mRNA_Ecto-sp8_S_contig99525.31824.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99525.31824.1
Unique NamemRNA_Ecto-sp8_S_contig99525.31824.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: V9W0Q4_9RHOB (Transposase n=1 Tax=Leisingera methylohalidivorans DSM 14336 TaxID=999552 RepID=V9W0Q4_9RHOB)

HSP 1 Score: 72.4 bits (176), Expect = 3.750e-14
Identity = 36/47 (76.60%), Postives = 37/47 (78.72%), Query Frame = -1
Query:    1 MTKFNLYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 141
            MT   LYR  RFPPDVIAHAVWLYFRFP SLRMVE L AER II+ H
Sbjct:    1 MTDVRLYRRHRFPPDVIAHAVWLYFRFPLSLRMVEDLLAERGIIVSH 47          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: A0A2S8S5L2_9RHOB (Putative transposase n=1 Tax=Defluviimonas denitrificans TaxID=404881 RepID=A0A2S8S5L2_9RHOB)

HSP 1 Score: 69.7 bits (169), Expect = 4.720e-14
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = -1
Query:    1 MTKFNLYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 141
            M+  NLYR  RFPPD+IAHAVWLYFRFP SLRMVE L A+R II+ H
Sbjct:    1 MSTPNLYRRHRFPPDLIAHAVWLYFRFPLSLRMVEDLLAQRGIIVSH 47          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: A0A1M4MVR3_9RHOB (Transposase n=4 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A1M4MVR3_9RHOB)

HSP 1 Score: 72.0 bits (175), Expect = 5.250e-14
Identity = 36/47 (76.60%), Postives = 37/47 (78.72%), Query Frame = -1
Query:    1 MTKFNLYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 141
            MT   LYR  RFPPDVIAHAVWLYFRFP SLRMVE L AER II+ H
Sbjct:    1 MTDARLYRRHRFPPDVIAHAVWLYFRFPLSLRMVEDLLAERGIIVSH 47          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: UPI0015A3C542 (IS6 family transposase n=1 Tax=Ruegeria haliotis TaxID=2747601 RepID=UPI0015A3C542)

HSP 1 Score: 69.3 bits (168), Expect = 5.520e-13
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = -1
Query:    1 MTKFNLYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 141
            MT  +LYR  RFPPDVIA+AVWLYFRFP SLRMVE L A+R II+ H
Sbjct:    1 MTNTHLYRRHRFPPDVIAYAVWLYFRFPLSLRMVEDLLADRGIIVSH 47          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: A0A547PNQ7_9RHOB (IS6 family transposase n=1 Tax=Paenimaribius caenipelagi TaxID=2489174 RepID=A0A547PNQ7_9RHOB)

HSP 1 Score: 66.2 bits (160), Expect = 7.950e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = -1
Query:    1 MTKFNLYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 141
            MT+ +LYR  RFPPDVIA+ VWLYF+FP SLRMVE L A R II+ H
Sbjct:    1 MTRTDLYRRHRFPPDVIAYTVWLYFKFPLSLRMVEDLLAARGIIVSH 47          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: UPI001AE1F7A6 (IS6 family transposase n=2 Tax=Rhizobium leguminosarum TaxID=384 RepID=UPI001AE1F7A6)

HSP 1 Score: 65.9 bits (159), Expect = 1.160e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = -1
Query:    1 MTKFNLYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 141
            + +  LYR PRFP DVIAHAVWLYFRFP SLRMVE + A R +I+ H
Sbjct:    4 LARDPLYRRPRFPADVIAHAVWLYFRFPLSLRMVEDMLAARGVIVSH 50          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: Q981F5_RHILO (Transposase n=48 Tax=Hyphomicrobiales TaxID=356 RepID=Q981F5_RHILO)

HSP 1 Score: 65.5 bits (158), Expect = 1.720e-11
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = -1
Query:    1 LYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 126
            LYRC RFP ++IAHAVWLYFRFP SLRMVE + A R II+ H
Sbjct:   14 LYRCHRFPAEIIAHAVWLYFRFPLSLRMVEDMLAARGIIVTH 55          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: A0A2Z2Q6F1_AGRVI (DDE_Tnp_IS240 domain-containing protein n=3 Tax=Agrobacterium vitis TaxID=373 RepID=A0A2Z2Q6F1_AGRVI)

HSP 1 Score: 63.2 bits (152), Expect = 2.430e-11
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:    1 MTKFN---LYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 141
            MT+F    LYR  RFP +VIAHAVWLYFRFP SLRMVE L A R II+ H
Sbjct:    1 MTRFTRDPLYRRHRFPAEVIAHAVWLYFRFPLSLRMVEDLLALRGIIVSH 50          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: A0A6S6NG95_AGRVI (Uncharacterized protein n=2 Tax=Agrobacterium vitis TaxID=373 RepID=A0A6S6NG95_AGRVI)

HSP 1 Score: 61.6 bits (148), Expect = 2.720e-11
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = -1
Query:    1 LYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIMLH 126
            LYR  RFP +VIAHAVWLYFRFP SLRMVE L A R II+ H
Sbjct:    9 LYRRHRFPAEVIAHAVWLYFRFPLSLRMVEDLLAARGIIVSH 50          
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Match: A0A512C3K6_9HYPH (Uncharacterized protein n=1 Tax=Microvirga aerophila TaxID=670291 RepID=A0A512C3K6_9HYPH)

HSP 1 Score: 61.2 bits (147), Expect = 3.770e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = -1
Query:    7 MTKFNLYRCPRFPPDVIAHAVWLYFRFPRSLRMVEYLPAERWIIM 141
            MTK   Y+  RFPP++IAHAVWLYFRFP SLR+VE +  ER II+
Sbjct:    1 MTKPISYKRHRFPPEIIAHAVWLYFRFPLSLRLVEEMLLERGIIV 45          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99525.31824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V9W0Q4_9RHOB3.750e-1476.60Transposase n=1 Tax=Leisingera methylohalidivorans... [more]
A0A2S8S5L2_9RHOB4.720e-1472.34Putative transposase n=1 Tax=Defluviimonas denitri... [more]
A0A1M4MVR3_9RHOB5.250e-1476.60Transposase n=4 Tax=Roseobacteraceae TaxID=2854170... [more]
UPI0015A3C5425.520e-1372.34IS6 family transposase n=1 Tax=Ruegeria haliotis T... [more]
A0A547PNQ7_9RHOB7.950e-1268.09IS6 family transposase n=1 Tax=Paenimaribius caeni... [more]
UPI001AE1F7A61.160e-1165.96IS6 family transposase n=2 Tax=Rhizobium leguminos... [more]
Q981F5_RHILO1.720e-1171.43Transposase n=48 Tax=Hyphomicrobiales TaxID=356 Re... [more]
A0A2Z2Q6F1_AGRVI2.430e-1168.00DDE_Tnp_IS240 domain-containing protein n=3 Tax=Ag... [more]
A0A6S6NG95_AGRVI2.720e-1173.81Uncharacterized protein n=2 Tax=Agrobacterium viti... [more]
A0A512C3K6_9HYPH3.770e-1164.44Uncharacterized protein n=1 Tax=Microvirga aerophi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99525contigEcto-sp8_S_contig99525:63..212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145365.1338162-CDS-Ecto-sp8_S_contig99525:62..2121681145365.1338162-CDS-Ecto-sp8_S_contig99525:62..212Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99525 63..212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99525.31824.1prot_Ecto-sp8_S_contig99525.31824.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99525 63..212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99525.31824.1

>prot_Ecto-sp8_S_contig99525.31824.1 ID=prot_Ecto-sp8_S_contig99525.31824.1|Name=mRNA_Ecto-sp8_S_contig99525.31824.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=50bp
MEHNDPPLCREIFDHTQAPRKPEIQPNGMGNDIRRKTGAAIQIELGHAA*
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mRNA from alignment at Ecto-sp8_S_contig99525:63..212-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99525.31824.1 ID=mRNA_Ecto-sp8_S_contig99525.31824.1|Name=mRNA_Ecto-sp8_S_contig99525.31824.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99525:63..212- (Ectocarpus species8 EcLAC_412)
ATGGAGCATAATGATCCACCGCTCTGCCGGGAGATATTCGACCATACGCA GGCTCCGCGGAAACCGGAAATACAGCCAAACGGCATGGGCAATGACATCA GGAGGAAAACGGGGGCAGCGATACAAATTGAACTTGGTCATGCAGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99525:63..212-

>mRNA_Ecto-sp8_S_contig99525.31824.1 ID=mRNA_Ecto-sp8_S_contig99525.31824.1|Name=mRNA_Ecto-sp8_S_contig99525.31824.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99525:63..212- (Ectocarpus species8 EcLAC_412)
ATGGAGCATAATGATCCACCGCTCTGCCGGGAGATATTCGACCATACGCA
GGCTCCGCGGAAACCGGAAATACAGCCAAACGGCATGGGCAATGACATCA
GGAGGAAAACGGGGGCAGCGATACAAATTGAACTTGGTCATGCAGCTTGA
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