mRNA_Ecto-sp8_S_contig9974.31851.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9974.31851.1
Unique NamemRNA_Ecto-sp8_S_contig9974.31851.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9974.31851.1 vs. uniprot
Match: A0A6H5KBZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.610e-27
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 2 
Query:  392 ACADGLLTAVETPPSNGGXXXXXXXXGSPAGHGGTGHNIVGGGGRAGTRSGGSVGLGGARAKREAQQALAHQQQA 616
            ACADGLLTAVETPPSNGG XXXXXXXGSPAGHGGTGHNI+GGGGRAGTRSGGSVGLGGAR KREAQQALAHQQ A
Sbjct:    8 ACADGLLTAVETPPSNGGGXXXXXXXGSPAGHGGTGHNIIGGGGRAGTRSGGSVGLGGARTKREAQQALAHQQPA 82
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BLAST of mRNA_Ecto-sp8_S_contig9974.31851.1 vs. uniprot
Match: D8LTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT9_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 6.590e-21
Identity = 61/75 (81.33%), Postives = 61/75 (81.33%), Query Frame = 2 
Query:  392 ACADGLLTAVETPPSNGGXXXXXXXXGSPAGHGGTGHNIVGGGGRAGTRSGGSVGLGGARAKREAQQALAHQQQA 616
            ACADGLLTAVETPP NGG        GSPAGHGGTG NIVG   RAGTRSGGSVGLGGARAKREAQQALAH QQA
Sbjct:    6 ACADGLLTAVETPPLNGGGSSGSSAAGSPAGHGGTGPNIVGXXXRAGTRSGGSVGLGGARAKREAQQALAHLQQA 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9974.31851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBZ4_9PHAE4.610e-2794.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT9_ECTSI6.590e-2181.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9974contigEcto-sp8_S_contig9974:3041..5928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score100.5
Seed ortholog evalue5.1e-19
Seed eggNOG ortholog2880.D8LTT9
Model size617
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28HE3@1,2QPS9@2759
Cds size333
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145367.0186098-UTR-Ecto-sp8_S_contig9974:3040..33231681145367.0186098-UTR-Ecto-sp8_S_contig9974:3040..3323Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9974 3041..3323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145367.032468-CDS-Ecto-sp8_S_contig9974:3323..34131681145367.032468-CDS-Ecto-sp8_S_contig9974:3323..3413Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9974 3324..3413 +
1681145367.045603-CDS-Ecto-sp8_S_contig9974:5685..59281681145367.045603-CDS-Ecto-sp8_S_contig9974:5685..5928Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9974 5686..5928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9974.31851.1prot_Ecto-sp8_S_contig9974.31851.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9974 3324..5928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9974.31851.1

>prot_Ecto-sp8_S_contig9974.31851.1 ID=prot_Ecto-sp8_S_contig9974.31851.1|Name=mRNA_Ecto-sp8_S_contig9974.31851.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=111bp
MQDGSRGGGIRSAMVTPRLTRNSASLQSLQAAAHAAACADGLLTAVETPP
SNGGGSSGSSAAGSPAGHGGTGHNIVGGGGRAGTRSGGSVGLGGARAKRE
AQQALAHQQQA
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mRNA from alignment at Ecto-sp8_S_contig9974:3041..5928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9974.31851.1 ID=mRNA_Ecto-sp8_S_contig9974.31851.1|Name=mRNA_Ecto-sp8_S_contig9974.31851.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2888bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9974:3041..5928+ (Ectocarpus species8 EcLAC_412)
CAGCGAGAGAGCCGGGGTTTGCCCTCTCTTGCGATTGTAGGAGAGCTATC
GCATTGGTCCGCCCAGCCCCTTAGAGGTTGATCTCTCTGCGGAAGGTGCA
GCGTAAGCAGGGAGAGCACGCCGCCGCACCGAGGATCAAAAGGTTGGCGC
AGTTTCTCTCGTGGAGTTAGGAAACGCTGCTGTTATTTTTTCTCGGCTCT
TTTGGTGCGGAAAAATTTGGTCTGGAACGGCCGCCCCCCGCGCGGCAGGC
GGGAGGCGTTCGGTTGATCGACAGAGTCGAAAAATGCAGGATGGATCTCG
CGGCGGAGGCATCAGGTCAGCGATGGTGACGCCACGATTGACGCGCAACT
CGGCGTCGCTGCAGAGTCTCCAGGTCAGAGTGGTTTGACGCGCAACGATA
ATCTGTGTGTCTCAGTTTTTTTTTGAACGTCTTGTGTTGTGTCCAAAATC
GAAAAGGTGTGTCGTCGAGAGGTGGTCTGTCCCTTTTTTTTCGCAGAGAG
ACGGAAAGACAAACCTGGCCTTAGGAAGGAGAGGGTTTCAAAAGGCCAGG
CTACAGAGGGTGGATATGGTGCTTCGGAACTGTCGGGAAGTTGTCGGCGA
TCCATGCATTTCAAGGTGCTTTTCTCTCGCATCCGACTCATACCATCACG
CACAACATCGACAACCCAGCAGCTGGATCAGTAACAAACAACCCAGATTA
CAACGATTCCTCTCTTTTTTTTTGAAACTGGGTGTGCGCATGGCGGATGT
AACCAAGGAACGAAATAAGGCTTGTTGTTTGTGTGGGACATGCGTGGGAG
GTTTCCCCGGTTCCTCTAAGACTCTAAGAGTGTATACCCCATTGCAGCCG
AAGCTGCCCCACGGGCGTGACTTCGGCGTTGACATGACTTGTTTGCCCTC
TCGTCTTGTCCAAGTTGCTGTTGGTGTGTTGTAGCGCTTTGCTACCAGGG
ACAGCGGTTCGTAGTCGGATTATCTATGCTACACGTGTCTGTCTTCGCGA
AAAGTCTCACACAAAGAACAAGAGCAGCACGTCATGTTTGTGTGACAGGG
GGCGGGCGGTGTTGTGGGGGACTATGGCCACGGCCACGGCCAAGTTTGCA
CGAACACTCTTTCACGGCGCATGTTCTATCTGCTTTACTTATCTGCATGT
ACACATTTTTGTAGCGGTTTCTTTTGGAGAACGTTCCATGATCCTGCAGA
GGTATAAATAGGTATAATAGTACATACAAAACATGAAGTAACCACCAGCA
CATCCCGATTTGGGAGCACGTGCTGTGCACTGCTGCAAGTACCATGGTTG
CATCGGCGGAAATATTTGCTTTAGTGTGCGTACATCGGCGCTTCTTGATG
TGCTTGACTCAACGCCTGCCCACAGCGGCCAGTTGCGGGACCACTTGTGT
CCTAAGCATCCAATGGCCGGTTCCACAGGTGCGTGAGGATATCTTGCTGT
CTCGATCCCGTAGATGTGCATATCTGCATGTCTGCGAGCAATGCAGGACC
TGGGTGGTGTGCTTGTGGGTTCATCACCGAATTCCTGCCGTCTCACATAC
TAAGTACATCTAGCGCAATTTAGACCCAGGAGGAAGAATACAGCGGGTGC
GTGCGAAGTAGGTTGCAGCAGGGCACACACCTGCAGCAATTCCTTCTAAA
CAGCAGTGGCGCCGGCGTCCAGCCGATGGTATATGCATAGAGCCGATACT
CGTCTTGCCGCTCTTCGCCGAAGGTTCTCCGCCTGCTAGTAGAAATACTA
CGAGTACACGTCTAGCCGCGTGTCTCATACACGTGGTGAAAACGATAACG
TTCTAAAAATGGAGCAGGGGCAACTTGCTCCTGTGAATACCTTATATCAC
TGATCCCTCAGCGGATAGTTGGTCCACCGGAGAGTGGGCGAGCCTTCGTG
GACTCATTTTTCCCATCCTCCTATCCAGCAATTTTTGCTCAAAACTCCGA
CACATGCATCCCTTCGATTGAGAAACATGGTTGTCTCGAATGGGTATTGT
CTGATTTTGTGTGTAGTTTTTTTTTTTTTTTCTTAGTATGACACAACGAA
TCCATCACAGAAAAGAGTCAGAGACAGATTAGCAATGAATTCATAGCGTC
AGAGAAAGCTACCTGTATGTCAATGATCTCCCAGACAGCATCTCTTTAAA
AAAATGGTGAACTATTTGTAACTCTGTAGTATGTAGCATGCAGAGCTGGG
CACTCCCCGACCCTCTTCCGCGCGACAACCCGCGTCTCCGCCGCTTCTAA
ATAGGGACCGGCGGGGGGCAGCTTTGTGCTGCTTTGCCCTTGCGTTCCAA
CTCTCGCTATTTTAGTTGTGCTTCGTCAGACCATTGGCGGTTTACCCTCC
TGTTTTTCTCCCATCGCAAAGATACATACCTTCAAAAGGTTGACACTTTT
GTACCAAAACCACACAGCAATACCAGCCCGATCTGATTGCGCCGCTCACA
TCAAGATCGAGCCCCCCGCTGAAAGACCCTCAGCCCGTGGCGATGCATCT
CTCACCCTCCCCTTTTTGGCAAAGAGGCGGTTGACCATCGGTAGTTGTGG
TAACAATGCTCCGTCCTCTCGTCAATGGTCTAACGACTACGGCATGCATG
ACTATGAGTTCCCCCCCCCCTCCCCCTCCCTCCCTCCCCCCGAAGGCTGC
TGCGCACGCCGCAGCTTGCGCGGATGGCCTCCTCACCGCGGTGGAAACCC
CTCCGTCGAACGGCGGCGGCAGCAGCGGCAGCAGCGCCGCCGGCTCCCCG
GCGGGGCACGGCGGGACCGGTCACAACATTGTCGGCGGCGGGGGGCGAGC
GGGGACTCGAAGCGGCGGGAGCGTGGGCTTGGGCGGCGCGCGCGCCAAGC
GAGAAGCCCAGCAGGCTTTGGCCCATCAGCAGCAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9974:3041..5928+

>mRNA_Ecto-sp8_S_contig9974.31851.1 ID=mRNA_Ecto-sp8_S_contig9974.31851.1|Name=mRNA_Ecto-sp8_S_contig9974.31851.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9974:3041..5928+ (Ectocarpus species8 EcLAC_412)
ATGCAGGATGGATCTCGCGGCGGAGGCATCAGGTCAGCGATGGTGACGCC
ACGATTGACGCGCAACTCGGCGTCGCTGCAGAGTCTCCAGGCTGCTGCGC
ACGCCGCAGCTTGCGCGGATGGCCTCCTCACCGCGGTGGAAACCCCTCCG
TCGAACGGCGGCGGCAGCAGCGGCAGCAGCGCCGCCGGCTCCCCGGCGGG
GCACGGCGGGACCGGTCACAACATTGTCGGCGGCGGGGGGCGAGCGGGGA
CTCGAAGCGGCGGGAGCGTGGGCTTGGGCGGCGCGCGCGCCAAGCGAGAA
GCCCAGCAGGCTTTGGCCCATCAGCAGCAGGCC
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