mRNA_Ecto-sp8_S_contig9943.31813.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9943.31813.1
Unique NamemRNA_Ecto-sp8_S_contig9943.31813.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9943.31813.1 vs. uniprot
Match: D8LEB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB2_ECTSI)

HSP 1 Score: 594 bits (1532), Expect = 1.570e-210
Identity = 357/382 (93.46%), Postives = 365/382 (95.55%), Query Frame = 2 
Query:  158 PSAPSPGLSADAAEWHPPSFLAKTVESESEKDQQPAEVGELKGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSSSPAITSDEQTAAVSPPAGXXXXXXXXXXXXXXXXXXXXPDSAQDDSTTVSDESTPVEVLTTEDVKSDSVEVVGDDEAQPDGVESDEATPAPALDDAPTAPSTSKDEGPRNVVPDAALVLDDCAGVAPDEVMATANCTTAESRTACCEKTGEPAVAGLPETATAVAATADRQCTPSNGCTVAEATAADTDAVNGSKPEVALSGATGQEGKAPGGEEGGDGTRGGKQLTDAASSDSAETSRSDPDLSCGGGKGSGLGGKFLLGDDGGCGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 1303
            PSAPSP LSADAAEWHPPSFLAKTVE+ESEKDQQPAEVGELKGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSS+PAITSDEQTAAVSPPA XXXXXXXXXXXXXXXXXXXXPDSAQ D  TVSDESTPVEVL TEDVKSDSVEVVGDDEAQPDGVESDEATPAPALDDAP+APSTS+DEGPRNVVPDAALVL+DCAGVAPDEVMATANCT A+  TACCEK  EPAVAGL ETATAVAATADRQ TPS+GCTVAEATAAD DAVNGSKPEVALSGATGQE KAPGGEEGGDGTRGGKQLTDAASSDSAETSRSDPDLS GGGKG+GL GKFLLGDDGGCGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR
Sbjct:   14 PSAPSPRLSADAAEWHPPSFLAKTVENESEKDQQPAEVGELKGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSSAPAITSDEQTAAVSPPADXXXXXXXXXXXXXXXXXXXXPDSAQGDPATVSDESTPVEVLATEDVKSDSVEVVGDDEAQPDGVESDEATPAPALDDAPSAPSTSEDEGPRNVVPDAALVLEDCAGVAPDEVMATANCTAADISTACCEKPEEPAVAGLTETATAVAATADRQGTPSDGCTVAEATAADADAVNGSKPEVALSGATGQEDKAPGGEEGGDGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKGNGLVGKFLLGDDGGCGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 395
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BLAST of mRNA_Ecto-sp8_S_contig9943.31813.1 vs. uniprot
Match: A0A6H5K876_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K876_9PHAE)

HSP 1 Score: 513 bits (1321), Expect = 1.010e-177
Identity = 341/445 (76.63%), Postives = 358/445 (80.45%), Query Frame = 2 
Query:   95 MGKKNKGXXXXXXXXXXXXXXPSAPSPGLSADAAEWHPPSFLAKTVESESEKDQQPAEVGELKGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSSSPAITSDEQTAAVSPPAGXXXXXXXXXXXXXXXXXXXX------------------------------------------PDSAQDDSTTVSDESTPVEVLTTEDVKSDSVEVVGDDEAQPDGVESDEATPAPALDDAPTAPSTSKDEGPRNVVPDAALVLDDCAGVAPDEVMATANCTTAESRTACCEKTGEPAVAGLPETATAVAATADRQCTPSNGCTVAEATAADTDAVNGSKPEVALSGATGQEGKAPGGEEGGDGTRGGKQLTDAASSDSAETSRSDPDLSCGGGKGSGLGGKFLLGDDGGCGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 1303
            MGKKNKG    XXXXXXX   PS PSP LSADAAEWHPPSFLAKT+E+ESE+DQQPAEVGEL+GESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSS+PAI SDE TAAVSPPA XXXXXXXXXXXXXXXXXXXX                                          PDSAQ DSTT SDE TP+EVLTTEDVKS SVEVVGDDEAQPDGVE DEATP PALDDAP+APSTS+D GPRNVVPDAALVL+D AGVAP EVMATA CT A+   ACCEK GEPA+AGL ET TAVA TAD Q TP++G TV EATAADTDAVNGSKPEVA SGATGQ  K PGGEEGG+GTRG +QLTDA SSDSAE SRSDPDLS GGGKG+ LGGKFLLGD+GG  GGLLDDPRWRWGSVVAVAAVVLLIGLRRR
Sbjct:    1 MGKKNKGKKKAXXXXXXXKPGPSTPSPRLSADAAEWHPPSFLAKTIENESEEDQQPAEVGELQGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSSAPAIASDEPTAAVSPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSAQGDSTTASDEPTPLEVLTTEDVKSGSVEVVGDDEAQPDGVERDEATPVPALDDAPSAPSTSEDAGPRNVVPDAALVLEDGAGVAPGEVMATAYCTAADPINACCEKAGEPALAGLSETPTAVA-TADCQGTPTDGRTVEEATAADTDAVNGSKPEVA-SGATGQHDKVPGGEEGGEGTRGSEQLTDAVSSDSAENSRSDPDLSYGGGKGNALGGKFLLGDEGGYKGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9943.31813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEB2_ECTSI1.570e-21093.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K876_9PHAE1.010e-17776.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9943contigEcto-sp8_S_contig9943:2932..7042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1347
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001590.1
Cds size1212
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145364.3232412-UTR-Ecto-sp8_S_contig9943:2931..29721681145364.3232412-UTR-Ecto-sp8_S_contig9943:2931..2972Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9943 2932..2972 -
1681145364.3654702-UTR-Ecto-sp8_S_contig9943:6948..70421681145364.3654702-UTR-Ecto-sp8_S_contig9943:6948..7042Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9943 6949..7042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145364.3410547-CDS-Ecto-sp8_S_contig9943:2972..41231681145364.3410547-CDS-Ecto-sp8_S_contig9943:2972..4123Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9943 2973..4123 -
1681145364.3526595-CDS-Ecto-sp8_S_contig9943:6887..69481681145364.3526595-CDS-Ecto-sp8_S_contig9943:6887..6948Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9943 6888..6948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9943.31813.1prot_Ecto-sp8_S_contig9943.31813.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9943 2973..6948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9943.31813.1

>prot_Ecto-sp8_S_contig9943.31813.1 ID=prot_Ecto-sp8_S_contig9943.31813.1|Name=mRNA_Ecto-sp8_S_contig9943.31813.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=404bp
MGKKNKGKKRSSERNASTKPGPSAPSPGLSADAAEWHPPSFLAKTVESES
EKDQQPAEVGELKGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGST
PAPLPSSSPAITSDEQTAAVSPPAGGSSSVPGDKQEREDGSTPAPPDSAQ
DDSTTVSDESTPVEVLTTEDVKSDSVEVVGDDEAQPDGVESDEATPAPAL
DDAPTAPSTSKDEGPRNVVPDAALVLDDCAGVAPDEVMATANCTTAESRT
ACCEKTGEPAVAGLPETATAVAATADRQCTPSNGCTVAEATAADTDAVNG
SKPEVALSGATGQEGKAPGGEEGGDGTRGGKQLTDAASSDSAETSRSDPD
LSCGGGKGSGLGGKFLLGDDGGCGGGLLDDPRWRWGSVVAVAAVVLLIGL
RRR*
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mRNA from alignment at Ecto-sp8_S_contig9943:2932..7042-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9943.31813.1 ID=mRNA_Ecto-sp8_S_contig9943.31813.1|Name=mRNA_Ecto-sp8_S_contig9943.31813.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9943:2932..7042- (Ectocarpus species8 EcLAC_412)
GTCGTCCACAGAGCAATTGACACCTGTTCAACCACTCAACCACTTATACA
ATCGTCTGCACGGGAAAGATTCCACAAGGTCGTACGTGACGACCATGGGC
AAGAAGAACAAGGGAAAGAAACGGTCGTCGGAGCGCAACGCCTCGACGAA
GCCCGGTGGGTCTCATGGTGTTGTCGGTGCTGCTCTGTTTGCGTGTCGGT
TTCCAGCGGGGAGCGGAAATATAACATGCGTCGTTGCCGTTTCAATGCAC
ACAGCAAGTAAGTGAGCTCGACCACAATCCTCCTGACCAACCCCGTACTC
CGCTAGATTTCAGAGCAGCAGATTCGTGTGCACAACTTAGGCCATACCTA
GGAGATACTTCGCTTGCCAACCGCACATCGTGTTCTCTCACTCTGGCATT
ATTTTTCTTGGTACATCTTTCTTCTCGCTCTCGGGGCTCTCCAAAACACA
ATAATGCGCCCGACCCCCCAGAGGGCAACCAAAATGCGGGGAAACACTAC
GAACACGGATGTGCATATGCGTACGTAACTCAGACCTCAGATACGAGAGC
GCCTCGAGCGTGCTACCGCACAAATCTGACCCAGCACAACAGTTTATAGA
TCACTCCAATGTTCATCTAGGGGCACCAAGATTGAGATTATCAACTCCAC
GTGCTGTAAGTTATTAATTAATGTATAGACAAGAACAACAGCAACAAACG
CGCTGTGAGGCTGTGACCATCAGCGCACAGTTCGCAAATTCGTCAAAATG
TGGTGCAGCAACAGACATGTCCTCAAGCGGATACACAAGTGCGGCGTAAC
CCTGCACCCGTGCGGAGAACTACTAATTGTAGCTCCCACCGTGGGATCAA
TCGGGGCAAGACCAAGTGTACCGCAGATACTTTACGGATTGAAGGCTCGA
GTCGAATGATGCGGTGGTGGATGTACAGAGGAAGACAGACGGATTCTGTC
CAAAACTTGCGTGAGCGTACAGGCAGCGCGCTTATGCCCCTTGCACGCCG
CCGGCAGTAGGGAAGCCTCCACGATGTTCTCCATTAGTCTCGTGGTCCCG
CAGTGTTCTGATTTGTGGTGCAACGTGAAGCGCGGGTGGGAGGTGGTAGT
ACAAGGTTACGGTTCGGGCTGAAACTGCTGTACGATATATAATGCACACA
GTAGTTTTGTGACCTTCGTCGTGTTGCACCGCGCACGTCGTCGGCCGTGC
CTGTTGTTGTGAATCGCCCCTCCGTCGCCAAGCGGCACCTCCTTCCCTGA
TTCCCTGGGAATAAAAAAAAAAACGTGAGGAAGTCGTTTTGTTGTTCAGA
CGGGAACTGCGTTTCCCAGACCTACCACTTGCGGCCGCGTTTGTCGCGTA
CAACGTGGCCGTCTTTTCTCTGGAATTGTGGAATTGTACCCTGATTTCTC
GGAAATCTATTTTGACGTGACGGGATGCATATGGGACCCTTTCGTCGCCG
AATTTCTCCGCAGGAATCACTTCCCGCTCCCACCAAAAGCCCTAATCTTG
AAATCTTCCTGCTCCCAACAAAAGTTGGCAACCGAAAACCCTAGACACAC
CCACCCCATCCATAGGTTGATTGAAAGCAGCATGGTTGAAATGCCGACCG
AAACAGAGCGTGCGCCCAGCTTGCCACGTTCCAGAAGAGTGATGGGTGGA
TGTGGCCGCAGAGAAACCGAGGAGGGGCGAACGAAGGGTCAACAGCTGTG
CTGCTTGACTTGTCCGTGGTTGCAACTGCTGTAAACGTCGATGAAGACTA
TTTGATTTTTCTCAGATCGACAGCTGCAACACAAAGAGCCGAACGTCAGA
CGGGATGCACACCAAAGAAAAGTAATTCCGGCAGCGCACAGCAATATTCT
TCGGGCATTTTGTGATACGGCAGGGTGAGAGTGGGCGTCGACCAATCAAC
TTGGCGGGTTTCACGCGGATCAACAGAGTACTTACCCAGCTGCGTCGTTT
TTTGTGTTCTACCTACACATTCCTTGTTGTCTTTACGTGTGTGTCCGGAT
AAGTAAGAAAACACCGCACAAGACCCCGGATTCCCAGATTTATGAAACGA
AGAGTCGCACCTCTTATCATACTAGGAAAAGTAGATACACACACAGAAAA
ACTACCCGTTCGACATACAAGATACATACATGCTCCGGCTCGCTGGACGC
GAGGTCACGCTGGACCAAGCACGTATGGCCGCGGGAAGAAAAATGCGAAC
CCACAAAGAGACAATAAACAAGGGGAATGGCCGCGTGCGGCGTTGATCGT
TCAATGGTCTCAGCAAATCAAGGCGCTATACCACAACAATCAAGTGACGT
CATGGTGTGAACGCTTGTACATATATGCATATATGCATAGCTAAGCCAAC
CCTGTGTTTCAACCATGCACAGCATTTTTTCTGCCACAAAGTAACACATG
CGGTCAACCCGCACGAGCTTCTAGAGGGTTTAGAGCCCCCGGTAAGAGAG
TTTTTTCTTGTCGCCCCCTGTACTAGTTTACTTTTTCCCTCTACATGCCA
GAGTTTTTTTTCTTTTCAAATCCTCTATTGGTTTGTAGAGGGCCTCAACG
CTTTTTGAAAATGCCACATTGTGAAGTTTATATCTTTGACTCTACATGGT
AGAGGGTTGGGAAGGCCACCTACAAGAAACGTTTTTGGTAATCCCGTGTT
GTATAGCCTCTAGGGAAGACCCGTTGTAAGAATCATGCCCGCATGTCTAA
CCCTGGGAGCTGCAGCTCCCCCCACATTCTATGTTGAACTACCGTGTAGA
TCCTTGTACTGAGATCCCGCGACAACGCTGACTTCGCTGGGGTTTCACCT
CGATGCCCTGCCAGCGCATGTGAACTGAAGTACCCGGGAGACCAACCTCA
TCACGCCTTGCTGCTGCCAAATCCCTCGTGCACTGCCCCCCATGCGCACC
TACTACGACGCGGCTTCAGGCCCAAGCGCACCGTCACCCGGCCTTTCGGC
TGACGCTGCGGAGTGGCACCCGCCGTCGTTTCTGGCGAAAACGGTCGAGA
GCGAGAGCGAGAAGGACCAACAACCGGCGGAAGTCGGCGAATTGAAGGGC
GAGTCACCCTCCGCGGCAGCGACGGCGGCAGAGGGTGTAGAGCAAGAGCA
TTGCCCCGGGTCGAACACGCCCCCTGGAGACGACGAGGGGCGGGAGGATG
GATCGACGCCTGCACCGCTTCCTAGTTCTTCGCCTGCAATCACATCCGAT
GAGCAAACAGCAGCCGTTTCTCCGCCGGCTGGTGGTAGTTCATCGGTTCC
TGGAGACAAACAAGAGCGGGAGGATGGATCAACGCCTGCACCACCCGACT
CCGCCCAGGATGACTCCACAACCGTCTCCGATGAGTCAACACCAGTTGAA
GTGTTGACGACCGAGGATGTCAAGAGCGATAGCGTCGAAGTTGTAGGAGA
TGACGAAGCGCAGCCAGACGGGGTGGAGAGCGATGAGGCTACGCCAGCAC
CTGCTTTGGATGATGCACCCACCGCGCCGAGCACCTCAAAAGACGAGGGT
CCCCGCAATGTCGTGCCGGATGCAGCACTTGTGCTAGACGATTGCGCCGG
CGTAGCGCCCGACGAGGTGATGGCCACGGCCAACTGCACCACCGCCGAGA
GTAGGACGGCCTGCTGCGAGAAAACCGGAGAGCCGGCTGTGGCGGGGTTA
CCGGAGACAGCTACTGCTGTCGCCGCCACCGCCGATCGCCAATGTACGCC
CTCCAATGGGTGCACGGTAGCAGAGGCAACGGCCGCGGACACTGACGCCG
TCAATGGTTCGAAGCCTGAGGTGGCGTTGTCGGGAGCAACCGGACAGGAA
GGCAAGGCGCCTGGAGGTGAGGAGGGTGGAGACGGCACCCGGGGGGGTAA
GCAGCTAACAGACGCGGCGTCCTCCGATTCCGCGGAGACCAGTAGGTCAG
ACCCCGACCTCTCGTGCGGTGGTGGCAAGGGCAGTGGCCTTGGCGGCAAG
TTCTTGTTGGGAGATGACGGCGGGTGCGGGGGGGGGCTCTTGGACGACCC
GAGGTGGAGGTGGGGCAGCGTCGTGGCGGTGGCCGCGGTGGTGCTGCTGA
TTGGCCTGCGTCGTCGATGAAGAAGCAGGCAGGGGGCAGCCCAGCGTCAA
AGTGGTGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9943:2932..7042-

>mRNA_Ecto-sp8_S_contig9943.31813.1 ID=mRNA_Ecto-sp8_S_contig9943.31813.1|Name=mRNA_Ecto-sp8_S_contig9943.31813.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9943:2932..7042- (Ectocarpus species8 EcLAC_412)
ATGGGCAAGAAGAACAAGGGAAAGAAACGGTCGTCGGAGCGCAACGCCTC
GACGAAGCCCGGCCCAAGCGCACCGTCACCCGGCCTTTCGGCTGACGCTG
CGGAGTGGCACCCGCCGTCGTTTCTGGCGAAAACGGTCGAGAGCGAGAGC
GAGAAGGACCAACAACCGGCGGAAGTCGGCGAATTGAAGGGCGAGTCACC
CTCCGCGGCAGCGACGGCGGCAGAGGGTGTAGAGCAAGAGCATTGCCCCG
GGTCGAACACGCCCCCTGGAGACGACGAGGGGCGGGAGGATGGATCGACG
CCTGCACCGCTTCCTAGTTCTTCGCCTGCAATCACATCCGATGAGCAAAC
AGCAGCCGTTTCTCCGCCGGCTGGTGGTAGTTCATCGGTTCCTGGAGACA
AACAAGAGCGGGAGGATGGATCAACGCCTGCACCACCCGACTCCGCCCAG
GATGACTCCACAACCGTCTCCGATGAGTCAACACCAGTTGAAGTGTTGAC
GACCGAGGATGTCAAGAGCGATAGCGTCGAAGTTGTAGGAGATGACGAAG
CGCAGCCAGACGGGGTGGAGAGCGATGAGGCTACGCCAGCACCTGCTTTG
GATGATGCACCCACCGCGCCGAGCACCTCAAAAGACGAGGGTCCCCGCAA
TGTCGTGCCGGATGCAGCACTTGTGCTAGACGATTGCGCCGGCGTAGCGC
CCGACGAGGTGATGGCCACGGCCAACTGCACCACCGCCGAGAGTAGGACG
GCCTGCTGCGAGAAAACCGGAGAGCCGGCTGTGGCGGGGTTACCGGAGAC
AGCTACTGCTGTCGCCGCCACCGCCGATCGCCAATGTACGCCCTCCAATG
GGTGCACGGTAGCAGAGGCAACGGCCGCGGACACTGACGCCGTCAATGGT
TCGAAGCCTGAGGTGGCGTTGTCGGGAGCAACCGGACAGGAAGGCAAGGC
GCCTGGAGGTGAGGAGGGTGGAGACGGCACCCGGGGGGGTAAGCAGCTAA
CAGACGCGGCGTCCTCCGATTCCGCGGAGACCAGTAGGTCAGACCCCGAC
CTCTCGTGCGGTGGTGGCAAGGGCAGTGGCCTTGGCGGCAAGTTCTTGTT
GGGAGATGACGGCGGGTGCGGGGGGGGGCTCTTGGACGACCCGAGGTGGA
GGTGGGGCAGCGTCGTGGCGGTGGCCGCGGTGGTGCTGCTGATTGGCCTG
CGTCGTCGATGA
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