mRNA_Ecto-sp8_S_contig9976.31855.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9976.31855.1
Unique NamemRNA_Ecto-sp8_S_contig9976.31855.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: D8LR41_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR41_ECTSI)

HSP 1 Score: 548 bits (1411), Expect = 4.630e-193
Identity = 284/298 (95.30%), Postives = 288/298 (96.64%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFSGGMSTKTTEQS----TLGAFMLWVGWYGFNGCSTLYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGADAQHGYRRVELPDIVRKVLSQVEGLVAKAADERDPPSVVSSNSGRKSKRKRPET 882
            VHTTGGVASLVMMILIGPRLGRFSGGMS +TTE+S    TLGAF+LWVGWYGFNGCS LYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWG+IAAGLF SQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFM GFSLKYVGLLRISE SERFGADAQHGYRRVELPDIVRKVLSQVEGLVAKAADERDPPS VSSNSGRKSKRKRPET
Sbjct:  206 VHTTGGVASLVMMILIGPRLGRFSGGMSIQTTEESVIIQTLGAFLLWVGWYGFNGCSALYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGVIAAGLFASQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMAGFSLKYVGLLRISEESERFGADAQHGYRRVELPDIVRKVLSQVEGLVAKAADERDPPSFVSSNSGRKSKRKRPET 503          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: A0A6H5L0R3_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R3_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 4.840e-118
Identity = 184/275 (66.91%), Postives = 219/275 (79.64%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFS-GGMSTKTTEQS----TLGAFMLWVGWYGFNGCSTLYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGAD-AQHGYRRVELPDIVRKVLSQVEGLVAKA 807
            VH TGG+A+LVM++LIGPRLGRFS GG   K   QS    TLGAF+LWVGWYGFNGCSTLYITG+SHVAAKAMVCT+I A SA LGV  ASL+LFQHV P  V+NG+LSGLVAI+A CAVVEVEGAF IG ++A+ YLGCSR +++VRIDDMVDA+PVHLANGVWG+IAAGLF SQEGYSASYY++R   CCG LYGCG  Q++AN+ FVLS+L WVGL T      +KY+G+LRIS V ER G D A HG    ++P+  + +LS++E L AKA
Sbjct:  217 VHATGGMAALVMVVLIGPRLGRFSDGGAKNKMERQSVIIETLGAFILWVGWYGFNGCSTLYITGNSHVAAKAMVCTSIAAASAALGVACASLILFQHVGPGQVINGLLSGLVAITAGCAVVEVEGAFLIGTIAALNYLGCSRLLELVRIDDMVDASPVHLANGVWGVIAAGLFASQEGYSASYYSERGSMCCGLLYGCGPRQLMANMVFVLSVLVWVGLTTLAISHGVKYMGILRISNVVERMGTDSAAHGGS--DMPEFAKNLLSRIEALAAKA 489          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: D8LR44_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR44_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 2.560e-108
Identity = 168/236 (71.19%), Postives = 193/236 (81.78%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFS-GGMSTKTTEQST----LGAFMLWVGWYGFNGCSTLYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRI 693
            VHTTGG+A+LVM++L+GPRLGRFS GG   K   QS     LGAF+LWVGWYGFNGCSTLYITGSSHVAAKAMVCT+I A SA LGV   SL+LFQHV P  V+NG+LSGLVAISA CAVVEVEGAF IG ++A+ YLGCSR +++VRIDDMVDA+PVHLANGVWGMIAAGLF S+EGYSASYY++R   CCG LYGCG  Q++AN  FVLSIL WVGL T      +KY+G+LRI
Sbjct:  203 VHTTGGMAALVMVVLVGPRLGRFSDGGAKNKMERQSVIIEALGAFILWVGWYGFNGCSTLYITGSSHVAAKAMVCTSIAAASASLGVACTSLILFQHVGPGQVINGLLSGLVAISAGCAVVEVEGAFLIGTIAALNYLGCSRLLELVRIDDMVDASPVHLANGVWGMIAAGLFASKEGYSASYYSERGRMCCGLLYGCGPRQLMANTVFVLSILVWVGLTTLAISRGVKYMGILRI 438          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: A0A7S1UFZ4_9STRA (Ammonium transporter n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFZ4_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.570e-59
Identity = 117/251 (46.61%), Postives = 159/251 (63.35%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFS-GGMSTKTTEQS----TLGAFMLWVGWYGFNGCSTLYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGADA-QHG 735
            VH TGGVA+L   I  GPR GRF   G      EQ+     LG F+LWVGWYGFNG STLYIT  S VAAK MV +TI A +AG         +   V+    +NG+L GLV+I+ +CAV+E  GAF IGL+  V+Y   +  ++ ++IDD V+AAPVH+  G+WG+IAAGLF +++ YS +YY+DR+E C G  YG   + + AN+ F++ I+ WVG  T +   SLK  GLLR+++  +  G D  +HG
Sbjct:  210 VHMTGGVAALSGAIWAGPRNGRFGPNGEVNSLPEQNPIFAALGTFILWVGWYGFNGASTLYITHYSGVAAKVMVVSTIGAAAAGFSSVIFHKFMHNTVDLGAALNGVLGGLVSITGACAVIEPYGAFIIGLIGGVVYQLSAMLLESLKIDDCVNAAPVHMFCGMWGVIAAGLFATEQNYSNAYYSDRAEDCAGIFYGGNGSTLGANICFMICIILWVGATTSVMFGSLKAAGLLRLTDEQQATGMDILEHG 460          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: A0A835ZI90_9STRA (Ammonium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI90_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.470e-58
Identity = 110/251 (43.82%), Postives = 149/251 (59.36%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFSGGMSTKTTEQ-----STLGAFMLWVGWYGFNGCSTLYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGADA-QHG 735
            VH TGGVA+LV  +++GPR GRF      +   Q       +G   LW GWYGFNG STL ITG   VAAK M+ +T+     GL  T  +L++  +++P    NGILSG VAI+    VV+ EGA  IG ++ +IY G S  +  +RIDD+V+AAPVHL  G+WGM A GL   +  Y  +YY DR++ CCG  YGCG  Q+ A + F+L  L W G+ + +     KY   LR+S+  E  G D+ +HG
Sbjct:  213 VHMTGGVAALVGAVMVGPRAGRFGPSGEVRALPQLSWVYQAIGTLFLWFGWYGFNGVSTLLITGKGLVAAKVMINSTLSGAIGGLSSTLVALLMNGYIDPAAANNGILSGFVAITGPSGVVQPEGALLIGFIAGLIYQGASNLLLKLRIDDVVNAAPVHLFCGMWGMFAVGLLAEEHNYGRAYYEDRADICCGAFYGCGGNQLAAQIVFILVNLAWTGVTSAIMFTVAKYTVGLRVSKEVEEMGMDSSKHG 463          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: D7G3S7_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3S7_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 1.130e-57
Identity = 117/253 (46.25%), Postives = 158/253 (62.45%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFSGGMSTKTTEQS----TLGAFMLWVGWYGFNGCSTLYITGSSHVAAKAMVCTTICATSAGLG-VTSASLVLFQ--HVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGAD-AQHG 735
            VH TGG A+LV  +L+GPR GRF  G+  +  + S    TLG   LW+GWYGFNG STL I G   VAA+AMV TTI   + G+  VTS ++  F+  +V+     NG+L GLVAI+A C+VV  EGA  IG V+  +Y   S  +  ++IDD+VDA+PVH+  G+WG++AAGL   ++ Y  SYY++R   CCG  YGCG  Q  ANL FV+ +L W G  +F+     KY   LR+S+  E  G D ++HG
Sbjct:  201 VHMTGGTAALVGAVLLGPRSGRFIDGIPVELPQLSFVYQTLGTLCLWMGWYGFNGVSTLAIVGLGEVAARAMVNTTI---AGGVACVTSVTVAYFRIGYVDITAANNGVLGGLVAITAGCSVVMPEGAVVIGFVAGFVYNASSVLLLKLQIDDVVDASPVHMFCGMWGVLAAGLLAEKDNYGESYYSERQGDCCGAFYGCGGNQFTANLIFVIVVLGWAGFCSFLMFTFAKYTVGLRVSKAIEDAGMDDSKHG 450          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: A0A6V1QTK2_HETAK (Ammonium transporter n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QTK2_HETAK)

HSP 1 Score: 198 bits (504), Expect = 1.060e-56
Identity = 117/255 (45.88%), Postives = 159/255 (62.35%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFSGGMSTKTTEQS----TLGAFMLWVGWYGFNGCSTLYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQH---VEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWV---GLMTFMTGFSLKYVGLLRISEVSERFGADAQHG 735
            VHTTGGV +L    ++GPR GRF  G   +  E S    TLG  +LW GWYGFNG STLYI G S  AA+AMV +TI   SAG G  S+ L+   H   ++P    NGIL GLV+I+ASC+VV+ EGAF IGL+  VIY   +  +  ++IDD+V+A+PVH+  GVWG++A+GLF S+  Y A+YY+ R  +C G  YG   +Q  ANL+F+L++L W    G + F     + ++GL    EV E     ++HG
Sbjct:  203 VHTTGGVVALWGAKILGPRTGRFINGQKQEFKEVSPIYQTLGTLILWFGWYGFNGASTLYIGGYSAPAARAMVTSTI---SAGAGCISSVLLAKLHTGIIDPGAANNGILGGLVSITASCSVVDPEGAFVIGLIGGVIYYFSALLLLRLQIDDVVNASPVHMFCGVWGVLASGLFASEAPYGAAYYSARQSKCAGAFYGGDGSQFAANLAFILAVLAWSTTWGCIIFFACDKIPFIGLRVDLEVEEMGMDSSKHG 454          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: A0A835ZB85_9STRA (Ammonium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB85_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.450e-56
Identity = 110/251 (43.82%), Postives = 145/251 (57.77%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFSGGMSTKTTEQ-----STLGAFMLWVGWYGFNGCSTLYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGAD-AQHG 735
            VH TGGVA+LV  +++GPR GRF      +   Q       +G   LW GWYGFNG S+LYI G   VAAK M+ +T+     GL  T  + VL   ++P    NGILSG VAI+A   V + EGA  IG ++ +IY   S+ +  +RIDD+V+AAPVHL  G+WGM A GL      Y   YY DRS  CCG  YGCG +Q+ A + F+L  L W G+ + +     KY   LR+S+  E  G D ++HG
Sbjct:  208 VHMTGGVAALVGAVMVGPRFGRFGPNGEVRALPQLSWVYQAIGTLFLWFGWYGFNGVSSLYIVGKGLVAAKTMINSTLSGAIGGLSSTLVAQVLDGFIDPAAANNGILSGFVAITAGSGVAQPEGAILIGFIAGIIYQATSKLLLKLRIDDVVNAAPVHLFCGMWGMFAVGLLAEPNNYGRVYYEDRSGICCGAFYGCGGSQLGAQIVFILVNLAWTGVTSALMFTVAKYTVGLRVSKEIEELGMDTSKHG 458          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: A0A6H5JVJ2_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ2_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 5.340e-53
Identity = 119/288 (41.32%), Postives = 174/288 (60.42%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFSGGMSTKTTEQS----TLGAFMLWVGWYGFNGCSTLYITGS-SHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYA---DRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGADAQ----------------HGYRRVELPDIVRKVLSQVEG 792
            VH  GG+A+LV  I + PR  RF  G + +  +QS    TLG  +LWVGWY FN  ST+ I+G  S VAA+A+V TTI  ++  L +  A  +L +  + + V NGILSGLVA+++   +V+ EGAF +G+VSA +Y   +  +  ++IDD+VDAAPVH+  G+WGMI  GLFT++EG++ +Y A   DR+++CCG  YGCG   + ANL+ + +IL WVGL + +  F+++    LR+ E  E  G D                  +G R   L D V + L+QV+G
Sbjct:  208 VHMVGGIAALVAAIAVKPRKSRFRHGHACRLPQQSPALQTLGTLILWVGWYAFNAGSTITISGGRSVVAARAVVSTTIGPSAGVLVMVIAVKMLEKKFDTRGVNNGILSGLVAVTSGAPLVDPEGAFVMGVVSAFLYYASANLLLKLKIDDVVDAAPVHMFCGMWGMIGTGLFTTREGWALTYGAAGGDRADECCGVFYGCGFNLLFANLALLCAILAWVGLTSVILFFTIEATVGLRVPEDQELLGMDLTRHNSTSGSFNAGGQGGNGGRNGSL-DAVHRALAQVDG 494          
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Match: D8LEG5_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG5_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 8.510e-52
Identity = 112/250 (44.80%), Postives = 161/250 (64.40%), Query Frame = 1
Query:    1 VHTTGGVASLVMMILIGPRLGRFSGGMSTKTTEQS----TLGAFMLWVGWYGFNGCSTLYITGS-SHVAAKAMVCTTICATSAGLGVTSASL-VLFQHVEPQDVVNGILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDAAPVHLANGVWGMIAAGLFTSQEGYSASYYA---DRSEQCCGWLYGCGTAQILANLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGAD 723
            VH  GGVA+LV  I + PR  RF  G + +  +QS    TLG  +LWVGWY FN  ST+ I+G  S VAA+A+V TTI   SAG+ V   S+ +L +  + + V NGILSGLVA+++   +V+ EGAF IG++SA  Y   +  +  ++IDD+VDAAPVH+  G+WG+I  GLFT++EG++ +Y A   DR+++CCG  YGCG   + ANL+ + +IL WVGL + +  F+++    LR+    E  G D
Sbjct:  157 VHMVGGVAALVAAIAVKPRKSRFRHGRACRLPQQSPALQTLGTLILWVGWYAFNAGSTITISGGRSVVAARAVVSTTI-GPSAGVLVMVISVKMLEKKFDTRGVNNGILSGLVAVTSGAPLVDPEGAFVIGVISAFFYYASANLLLKLKIDDVVDAAPVHMFCGIWGLIGTGLFTTREGWALTYGAAGGDRADECCGLFYGCGFNLLFANLALLCAILAWVGLTSVILFFTIEATVGLRVPADQEVLGMD 405          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9976.31855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR41_ECTSI4.630e-19395.30Ammonium transporter n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L0R3_9PHAE4.840e-11866.91Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LR44_ECTSI2.560e-10871.19Ammonium transporter n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S1UFZ4_9STRA1.570e-5946.61Ammonium transporter n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835ZI90_9STRA2.470e-5843.82Ammonium transporter n=1 Tax=Tribonema minus TaxID... [more]
D7G3S7_ECTSI1.130e-5746.25Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A6V1QTK2_HETAK1.060e-5645.88Ammonium transporter n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZB85_9STRA1.450e-5643.82Ammonium transporter n=1 Tax=Tribonema minus TaxID... [more]
A0A6H5JVJ2_9PHAE5.340e-5341.32Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LEG5_ECTSI8.510e-5244.80Ammonium transporter n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9976contigEcto-sp8_S_contig9976:41..5607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score551.6
Seed ortholog evalue2.2e-154
Seed eggNOG ortholog2880.D8LR41
Preferred nameamt-1
Model size885
KEGG koko:K03320
KEGG TC1.A.11
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG free text desc.ammonium transmembrane transporter activity
EggNOG OGsCOG0004@1,KOG0682@2759
Ec32 ortholog descriptionammonium transporter
Ec32 orthologEc-06_004450.2
Cds size885
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9976.31855.1prot_Ecto-sp8_S_contig9976.31855.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9976 41..5607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145367.295156-CDS-Ecto-sp8_S_contig9976:40..1451681145367.295156-CDS-Ecto-sp8_S_contig9976:40..145Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9976 41..145 +
1681145367.308863-CDS-Ecto-sp8_S_contig9976:679..7321681145367.308863-CDS-Ecto-sp8_S_contig9976:679..732Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9976 680..732 +
1681145367.3216903-CDS-Ecto-sp8_S_contig9976:2254..23991681145367.3216903-CDS-Ecto-sp8_S_contig9976:2254..2399Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9976 2255..2399 +
1681145367.3344686-CDS-Ecto-sp8_S_contig9976:2962..29901681145367.3344686-CDS-Ecto-sp8_S_contig9976:2962..2990Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9976 2963..2990 +
1681145367.3462245-CDS-Ecto-sp8_S_contig9976:4119..42291681145367.3462245-CDS-Ecto-sp8_S_contig9976:4119..4229Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9976 4120..4229 +
1681145367.3628185-CDS-Ecto-sp8_S_contig9976:4467..45801681145367.3628185-CDS-Ecto-sp8_S_contig9976:4467..4580Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9976 4468..4580 +
1681145367.3845243-CDS-Ecto-sp8_S_contig9976:4774..49151681145367.3845243-CDS-Ecto-sp8_S_contig9976:4774..4915Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9976 4775..4915 +
1681145367.3955667-CDS-Ecto-sp8_S_contig9976:5417..56071681145367.3955667-CDS-Ecto-sp8_S_contig9976:5417..5607Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9976 5418..5607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9976.31855.1

>prot_Ecto-sp8_S_contig9976.31855.1 ID=prot_Ecto-sp8_S_contig9976.31855.1|Name=mRNA_Ecto-sp8_S_contig9976.31855.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=295bp
VHTTGGVASLVMMILIGPRLGRFSGGMSTKTTEQSTLGAFMLWVGWYGFN
GCSTLYITGSSHVAAKAMVCTTICATSAGLGVTSASLVLFQHVEPQDVVN
GILSGLVAISASCAVVEVEGAFFIGLVSAVIYLGCSRFMDIVRIDDMVDA
APVHLANGVWGMIAAGLFTSQEGYSASYYADRSEQCCGWLYGCGTAQILA
NLSFVLSILCWVGLMTFMTGFSLKYVGLLRISEVSERFGADAQHGYRRVE
LPDIVRKVLSQVEGLVAKAADERDPPSVVSSNSGRKSKRKRPET*
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mRNA from alignment at Ecto-sp8_S_contig9976:41..5607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9976.31855.1 ID=mRNA_Ecto-sp8_S_contig9976.31855.1|Name=mRNA_Ecto-sp8_S_contig9976.31855.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5567bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9976:41..5607+ (Ectocarpus species8 EcLAC_412)
GTCCACACTACCGGAGGAGTGGCCTCCCTTGTGATGATGATTCTCATAGG GCCGCGCTTGGGCCGTTTCTCTGGTGGCATGTCCACAAAAACAACGGAGC AAAGCGTCATCATTCAGGCATGCACGTAGGCTAATCTCTGTACCCCAAGG ATACAATCCGCTGTACACACACAAATCTTCGTTGCCTCTATTGGCAAAGG TATCACTGACCGAGTGAAGGCGTGGTTGTCTAGAAGACTGTGCTAGCTTC AAGTTAGCTTACAAAGTACTCTGTCCCGGAGATACTTTTGAAAAGGATAC ACAAAAAAACTGGAGACACATCATTTTACAGCTTGTTCCAGGACGAGATG ACTTCTCCAGCCAATCAATCATCGTTCGACGTTTGTTTGGCTTGTTGGGG CTGTTTGTGTGTAGAGACAGCCAGCCCCGCACGACCGAAGCCATCACACG CCACAAGCAAGCGAAGCACAGATTTTGCGTGGAGAGTTGGAAGCGATCTT GAGCTTCACCAGGTCAGGTCTTCGAACGCAGAGGAGTTGGTGACGAAGAA ATTCCTCGCGCCGCCACTTGTCTGTTCTCCGTTGTTCTCAAACAAACCGC TGCAACCGACATCAACTGCCGCCGCCGTCATGGCCGTAGACGCTGGGAGC TTTCATGCTATGGGTGGGTTGGTACGGGTTCAACGGCTGCAGGTGAGCGG GTGCCGCACCTAGGAGCAACCACCGGATGGCAGTCGGTATCATAATACGG TATAAACACCAGCGATATGCTTACCCGTGATCACCACGCACCAGGCGTGC TCCCCCTTGCCTCACCGCTATTGCCCGGCTTTGGAAATGACATTCCCTCC GCAGTCCTTTCCCGCCGCCCCTGCCGTCCCTGGGAGAAAACAGTAGAGTA TAGACGGAAATGGGGGGTCGAAGAGCTTGCAGTAGTGGATCAGAGCACAT ATGCCGAACTAGGGATCGCAAGAAACTGCTCGTGGAATGCCTACATGTCC AAGGTAGCGGAAAAGGGCAAAACAAGAGCAGGGAAGCTGCACCCCATACT CGCAAACCGGAACCTCGCATCAAATTGACGGTTTTGAAGAGCGTAATCGC ACCGCCGCTTGTACGCCGGAGAAGTACGGGAAGGAAATAAGAAGGTAGTC AAAGAGCTCGAGGCGGCGCGGATGAAAGCAGCGAAAATCATCCTAGGATG CTCCAAGCGCAGAAGTCATGCAGCCGTCAGGGCAGAACTGGGGATCTCAT CCCTACGATCGGGAAGAGACGCAAGGAAGCTGACATGGCACTATTGCATG TGCGGTATGGCAAAGGAGAGGTTACCGAGAATAGCTTGGGAGCAAGAAAG CTGATATGGCACTATTGCATGTGCGGTATGGGAAAGGAGAGGTTACCAAG AATAGCGTGGGAGGCGGAGTGGGCAAACAAGAAGAGGGGTAGACAACCCA CGGAGTGGGTCAAGGTTGTAGGTGACGTATGGAAGGGGTTCGAAATTGAT GAAGGCGATACGCTGGATACGGAGGGTCGAAAAGGGTCCAAGGAGAAGAT ATCTGTTGCTTTTGCGGAGAGAGAAGAACATAATCTAAGAAAGAAACCAG GGATAAGGAGGGCACAGAAGTGTACGGAAAGCTGAAAGAAAGAATAGGTT TCAAGGAGTACCTACATGGACCAATGGATGCAGGGACAAACTGAAGGTCA AATTCAGGACCGGGGACATTTACCGTCGAGAATGCAGACGAATATTTAGG AAGGTAAACGATGAAGACGACAAGTTCAAATGTGAACGCGGCTCCGAGTG CGAAGACCGGGTTCATGTCGTTGTGGAATGTCGGCTGTGCAAGAAGGAGA GGGAAGTGCACGTGACTGAGCTGGGAAAAGTAGGAGGAAGATACATGGAG ATGTTTGGGGCATGGAATAGCCAGGAGAAGACGGTAGCTGTACTGGGGCA TAGGAAGTGGGTTGGAAGGCGGGGATTGATATCGATAGGATAGATAGACT GGGACAGACATTTTCTATCCACCTTCGCCAAAGTAGGAAGAAAGAATTGG CCATCGGTGATCGGTCGTGGTGGGAACAATGATCCGTCCTCTCGAGGACG CGTGGTCAATGGTCTATCCGCTAAGGCATGCAAAACATGAGAGTACGCCC CCCCCCCACCTTCCCTCGACGGCTGCCCCCTCGACCCCGCACCGACGTTT GTTCGTGATGGCAGCACGCTGTACATAACTGGCAGCTCGCACGTGGCAGC CAAGGCAATGGTATGTACGACCATCTGTGCCACATCGGCCGGTCTGGGCG TCACCTCCGCAAGCTTGGTCTTGTTTCAACACGTGGAACCCCAGGATGTT GTCAACGGCGTGAGTGGGAGTCACCTAAGAATGCCTTGGGGGCAATCGAG AGTGTTACTGTACCCTGCGTCTTGTGCCTGGCAACCTTTGGTGGCGTTTT TTTGTTGCTTGTGGTGGGTAGGCCCTCGGTAACGGTCGAAATCGTCGGGA GCGAGAACAACCCCTTCCCCTACGCCAAAATAGTTGCCTGCGTCTTCATT TTCTGTAGATTTGTATTCTGAGAGACAGACTCTGTTTCTTGTGCTCGTTT TCTCGCTTATGACGGAAGTTTTTTTCTCGAGATTGGCCATTGGCACATTT GGGTTAGTCAAATAGACGCGCTTGTTTAAGTCTGCCCGAAGCAAACTTCT TCTACAGGCTAGACAACAGTTCCCGTAAGTCTGCTCCAATTGCAAAACGA AATATACATGCCGAGCGCCTTTTTGGGGTCCTGCGAAAGGTCGGCACCAT ACGTTACAGTGTGTAACCCTCCGCCACCCCCGCCACGTTGCTTCTCCCTC TATGGACCCTCCAATGCTTGTTCACCCCTTTGGCGGAACATATTGGAATG TACTTGGCGTCATCCTTCTCAGATACTCTCAGGGCTCGTTGCCATATCAG GTGCGGCAAGTTTCTATTTTGTCAGCTTTGAGTCTCAACAAGTCAAACCT TGCTCTACGGTCGGTAACAACCAATTCAGTGCCCAGAGAAGATCGAGATT CCGTGGGATTCGTTTCCTAGTATCTCGAAGTATAGACCGTAAAGGTGTTG TTCTTGGGAGGGGCACAAACAACATTCACTCGTAAAGCGGAATGGTAAGG AATAAGTAGGTAAGATAGATGAGACCTTTGAGAACCCGCACCTGGACGCC AGGATCGAACCATCGCACCAAAGCTAGAATATGCAGGAGAGGTATGACAA GGAGCACGTAAGTCTGGGAAACAGCCAGAAACAGTACAAGGCACTGCAGC AGCTCTAGATATGCAGTGAAAACGAGCAGCAAGGCGTACCAACTGAAACC ATAATGGGTTGGAGGAAATTTAAACCGACGATACAATGTAGGCCAAATAC ACGAAGGACATTTACCGGTCATAGCAATCAGAGAGGTATGCTAACGTATA CTGGTACCATACAATAATTGAAAAAGAGACGAGGGTACAGCTGGAATGGC GTGGTATTACTAGGTTTTGAGAAACCCGGAAGAAAATTGGAGAGGTGCTT GCGGCAAGAAATTTCGGGGGATACAAAGGAAGACATACAGTGAGGAATAT CTGAAGATTTACGGGAAGTTGCAAGCACAAAATATACAAGCGTTTGTCGC TATGGTCCGATGTACAACATATCATTTTCGAGTAGGGGGCCTCGACTTGG TCGCAGGAGAGGGAGAAATAGTACGAAGGAGGACGAGGATACGAACACCT GCCTATGCGGCAAGGCTGCAAGAGAGTCGACTGCACACATCATCTGAGCA CGTGAACTGTAACAAAAGGGGGGGGAGCCGTCGAAGGAGAGGTACAAGAA AAAAAAGACGGACGTGACAGGACTGTGAGGTTGGAATATATCATATAGTA AGCGAGAGGACAACCGCTTTACCGTAAGGCAAGCAGCACGTGAGAAGGAT CCCCATTGCATCGCTGCCCGCCACGACGACGCCACACACGCGCGAGCGCG CCCTCAGCGACTGCTGTCGACTGAAAAACCGTGAATCCACCGTAGTATCG CCCTTTAACATACATACATCCCAATGCAGCGAGCTGTGCCGTCGTGGAGG TGGAAGGGGCGTTCTTCATTGGCCTTGTCTCAGCCGTGATCTACCTTGGG TGCTCTCGATTCATGGACATAGTGCGAATCGACGACATGGTGAGCAGAGT GCGATAACTGGAGGCATGTTTGGCGGGAAAGGGATACCACGGAGTGCTGA CTGTGTCCCTGTACTTTTAGTCGATTGGAGAAGCCGTCGGAAGTGCTCCC AAAGTCAGGCGGTCACAGCGAATCCAGCTTTTCCCACGAACAAAATTGTC GTCGTTTTCAAGTCGTTTTGGTCCGGGTACAGATGAACGTGCCCTTCATT TTCGCGCTCGTTTTTCAACTCCTTCAGGTGGACGCGGCACCAGTGCACCT GGCTAACGGCGTGTGGGGGATGATCGCCGCTGGCCTTTTCACGTCACAGG AGGGATACAGCGCGTCCTACTATGCTGATCGAAGCGAACAGTGAGCATAC AGTAGTGGCGCTCTCATTTCTGTTGATCCTAGACACCCACAATCGCCAGA CGTCGAAGAGATGACGGTGTGCTGAACAGGTTCAAAGCAATGCACAACAC CTGCTGGATGTTTGCAACCTGGAGAGGTTTAAAAACGTGTGGTTTTGCAA ATCATTTTGTGTCTGGTGTTCTTGTCGATTGCAGGTGCTGCGGGTGGCTG TACGGCTGCGGAACGGCCCAGATCCTGGCCAACCTCTCCTTCGTTCTATC CATTTTGTGCTGGGTAGGCCTGATGACGTTCATGACTGGGTTTAGTCTGA AATACGTGGGACTGCTGCGTATCAGGTGAATATCTTCTCGACTGTCCCAC CAAGTATATGAAAGCGTCTGCCTCCTGGTGGGCAGGGATGTCGTGACTGG GGTGTGTGTGCTCACGTCTTGGCCTCATGCAGCATTTGCTGCAAAAAAGA ACACTTCAGTCTCCGTGAAACATCGCTGAAAACGCTGCCATGTGAATGTG TCTGCACGCGCCCTTCGCTGTTTGGTACCACTCGGTGCTCGTCGTTCGAA GGCGGCTCGCCCAGCGTTTCGAAAGCGACGACATCAGGCACAATGGGCGA CTGCTCAACGTTCGTGCACGTGGTATCGTGAAGGGTTCGGGCCGCACGTT CACATTGGGTGTGCAACATGAAGTAGCGCAACGCCACGCTGCAACAACAC TAGTAGATCTAGCTTTCGTACGACGCTGCGAGCAGAGGCCTGTACAAACC GGGCACTCGCTCCCTTCCGACCTCCGTACAAGAGCAACACGCTTTTCTGT CTTTCCCGAAACCCTTCTGCATGTAAGTGAGGTATCGGAACGGTTTGGAG CGGACGCACAGCACGGTTACAGACGTGTAGAACTACCGGACATCGTCAGG AAGGTGCTGTCTCAAGTAGAAGGCCTCGTGGCAAAGGCTGCCGACGAACG TGATCCACCATCAGTCGTGTCAAGCAATTCCGGCAGGAAGTCGAAACGAA AACGCCCAGAGACTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9976:41..5607+

>mRNA_Ecto-sp8_S_contig9976.31855.1 ID=mRNA_Ecto-sp8_S_contig9976.31855.1|Name=mRNA_Ecto-sp8_S_contig9976.31855.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9976:41..5607+ (Ectocarpus species8 EcLAC_412)
GTCCACACTACCGGAGGAGTGGCCTCCCTTGTGATGATGATTCTCATAGG
GCCGCGCTTGGGCCGTTTCTCTGGTGGCATGTCCACAAAAACAACGGAGC
AAAGCACGCTGGGAGCTTTCATGCTATGGGTGGGTTGGTACGGGTTCAAC
GGCTGCAGCACGCTGTACATAACTGGCAGCTCGCACGTGGCAGCCAAGGC
AATGGTATGTACGACCATCTGTGCCACATCGGCCGGTCTGGGCGTCACCT
CCGCAAGCTTGGTCTTGTTTCAACACGTGGAACCCCAGGATGTTGTCAAC
GGCATACTCTCAGGGCTCGTTGCCATATCAGCGAGCTGTGCCGTCGTGGA
GGTGGAAGGGGCGTTCTTCATTGGCCTTGTCTCAGCCGTGATCTACCTTG
GGTGCTCTCGATTCATGGACATAGTGCGAATCGACGACATGGTGGACGCG
GCACCAGTGCACCTGGCTAACGGCGTGTGGGGGATGATCGCCGCTGGCCT
TTTCACGTCACAGGAGGGATACAGCGCGTCCTACTATGCTGATCGAAGCG
AACAGTGCTGCGGGTGGCTGTACGGCTGCGGAACGGCCCAGATCCTGGCC
AACCTCTCCTTCGTTCTATCCATTTTGTGCTGGGTAGGCCTGATGACGTT
CATGACTGGGTTTAGTCTGAAATACGTGGGACTGCTGCGTATCAGTGAGG
TATCGGAACGGTTTGGAGCGGACGCACAGCACGGTTACAGACGTGTAGAA
CTACCGGACATCGTCAGGAAGGTGCTGTCTCAAGTAGAAGGCCTCGTGGC
AAAGGCTGCCGACGAACGTGATCCACCATCAGTCGTGTCAAGCAATTCCG
GCAGGAAGTCGAAACGAAAACGCCCAGAGACTTGA
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