mRNA_Ecto-sp8_S_contig99520.31823.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99520.31823.1
Unique NamemRNA_Ecto-sp8_S_contig99520.31823.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: A0A2R8AQM3_9RHOB (Peptidase_M78 domain-containing protein n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2R8AQM3_9RHOB)

HSP 1 Score: 266 bits (681), Expect = 4.620e-86
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 3
Query:  153 MFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            MFEPNWASPPGDTI+RLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTE LS WGQSFPVRALRELGWLPKGSRGERLSEDILSFFGC SIS W
Sbjct:    1 MFEPNWASPPGDTIARLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEELSRWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCDSISGW 134          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: A0A4R6AC86_9RHOB (ImmA/IrrE family metallo-endopeptidase n=2 Tax=Fluviibacterium aquatile TaxID=2552766 RepID=A0A4R6AC86_9RHOB)

HSP 1 Score: 251 bits (640), Expect = 1.730e-79
Identity = 121/171 (70.76%), Postives = 140/171 (81.87%), Query Frame = 3
Query:   42 LHT*DGDSCIRRWRRSMERCLPDPPESYRN*RGGVCLMFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            +H  + D+C+RR RR +E+        YR  RGG+ LMFEPNWASPPGDTISRLAAAG   I++LAERIGFEED+F+GIMEGRV I  EIADALS+ELGASRQFW ERYNQF+ D+AR+  SAP ++LS+WGQSFP RALRELGWLPKGSRGERLSEDIL FFGC SI+ W
Sbjct:    1 MHFENRDNCLRR-RRCVEKRPSHTFGFYRYWRGGIGLMFEPNWASPPGDTISRLAAAGNVPIYELAERIGFEEDVFAGIMEGRVQICSEIADALSAELGASRQFWSERYNQFVADKARITNSAPIQSLSTWGQSFPARALRELGWLPKGSRGERLSEDILRFFGCDSINGW 170          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: UPI001E55D1FB (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Pseudophaeobacter sp. MA21411-1 TaxID=2899119 RepID=UPI001E55D1FB)

HSP 1 Score: 234 bits (597), Expect = 2.240e-73
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 3
Query:  153 MFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            MFEPNWASPPGDTISRLA AG  S+HDLAERIGFEED+F GIM+GRV I DEIADALS+ELGASRQFWIERYNQFL D+ R+AGSA TE LS+WGQSFP +ALR+LGWLPKGSRGERLS DIL FFGC SI  W
Sbjct:    1 MFEPNWASPPGDTISRLATAGNLSVHDLAERIGFEEDVFFGIMDGRVQICDEIADALSNELGASRQFWIERYNQFLDDKVRIAGSAQTETLSTWGQSFPAKALRQLGWLPKGSRGERLSRDILDFFGCVSIQGW 134          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: UPI0019232A71 (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Rhodovulum sulfidophilum TaxID=35806 RepID=UPI0019232A71)

HSP 1 Score: 226 bits (576), Expect = 3.270e-70
Identity = 104/134 (77.61%), Postives = 117/134 (87.31%), Query Frame = 3
Query:  153 MFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            MFEPNWASPPGDTISRLAAAG  S+HDLAER+G EED+FSGIMEGR+ I DEIA ALSSELGAS QFWI+RYNQFL D+AR  GS  T+ALS+WGQSFP +ALR+LGWLPKGSRG+RLS+DIL FFGC +I  W
Sbjct:    1 MFEPNWASPPGDTISRLAAAGNVSVHDLAERVGLEEDVFSGIMEGRIEIGDEIAAALSSELGASSQFWIQRYNQFLNDKARTLGSEATQALSTWGQSFPAKALRQLGWLPKGSRGQRLSKDILDFFGCDTIRDW 134          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: A0A443IJG7_9RHOB (ImmA/IrrE family metallo-endopeptidase n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A443IJG7_9RHOB)

HSP 1 Score: 225 bits (573), Expect = 8.760e-70
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 3
Query:  153 MFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            MFEPNWASPPGDTISRLAAAG  S+HDLAERIG EED+FSGIMEGRV I  EIADALS+ELGASRQFWIERYNQFL D+ R++ S   + LSSWGQSFP +ALR+LGWLPKGSRGE+LS+DIL FFGC SI  W
Sbjct:    1 MFEPNWASPPGDTISRLAAAGHVSVHDLAERIGCEEDVFSGIMEGRVAIGAEIADALSAELGASRQFWIERYNQFLHDKVRISSSGSEKTLSSWGQSFPAKALRQLGWLPKGSRGEQLSKDILDFFGCDSIRGW 134          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: C8S1P1_9RHOB (Peptidase_M78 domain-containing protein n=1 Tax=Rhodobacter sp. SW2 TaxID=371731 RepID=C8S1P1_9RHOB)

HSP 1 Score: 216 bits (549), Expect = 3.790e-66
Identity = 99/134 (73.88%), Postives = 116/134 (86.57%), Query Frame = 3
Query:  153 MFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            MFEPNWASPPGDTISRLAAA    I++LA RIGFEED+F+GIM+GRV I  EIA ALSSELGAS QFW  RYNQF+ D+AR++ SAP ++LS+WGQ+FP+RALRELGWLPKGSRGERLS+D+L FFGC SI+ W
Sbjct:    1 MFEPNWASPPGDTISRLAAAASVPIYELAARIGFEEDVFAGIMDGRVQICSEIAVALSSELGASSQFWTARYNQFVADKARISSSAPDQSLSTWGQTFPIRALRELGWLPKGSRGERLSDDVLRFFGCDSITNW 134          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: A0A2A5G9J3_9HYPH (Peptidase_M78 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A5G9J3_9HYPH)

HSP 1 Score: 215 bits (547), Expect = 7.590e-66
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 3
Query:  153 MFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            MFEPNWASPPGDTISRLAAA   S H+LAERIGFEED+F+GIMEG + I DEIA+ALS ELGAS QFWI RY+QFL D+ARL  S P   LS+WGQ+FPVR+LRELGWLPK SRGE+LSEDIL+FFGC SI  W
Sbjct:    1 MFEPNWASPPGDTISRLAAASNLSTHELAERIGFEEDVFAGIMEGSIQICDEIAEALSEELGASCQFWINRYDQFLADKARLEASLPAACLSTWGQTFPVRSLRELGWLPKRSRGEQLSEDILNFFGCDSIRDW 134          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: A0A4P6MIU2_9RHOB (Peptidase_M78 domain-containing protein n=1 Tax=Thalassococcus sp. S3 TaxID=2017482 RepID=A0A4P6MIU2_9RHOB)

HSP 1 Score: 208 bits (530), Expect = 2.730e-63
Identity = 92/134 (68.66%), Postives = 113/134 (84.33%), Query Frame = 3
Query:  153 MFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            MFEPNWASPPGDTI+R+A      IH+LAERIG EED+F+G+M+GRV I D IADALS+ELGASRQFW ERY QF+ D+ R+ GS P+++L++WG SFP +ALR+LGWLPKGSRG+RL EDIL FFGC SI++W
Sbjct:    1 MFEPNWASPPGDTIARMAVTECIPIHELAERIGLEEDVFAGVMDGRVQICDNIADALSAELGASRQFWNERYKQFIADQERITGSKPSQSLNAWGHSFPAKALRDLGWLPKGSRGDRLGEDILQFFGCDSINSW 134          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: A0A154L699_9PROT (Peptidase_M78 domain-containing protein n=1 Tax=Thalassospira lucentensis TaxID=168935 RepID=A0A154L699_9PROT)

HSP 1 Score: 200 bits (509), Expect = 3.780e-60
Identity = 93/135 (68.89%), Postives = 108/135 (80.00%), Query Frame = 3
Query:  150 LMFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            ++FEPNWASPPGDTISRLAAA   S H+LAERIGFEED+F G+MEGRV I DEIADALS  LGASRQFWI RY+QF+ DRARL       + + W   FPV++LRE GWLP GSRG++L+ DILSFFGC+SIS W
Sbjct:    1 MIFEPNWASPPGDTISRLAAASNLSTHELAERIGFEEDVFIGVMEGRVRICDEIADALSDLLGASRQFWINRYDQFVSDRARLEEPKADVSFAKWALDFPVKSLREFGWLPDGSRGDQLTSDILSFFGCQSISQW 135          
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Match: A0A165Z6B2_9HYPH (Peptidase_M78 domain-containing protein n=1 Tax=Pseudovibrio axinellae TaxID=989403 RepID=A0A165Z6B2_9HYPH)

HSP 1 Score: 128 bits (321), Expect = 2.910e-32
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 3
Query:  150 LMFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVISDEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPVRALRELGWLPKGSRGERLSEDILSFFGCKSISAW 554
            +  EP WASPPGDTI R+         +LA RIG  +D F  +MEG++ IS  +A+ALS+ LG+S +FW +RY +++ D  RL  +     L+ W + FPV +L++LGWLP     + +  +IL+FFGCK +  W
Sbjct:    1 MTLEPQWASPPGDTILRMMILADIDECELASRIGISDDKFQKLMEGQLEISASLANALSTTLGSSERFWRKRYAEYIHDNRRLELAEKKTDLAEWSKQFPVSSLKKLGWLPTHVNRKHIGSEILNFFGCKDLHDW 135          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99520.31823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R8AQM3_9RHOB4.620e-8696.27Peptidase_M78 domain-containing protein n=3 Tax=Rh... [more]
A0A4R6AC86_9RHOB1.730e-7970.76ImmA/IrrE family metallo-endopeptidase n=2 Tax=Flu... [more]
UPI001E55D1FB2.240e-7381.34ImmA/IrrE family metallo-endopeptidase n=1 Tax=Pse... [more]
UPI0019232A713.270e-7077.61ImmA/IrrE family metallo-endopeptidase n=1 Tax=Rho... [more]
A0A443IJG7_9RHOB8.760e-7078.36ImmA/IrrE family metallo-endopeptidase n=3 Tax=Rho... [more]
C8S1P1_9RHOB3.790e-6673.88Peptidase_M78 domain-containing protein n=1 Tax=Rh... [more]
A0A2A5G9J3_9HYPH7.590e-6675.37Peptidase_M78 domain-containing protein n=1 Tax=Hy... [more]
A0A4P6MIU2_9RHOB2.730e-6368.66Peptidase_M78 domain-containing protein n=1 Tax=Th... [more]
A0A154L699_9PROT3.780e-6068.89Peptidase_M78 domain-containing protein n=1 Tax=Th... [more]
A0A165Z6B2_9HYPH2.910e-3242.22Peptidase_M78 domain-containing protein n=1 Tax=Ps... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99520contigEcto-sp8_S_contig99520:1..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score214.9
Seed ortholog evalue2.3e-53
Seed eggNOG ortholog371731.Rsw2DRAFT_1969
Preferred namehigA
Model size554
KEGG koko:K18831,ko:K21498
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.plasmid maintenance system antidote protein
EggNOG OGs1QY7E@1224,2TY1Q@28211,COG3093@1,COG3093@2
Cds size402
COG Functional cat.K
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02048,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145365.091958-CDS-Ecto-sp8_S_contig99520:0..4021681145365.091958-CDS-Ecto-sp8_S_contig99520:0..402Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99520 1..402 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145365.105639-UTR-Ecto-sp8_S_contig99520:402..5541681145365.105639-UTR-Ecto-sp8_S_contig99520:402..554Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99520 403..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99520.31823.1prot_Ecto-sp8_S_contig99520.31823.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99520 1..402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99520.31823.1

>prot_Ecto-sp8_S_contig99520.31823.1 ID=prot_Ecto-sp8_S_contig99520.31823.1|Name=mRNA_Ecto-sp8_S_contig99520.31823.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=134bp
MFEPNWASPPGDTISRLAAAGKTSIHDLAERIGFEEDLFSGIMEGRVVIS
DEIADALSSELGASRQFWIERYNQFLGDRARLAGSAPTEALSSWGQSFPV
RALRELGWLPKGSRGERLSEDILSFFGCKSISAW
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mRNA from alignment at Ecto-sp8_S_contig99520:1..554-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99520.31823.1 ID=mRNA_Ecto-sp8_S_contig99520.31823.1|Name=mRNA_Ecto-sp8_S_contig99520.31823.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=554bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99520:1..554- (Ectocarpus species8 EcLAC_412)
GTCGAAGGCACGTTTGAGCTGGACTGGTTCGTTTCCACTGGCTGCACACT TAAGACGGTGATAGCTGCATCCGGCGTTGGAGACGAAGCATGGAAAGATG CTTACCGGATCCACCTGAAAGCTATCGTAATTGAAGGGGAGGTGTTTGCT TGATGTTTGAACCAAACTGGGCTTCCCCACCGGGCGACACAATCTCACGG CTGGCTGCGGCTGGAAAAACATCGATTCACGATTTGGCCGAGCGCATCGG GTTCGAAGAAGACTTGTTTTCTGGAATAATGGAAGGTCGCGTTGTGATTT CCGATGAAATCGCAGACGCCCTATCATCGGAGCTTGGTGCATCACGCCAG TTCTGGATCGAACGCTATAACCAGTTTCTGGGCGATAGAGCGCGGCTTGC AGGTTCTGCGCCAACCGAAGCGCTGTCTAGTTGGGGGCAGTCGTTTCCAG TTCGAGCCCTCCGAGAACTCGGTTGGTTGCCGAAAGGCTCTCGCGGTGAG CGTCTATCCGAGGACATCCTAAGTTTTTTCGGATGCAAAAGCATCAGCGC TTGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99520:1..554-

>mRNA_Ecto-sp8_S_contig99520.31823.1 ID=mRNA_Ecto-sp8_S_contig99520.31823.1|Name=mRNA_Ecto-sp8_S_contig99520.31823.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99520:1..554- (Ectocarpus species8 EcLAC_412)
ATGTTTGAACCAAACTGGGCTTCCCCACCGGGCGACACAATCTCACGGCT
GGCTGCGGCTGGAAAAACATCGATTCACGATTTGGCCGAGCGCATCGGGT
TCGAAGAAGACTTGTTTTCTGGAATAATGGAAGGTCGCGTTGTGATTTCC
GATGAAATCGCAGACGCCCTATCATCGGAGCTTGGTGCATCACGCCAGTT
CTGGATCGAACGCTATAACCAGTTTCTGGGCGATAGAGCGCGGCTTGCAG
GTTCTGCGCCAACCGAAGCGCTGTCTAGTTGGGGGCAGTCGTTTCCAGTT
CGAGCCCTCCGAGAACTCGGTTGGTTGCCGAAAGGCTCTCGCGGTGAGCG
TCTATCCGAGGACATCCTAAGTTTTTTCGGATGCAAAAGCATCAGCGCTT
GG
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