mRNA_Ecto-sp8_S_contig99445.31814.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99445.31814.1
Unique NamemRNA_Ecto-sp8_S_contig99445.31814.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99445.31814.1 vs. uniprot
Match: D7FT91_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT91_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 LEGVQNIRDLSSVEGYGIAAGRVFRTGHLSAATERDA 111
            LEGVQNIRDLSSVEGYGI AGRVFRTGHLSAATERDA
Sbjct:  208 LEGVQNIRDLSSVEGYGIVAGRVFRTGHLSAATERDA 244
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BLAST of mRNA_Ecto-sp8_S_contig99445.31814.1 vs. uniprot
Match: W7TPH7_9STRA (Tyrosine-protein phosphatase family, C-terminal domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPH7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.070e-9
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 LEGVQNIRDLSSVEGYGIAAGRVFRTGHLSAATERDATMLRDSTGLRTLVSI 156
            LE V+NIRDLSSV G GI AGR++RTG+LS A+E D   +R++   +TL+ +
Sbjct:  129 LERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDL 180
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BLAST of mRNA_Ecto-sp8_S_contig99445.31814.1 vs. uniprot
Match: UPI0006296945 (tyrosine-protein phosphatase n=1 Tax=Streptomyces yangpuensis TaxID=1648182 RepID=UPI0006296945)

HSP 1 Score: 48.5 bits (114), Expect = 6.060e-5
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 LEGVQNIRDLSSV---EGYGIAAGRVFRTGHLSAATERDATMLRDSTGLRTLVSIEGGVFLAL 180
            L GV+N RD+  +   +G  +AAGR+FR+GHL+ ATE DA  L  S GL T+     G   AL
Sbjct:   10 LAGVRNFRDVGGLPTSDGRRVAAGRLFRSGHLAHATETDAEFLA-SLGLHTIFDFRNGADHAL 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99445.31814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT91_ECTSI1.380e-1397.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TPH7_9STRA4.070e-953.85Tyrosine-protein phosphatase family, C-terminal do... [more]
UPI00062969456.060e-546.03tyrosine-protein phosphatase n=1 Tax=Streptomyces ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99445contigEcto-sp8_S_contig99445:350..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score72.8
Seed ortholog evalue6.7e-11
Seed eggNOG ortholog2880.D7FT91
Model size195
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Pfam:Y_phosphatase3C
EggNOG OGs2AP1J@1,2RZFS@2759
Cds size195
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145364.403855-CDS-Ecto-sp8_S_contig99445:349..5441681145364.403855-CDS-Ecto-sp8_S_contig99445:349..544Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99445 350..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99445.31814.1prot_Ecto-sp8_S_contig99445.31814.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99445 350..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99445.31814.1

>prot_Ecto-sp8_S_contig99445.31814.1 ID=prot_Ecto-sp8_S_contig99445.31814.1|Name=mRNA_Ecto-sp8_S_contig99445.31814.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=65bp
LEGVQNIRDLSSVEGYGIAAGRVFRTGHLSAATERDATMLRDSTGLRTLV
SIEGGVFLALWPVL*
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mRNA from alignment at Ecto-sp8_S_contig99445:350..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99445.31814.1 ID=mRNA_Ecto-sp8_S_contig99445.31814.1|Name=mRNA_Ecto-sp8_S_contig99445.31814.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99445:350..544- (Ectocarpus species8 EcLAC_412)
TTGGAGGGGGTGCAGAACATCAGGGACCTGAGTTCGGTGGAAGGGTACGG
TATCGCTGCGGGGCGCGTTTTTCGCACGGGACACTTGTCCGCTGCGACGG
AGAGGGACGCAACGATGCTCAGAGACAGCACCGGCTTGCGAACTCTGGTG
AGCATAGAAGGAGGTGTCTTCCTTGCCCTGTGGCCGGTTTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99445:350..544-

>mRNA_Ecto-sp8_S_contig99445.31814.1 ID=mRNA_Ecto-sp8_S_contig99445.31814.1|Name=mRNA_Ecto-sp8_S_contig99445.31814.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99445:350..544- (Ectocarpus species8 EcLAC_412)
TTGGAGGGGGTGCAGAACATCAGGGACCTGAGTTCGGTGGAAGGGTACGG
TATCGCTGCGGGGCGCGTTTTTCGCACGGGACACTTGTCCGCTGCGACGG
AGAGGGACGCAACGATGCTCAGAGACAGCACCGGCTTGCGAACTCTGGTG
AGCATAGAAGGAGGTGTCTTCCTTGCCCTGTGGCCGGTTTTGTAG
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