mRNA_Ecto-sp8_S_contig9975.31852.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9975.31852.1
Unique NamemRNA_Ecto-sp8_S_contig9975.31852.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9975.31852.1 vs. uniprot
Match: D8LIG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG4_ECTSI)

HSP 1 Score: 387 bits (995), Expect = 4.430e-130
Identity = 239/290 (82.41%), Postives = 241/290 (83.10%), Query Frame = 2 
Query:   32 PADAVRALFAAAVQRAAEARWRRDSMEDCCNEAAAKNQAGAAELATRRAAARRAKATKLSMEVKCREQAQLNQLTVEHSKTAKAGEEARSAELREKFETAVPSIQEKLKLEAERRRQQRLDNDELRAKLISFAEQTRLSKEACAAQLTPASLRVEIARAKCEQQEAERKAADARADSLQVELERATASHAKLKADTTQRERSLTKIQNILNERKTMSAGLDAKTKELLASRASMESECAVLREVVASEEAAKSHKKMAERLQGLCSQLELEVASSRLGLDAFQADPALRG 901
            P DAVRALFAAAVQRA EARWRRDSMEDCCNEAAAKNQAGAAELATRRAAARRAK TKLSMEVKCREQAQLNQLTVEHSKTAKAGEEARSAELREKFETAVPSIQEKLKLEAERRRQQRLDNDELRAKLISFAEQTRLSKEACAAQLTPASLRVEIA AKCEQQEAERKAAD                                           MSAGL+AKTKELLASRASME+ECAVLREVVASEEAAKSHKKMAERLQGLCSQLELEVASSRLGL  FQADPALRG
Sbjct:   27 PVDAVRALFAAAVQRAVEARWRRDSMEDCCNEAAAKNQAGAAELATRRAAARRAKVTKLSMEVKCREQAQLNQLTVEHSKTAKAGEEARSAELREKFETAVPSIQEKLKLEAERRRQQRLDNDELRAKLISFAEQTRLSKEACAAQLTPASLRVEIASAKCEQQEAERKAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMSAGLEAKTKELLASRASMEAECAVLREVVASEEAAKSHKKMAERLQGLCSQLELEVASSRLGLAVFQADPALRG 316
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9975.31852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIG4_ECTSI4.430e-13082.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9975contigEcto-sp8_S_contig9975:1963..6894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1372
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionTaxilin family
Ec32 orthologEc-18_003770.1
Cds size798
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9975.31852.1prot_Ecto-sp8_S_contig9975.31852.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9975 2431..6788 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145367.0793486-UTR-Ecto-sp8_S_contig9975:1962..24301681145367.0793486-UTR-Ecto-sp8_S_contig9975:1962..2430Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9975 1963..2430 -
1681145367.1855679-UTR-Ecto-sp8_S_contig9975:6788..68941681145367.1855679-UTR-Ecto-sp8_S_contig9975:6788..6894Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9975 6789..6894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145367.0945797-CDS-Ecto-sp8_S_contig9975:2430..25561681145367.0945797-CDS-Ecto-sp8_S_contig9975:2430..2556Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9975 2431..2556 -
1681145367.1087346-CDS-Ecto-sp8_S_contig9975:3045..31231681145367.1087346-CDS-Ecto-sp8_S_contig9975:3045..3123Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9975 3046..3123 -
1681145367.1192741-CDS-Ecto-sp8_S_contig9975:3887..40641681145367.1192741-CDS-Ecto-sp8_S_contig9975:3887..4064Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9975 3888..4064 -
1681145367.131336-CDS-Ecto-sp8_S_contig9975:4334..44101681145367.131336-CDS-Ecto-sp8_S_contig9975:4334..4410Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9975 4335..4410 -
1681145367.1432362-CDS-Ecto-sp8_S_contig9975:5234..53921681145367.1432362-CDS-Ecto-sp8_S_contig9975:5234..5392Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9975 5235..5392 -
1681145367.156169-CDS-Ecto-sp8_S_contig9975:6195..62881681145367.156169-CDS-Ecto-sp8_S_contig9975:6195..6288Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9975 6196..6288 -
1681145367.1720092-CDS-Ecto-sp8_S_contig9975:6698..67881681145367.1720092-CDS-Ecto-sp8_S_contig9975:6698..6788Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9975 6699..6788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9975.31852.1

>prot_Ecto-sp8_S_contig9975.31852.1 ID=prot_Ecto-sp8_S_contig9975.31852.1|Name=mRNA_Ecto-sp8_S_contig9975.31852.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=266bp
MEDCCNEAAAKNQAGAAELATRRAAARRAKATKLSMEVKCREQAQLNQLT
VEHSKTAKAGEEARSAELREKFETAVPSIQEKLKLEAERRRQQRLDNDEL
RAKLISFAEQTRLSKEACAAQLTPASLRVEIARAKCEQQEAERKAADARA
DSLQVELERATASHAKLKADTTQRERSLTKIQNILNERKTMSAGLDAKTK
ELLASRASMESECAVLREVVASEEAAKSHKKMAERLQGLCSQLELEVASS
RLGLDAFQADPALRG*
back to top

mRNA from alignment at Ecto-sp8_S_contig9975:1963..6894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9975.31852.1 ID=mRNA_Ecto-sp8_S_contig9975.31852.1|Name=mRNA_Ecto-sp8_S_contig9975.31852.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4932bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9975:1963..6894- (Ectocarpus species8 EcLAC_412)
GTCGCTTTGCGCCAAGGAAGGTTCCGAAGTGCCGGCGGACGCCGTCCGAG
CCCTTTTCGCCGCGGCGGTGCAGAGAGCGGCGGAGGCCAGGTGGAGGCGA
GACAGCATGGAGGACTGCTGCAACGAGGCGGCGGCGAAGAACCAAGCCGG
GGCGGCGGAGCTGGCGACGAGGCGTGCTGCGGCTCGCCGAGCGAAGGTGA
GGAAGGAAAACGGGGCATGACGTGGGGTCGGAGGTAAACTATGTAGATCT
GCGTGCGTTTTGGTTTTGCGCGAGCAGTCAACGCGAACCACCGGTATCTG
TGTTGGTGAAAACGTAGGCGTGGGTGTGTTTGTGTGTCTCCAAGCCGTTT
TTCTGTCTTGCATGGAGGCGTGAGAAGGGAGGGTTGGGGGACGCCCTGAA
CGGAGCGGACGGTTTAATCAAAACACCACCAACGACGACGGAGGAGTCAG
TCTCGTCTTGCAAAGAGAGATGGTGATTACCTCACAGCCTTTGTCACCAA
GATTTTTTTTTTGTCCTGTGGACCGAGCTCTTCAGTAACGTGTCATGCAA
TTCTTTCTTTCGCGCCTTGGTTTTGGCCGTTGTTGTTGCTGCTACGGCCT
GTTCAGGCGACAAAGCTTAGCATGGAGGTCAAGTGCCGCGAACAAGCCCA
GCTGAACCAACTCACGGTCGAGCATTCGAAGACGGCAAAGGCGGGCGAGG
TGAAACATCATCCAAGCGCAGATGTTACCGAAAGCCCCGCTCCTGCGGAT
GTTTAGTGGCGTTCGTCGCCTGGTTTAGCCATATTTTTTCAGTCCGCTTA
TCAGCCGCCGATAGCATCGAGCCCGTCGAATTGGTAGTCTGTTTTTTGTT
AACCAATGAAATTTTCTCCTCTCGGCTACAATACTCTTCAAATTCTCCGT
TACGTCTCGCATCTCGTCACGCGTGTGCGTTAGTTAGCGTTGCCTGCATT
TTGGTTTATCATTCTACAACAGGAAAATCCGCTATGCGCAGCTGGTGCCT
GAAACCCTTCCACGCATCGCCAACCGTTTAAAGCCTGATTTCCAGGCGCA
GTTTGTGACGCTCCTGAACGGTCACAACGGACCCATCGGCGCCGCCCCTA
CGGGTTGGTCTGTTAGTGCCTACACACGCCACAAACACAAACCACCTTGC
CAGACGAAGGAACGAACATTCCTTTCAAGAACTAAGGGGTTACCGAGATA
GAAAGAGCAAGGGCCAGGAAGGTAGACTTATTTTGTCGTTGTTCAACAAC
GAACAGAGCTTTGGCAACCCACCAGCCCCCGCGTATTCTACTCAGCTGCA
ATACATACAAGGAGCACACAACGCGGGGCTGAGGTGTACTCGGGTTAGCC
GTCCCCAGCACCTTGTAGCCGAAAAACTCAATATTGAGTGTGCGTGTGTG
TAAGCATATCAACGCTAACTTGACATAGAGTGTGCGTGTGTGTATGCATG
TCAATGCTCTCCGTCTCTCACGGCCCAAATTTTCGCGACAATGCCGTGAC
AGGAGGCGCGCAGCGCCGAACTCAGGGAAAAGTTCGAGACGGCAGTTCCC
AGCATCCAGGAGAAGCTCAAGCTTGAGGCGGAGAGGCGGCGGCAGCAACG
GCTGGACAACGACGAGCTGCGCGCGAAGCTGATCAGCTTCGCCGAGCAGA
CGAGACTCAGGTGCGCCACCTGTTGGATGACTGGACATATATCTACCCCC
TTACCGAAATGAAGTGGTTGGGTGAGTGTGTTTTGGTTGTTTTTCAGTAT
TTCAGTTTTGAGGACGCAATGTTGTAAGAGCAGGATTTATGCGGGCACTT
CAAACTGTCAGAAGAACCGTTCCGAGATCCATGGGAACTCGCGAAGTCGG
CTGGTGGATACACCGATCTGAAGGGCCCGAAGTGGTTAGACTGCTTGAGT
CGGAAAAGAGCTTCTATAACAGGGCCTTCGTGAGATACCTGCGAACGGAG
AAGAAAAAGAAGCGGTGAAAGCGGCGTAAACTACTGTGGGGGGAAAACTA
AACCGCTTGGTTTTCCGCCGCGTTTCGCGATCTTGACCCCAGTGAAGTAT
TGAGAGGCTCTTGCCGCTGCCGCTTTCGGACAGGCAATGATATGGGCAAA
GGGCGTGTTTGCTTCCGGCAAACATGGATCGTTCCAAACCCGCCTGGTAT
TTGATTTCACAACAGGGATTTGTGTTCTGCTCGATTGTTCGGTTGGAATT
TCCGCCGTCACTATCCGTCTGTGACGATAGTTCCATCCACGCGAATTGTT
TTTCGAGATAGTGAGACTGGCGTACGTTCACGAGCCGTATATACATCGGT
GGAGGATTGCATGTATCGCCAGTCGCATCCAATGTTTTTTTTTGGGAATC
TCCCCCCCCCCCGATCGAAGCGGAAGGAGCGAATCACTGCACTGTCGAAA
CGTTCCAACGCTCAAGCTGATCCCCCTTTTGCGTTTCGGTCGTTCATATT
TGTGTCTACATTACTTGTTGCGGCGGAAGCACAGCAAGGAGGCTTGCGCC
GCGCAGCTGACTCCGGCATCCCTCCGGGTCGAGATCGCGAGGGCCAAGTG
CGAACAGCAGGTGCGGGGTGACGGCACACAGTGGGACAATTATGTCTCGC
ATGTTTTTGACATCGGCCTGGTGCCGGTGCCGCATCTCATCTCCCATGAT
GATGACCTGGTCAACAGTACAACGCACACTCAAGCCTGAGTTTCCCGAAA
GTCTTGGACGCCCAAGGGCAGCAATGAAATATCAAGTCGTAGCGCGTTGC
ACAAGCCCTAAGTGTACCACGGACGGCTCGAATCAACAATCGTCCCGCTC
CCGCAAAAATTTCACGAAACGCATCTGTAGGAAGCCGAACGAAAGGCCGC
GGATGCAAGGGCGGATAGCTTGCAGGTGGAGCTGGAGCGCGCTACGGCCT
CACACGCCAAGCTGAAGGCCGACACTACCCAACGCGAGCGGAGCCTGACC
AAGATCCAGAACATCCTCAACGAGCGGAAGACCATGTCGGCTGGGTTGGA
CGCCAAGGTACCTCGCGCCCGCCATTTGTAGCCGTTATACTTTTAGTATC
ACGGCAGTCGGGTCGTATGCAAACTCGCCGCGATTTCCCGCCGAAACCAA
ACACCCGGGGCTTTTGTTGATCACCCGGCCTTTCCATCTGGGCCACGGAA
CTCCGAAACCCATTATCACCCCGTGGTAAACAGCAAGCCCCGGCCGTCGT
TGTTTCGAATCAATGATCGACCCGTCCGTTGTCATTTGTCTCCAGCACCC
TGACGGCGACGAAGACTTCGAGCCGCCCGCGGCGACCAGAAGAACACGAG
CAGGCCTAAGGTCACCCCGACCTTAGACTTGCTGTTCTGCTCGCCGCGGG
GGGCTCGAAGTCGTCATCGCATCGCTGTCAGGGTGCTGGAGATGAATCAC
AACGGACGGGTCGATCATTGATTCGAAACAACGACGGCCGGGGCTTGCTG
TTTACCAGGGGGTGATCATGGGTTTTGGAGTTCTGTGGCCTAGATGGAAA
GGCTGGGTGATCGACAAAGCCCCGGATCTTAGTTTTTGGCGGGACATCGC
GGCGAATTTGCATTCAGCCATCGTTGAAAGTTGTTGATGGACTTGTGCAG
GAGGATACCTTGCAGTGTACCTAGATGAAGTCTATAAGGAAATCGACCAC
GCATGGACCCATCCTGTGTCCTCCGCACCCTTTGATCCCCTCCTCCCCTC
CCTCGCCGGTCGCATTTTTTCCCATCTATTCAATCCGGCGGTGTACACGC
CTCCGCCTCCTCCTCCTCCAGACCAAGGAGCTCCTCGCCAGCAGGGCATC
GATGGAGTCTGAGTGCGCTGTTCTTAGGGAAGTGGTGGCAAGTGAAGAGG
TGAGGGCATGGGTGTTGTTTTGTCGGGTACTGTACCGCTGTAGCGAACTC
CGCTCGACTGTTGGGTTTTGAGCTAAACCTCGAAGACACCTGTACAGATT
ACGGCATTAATTTCTTTCTTGATGTCAGAGAGCTACATTGCGACTCGCGT
GATACCCGACGCACAATACATCAACTTGTGGCTCCTTATTGCCCTTGCCA
GCACGCTCTCTGTGAAGAAATAATAGGGCTTGAAATGAACTCGAGGGGCA
ATCACCCCCGAGCTGCAATCATTCACCTATGATGTCTGCTGTGATTCGCT
ATTCCTGGCGACGAGTTTGCTTGACAAGAGTCTCCCGTAAGCATCAAATA
ATCTTCTTCACGCACCCGCGCGGTTGACTGCCCCGTGGTCTCCCCACTTG
CGGTCCTTATTTCGAGCCGCAAGCAACAGCGGTGTCAACGACGGTCACCG
CACGTTCCAACGCTCTCTCTCCGTGTCCGGTGCATCAGGCTGCGAAGAGT
CACAAGAAGATGGCGGAGCGCTTGCAGGGCCTGTGCAGTCAGCTGGAGTT
GGAGGTCGCCTCTAGCCGCCTTGGTCTGGACGCTTTTCAAGCTGATCCCG
CTCTGCGAGGGTAGCGCGCTTTGCACACGGCGCCGGCTTGAGCGCTCAGT
TTCTACAACTGCTGTATCGTATTGTACAATGTACCCTAGACACCGAAGCT
GGCTCTCGTTTGTTTGTGTACTGCTGACGTCTTAATACGTTTCCACATAC
ACGTGTATGTAGGCGGTTGACCTCTCTTTGGCTTGTGCTGTCGTGTGTTG
TCCGAAGCTGTAGTGTCGGACCTGATTCTACCTAGCGGCACCGTTGCCTT
ACATTTGGCCGGGTGCAGTTTTGGTGTGTGTTTTGAACATGTTGAAACTC
AACTCGGGTTGGGATTGGCACTATTATAGGAGGAGGTAAACAATATCTGC
GATGTGCCACCTTTGCCATTTGCTTCGTTCGGAGAACTAACATGCCGAAG
TCCGTCCAATTTTTAGGCGACTCACCTCTCGTCGTTCGCCTCGCACCTGT
TGCAGCCGACTTTCAGAAACTTAAAATGCCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9975:1963..6894-

>mRNA_Ecto-sp8_S_contig9975.31852.1 ID=mRNA_Ecto-sp8_S_contig9975.31852.1|Name=mRNA_Ecto-sp8_S_contig9975.31852.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9975:1963..6894- (Ectocarpus species8 EcLAC_412)
ATGGAGGACTGCTGCAACGAGGCGGCGGCGAAGAACCAAGCCGGGGCGGC
GGAGCTGGCGACGAGGCGTGCTGCGGCTCGCCGAGCGAAGGCGACAAAGC
TTAGCATGGAGGTCAAGTGCCGCGAACAAGCCCAGCTGAACCAACTCACG
GTCGAGCATTCGAAGACGGCAAAGGCGGGCGAGGAGGCGCGCAGCGCCGA
ACTCAGGGAAAAGTTCGAGACGGCAGTTCCCAGCATCCAGGAGAAGCTCA
AGCTTGAGGCGGAGAGGCGGCGGCAGCAACGGCTGGACAACGACGAGCTG
CGCGCGAAGCTGATCAGCTTCGCCGAGCAGACGAGACTCAGCAAGGAGGC
TTGCGCCGCGCAGCTGACTCCGGCATCCCTCCGGGTCGAGATCGCGAGGG
CCAAGTGCGAACAGCAGGAAGCCGAACGAAAGGCCGCGGATGCAAGGGCG
GATAGCTTGCAGGTGGAGCTGGAGCGCGCTACGGCCTCACACGCCAAGCT
GAAGGCCGACACTACCCAACGCGAGCGGAGCCTGACCAAGATCCAGAACA
TCCTCAACGAGCGGAAGACCATGTCGGCTGGGTTGGACGCCAAGACCAAG
GAGCTCCTCGCCAGCAGGGCATCGATGGAGTCTGAGTGCGCTGTTCTTAG
GGAAGTGGTGGCAAGTGAAGAGGCTGCGAAGAGTCACAAGAAGATGGCGG
AGCGCTTGCAGGGCCTGTGCAGTCAGCTGGAGTTGGAGGTCGCCTCTAGC
CGCCTTGGTCTGGACGCTTTTCAAGCTGATCCCGCTCTGCGAGGGTAG
back to top