mRNA_Ecto-sp8_S_contig101547.252.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101547.252.1
Unique NamemRNA_Ecto-sp8_S_contig101547.252.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101547.252.1 vs. uniprot
Match: A0A6H5JZS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 9.240e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH 162
            LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH
Sbjct:   13 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH 66
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BLAST of mRNA_Ecto-sp8_S_contig101547.252.1 vs. uniprot
Match: D7G2L7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L7_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.490e-27
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH 162
            LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH
Sbjct:   13 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDGH 66
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BLAST of mRNA_Ecto-sp8_S_contig101547.252.1 vs. uniprot
Match: F0YFW1_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFW1_AURAN)

HSP 1 Score: 48.1 bits (113), Expect = 5.920e-5
Identity = 18/53 (33.96%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICGMDG 159
            + L H++LG+      ++++ ++P +  LN+RDNR+TDVG+  ++ A+C  +G
Sbjct:  322 IDLSHRALGDGLACAFAKIIPNIPRLITLNMRDNRMTDVGIAAVLHAVCTHNG 374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101547.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZS7_9PHAE9.240e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2L7_ECTSI3.490e-27100.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
F0YFW1_AURAN5.920e-533.96EF-hand domain-containing protein n=1 Tax=Aureococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101547contigEcto-sp8_S_contig101547:322..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score111.3
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D7G2L7
Model size162
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size162
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.0831075-CDS-Ecto-sp8_S_contig101547:321..4831681143113.0831075-CDS-Ecto-sp8_S_contig101547:321..483Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101547 322..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101547.252.1prot_Ecto-sp8_S_contig101547.252.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101547 322..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101547.252.1

>prot_Ecto-sp8_S_contig101547.252.1 ID=prot_Ecto-sp8_S_contig101547.252.1|Name=mRNA_Ecto-sp8_S_contig101547.252.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
LSLPHQSLGNTYIELISEVVKDLPGVTRLNLRDNRLTDVGVQEIVEAICG
MDGH
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mRNA from alignment at Ecto-sp8_S_contig101547:322..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101547.252.1 ID=mRNA_Ecto-sp8_S_contig101547.252.1|Name=mRNA_Ecto-sp8_S_contig101547.252.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101547:322..483+ (Ectocarpus species8 EcLAC_412)
CTGTCCCTGCCGCATCAGTCCCTCGGCAATACCTACATCGAGCTCATCTC
GGAGGTGGTCAAGGACCTTCCGGGGGTGACACGCCTTAACCTCCGGGACA
ACCGCCTCACGGACGTCGGCGTGCAGGAGATCGTGGAGGCGATATGCGGC
ATGGATGGACAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101547:322..483+

>mRNA_Ecto-sp8_S_contig101547.252.1 ID=mRNA_Ecto-sp8_S_contig101547.252.1|Name=mRNA_Ecto-sp8_S_contig101547.252.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101547:322..483+ (Ectocarpus species8 EcLAC_412)
CTGTCCCTGCCGCATCAGTCCCTCGGCAATACCTACATCGAGCTCATCTC
GGAGGTGGTCAAGGACCTTCCGGGGGTGACACGCCTTAACCTCCGGGACA
ACCGCCTCACGGACGTCGGCGTGCAGGAGATCGTGGAGGCGATATGCGGC
ATGGATGGACAC
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