101547.252.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length54
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101547.252.1 vs. uniprot
Match: A0A6H5JZS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 9.240e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 
Query:    1 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH 54
            LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH
Sbjct:   13 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH 66
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BLAST of mRNA_Ecto-sp8_S_contig101547.252.1 vs. uniprot
Match: D7G2L7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L7_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.490e-27
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 
Query:    1 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH 54
            LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH
Sbjct:   13 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH 66
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BLAST of mRNA_Ecto-sp8_S_contig101547.252.1 vs. uniprot
Match: F0YFW1_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFW1_AURAN)

HSP 1 Score: 48.1 bits (113), Expect = 5.920e-5
Identity = 18/53 (33.96%), Postives = 36/53 (67.92%), Query Frame = 0 
Query:    1 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDG 53
            + L H++LG+      ++++ ++P +  LN+RDNR+TDVG+  ++ A+C  +G
Sbjct:  322 IDLSHRALGDGLACAFAKIIPNIPRLITLNMRDNRMTDVGIAAVLHAVCTHNG 374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101547.252.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZS7_9PHAE9.240e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2L7_ECTSI3.490e-27100.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
F0YFW1_AURAN5.920e-533.96EF-hand domain-containing protein n=1 Tax=Aureococ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..53
e-value: 2.2E-7
score: 31.9
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101547contigEcto-sp8_S_contig101547:322..483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101547.252.1mRNA_Ecto-sp8_S_contig101547.252.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig101547 322..483 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig101547.252.1 ID=prot_Ecto-sp8_S_contig101547.252.1|Name=mRNA_Ecto-sp8_S_contig101547.252.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICG
MDGH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf