mRNA_Ecto-sp8_S_contig99184.31775.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99184.31775.1
Unique NamemRNA_Ecto-sp8_S_contig99184.31775.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99184.31775.1 vs. uniprot
Match: UPI000C78429F (uncharacterized protein LOC111713139 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78429F)

HSP 1 Score: 129 bits (324), Expect = 2.780e-31
Identity = 68/203 (33.50%), Postives = 119/203 (58.62%), Query Frame = 1 
Query:    1 YNACMEEKKSPKYRSSRSYPLTDACFYTAEDLYTLRKFKTDVTTNNIPRWLVKLFRKMEVIMKSKLWAYWKVDLKKQIS-SIDY-------DNYSPWVRTDLVFEPQTGTVDLMWMTNMETSEFKGMKYMEMFRYGNSVEDYLPSSKFSPAMKLLHS------------HDLVNYCTVSNDQVRTCANMTYGYQMNDCWTMVS 549
            Y+ CM++K+SP++++S S+P+TDACFYTA DLYT+R +K   T  ++  W++  +RK+E ++K+ L+ +W++ L  +++   D+       D+YSP V     F  +  T D+   TN + +EFKG+ Y     +  +VE Y+   + +P+   L +            ++L+  C+ +   +RT  N+TY Y M++CWTMVS
Sbjct: 1264 YHTCMQQKESPEWKAS-SFPVTDACFYTAIDLYTIRDYKWTATFQSLEPWMITGYRKLETLVKTGLFPFWQIKLDNKLARQTDFPYSTNMIDSYSPVVVITQKFHSEQNTFDMTIQTNRDLNEFKGVHYGY---WDWNVEPYMTFQESTPSFTSLRNTHLSSLRMKMAANNLIGMCSANTKSIRTFDNVTYSYDMHNCWTMVS 1462
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99184.31775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000C78429F2.780e-3133.50uncharacterized protein LOC111713139 n=1 Tax=Euryt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99184contigEcto-sp8_S_contig99184:2..556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size555
Hectar predicted targeting categoryother localisation
Exons1
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145360.8728275-UTR-Ecto-sp8_S_contig99184:1..131681145360.8728275-UTR-Ecto-sp8_S_contig99184:1..13Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99184 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145360.884886-CDS-Ecto-sp8_S_contig99184:13..5561681145360.884886-CDS-Ecto-sp8_S_contig99184:13..556Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99184 14..556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99184.31775.1prot_Ecto-sp8_S_contig99184.31775.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99184 14..556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99184.31775.1

>prot_Ecto-sp8_S_contig99184.31775.1 ID=prot_Ecto-sp8_S_contig99184.31775.1|Name=mRNA_Ecto-sp8_S_contig99184.31775.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=181bp
MEEKKSPKYRSSRSYPLTDACFYTAEDLYTLRKFKTDVTTNNIPRWLVKL
FRKMEVIMKSKLWAYWKVDLKKQISSIDYDNYSPWVRTDLVFEPQTGTVD
LMWMTNMETSEFKGMKYMEMFRYGNSVEDYLPSSKFSPAMKLLHSHDLVN
YCTVSNDQVRTCANMTYGYQMNDCWTMVSTD
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mRNA from alignment at Ecto-sp8_S_contig99184:2..556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99184.31775.1 ID=mRNA_Ecto-sp8_S_contig99184.31775.1|Name=mRNA_Ecto-sp8_S_contig99184.31775.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=555bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99184:2..556+ (Ectocarpus species8 EcLAC_412)
TACAATGCTTGCATGGAGGAAAAGAAATCTCCAAAGTATCGAAGCAGCCG
CAGTTATCCACTGACTGACGCTTGCTTTTACACAGCAGAGGACTTGTACA
CATTGAGGAAGTTCAAGACAGATGTGACAACCAACAATATCCCCAGGTGG
CTGGTCAAGCTGTTTAGAAAAATGGAGGTCATCATGAAGAGCAAACTATG
GGCTTACTGGAAGGTTGATCTGAAGAAGCAAATTTCTTCGATTGACTACG
ATAACTACAGTCCCTGGGTTAGGACTGATCTTGTCTTTGAGCCTCAGACA
GGAACAGTGGATCTGATGTGGATGACAAATATGGAAACTTCTGAGTTTAA
AGGAATGAAATACATGGAAATGTTCAGATATGGAAATTCAGTGGAAGACT
ACTTACCCAGCAGTAAGTTTTCCCCAGCAATGAAATTACTCCATTCTCAC
GACTTGGTGAACTACTGCACGGTGTCCAATGACCAAGTCCGGACCTGCGC
CAATATGACCTATGGCTATCAGATGAACGACTGCTGGACTATGGTCTCTA
CAGAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99184:2..556+

>mRNA_Ecto-sp8_S_contig99184.31775.1 ID=mRNA_Ecto-sp8_S_contig99184.31775.1|Name=mRNA_Ecto-sp8_S_contig99184.31775.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99184:2..556+ (Ectocarpus species8 EcLAC_412)
ATGGAGGAAAAGAAATCTCCAAAGTATCGAAGCAGCCGCAGTTATCCACT
GACTGACGCTTGCTTTTACACAGCAGAGGACTTGTACACATTGAGGAAGT
TCAAGACAGATGTGACAACCAACAATATCCCCAGGTGGCTGGTCAAGCTG
TTTAGAAAAATGGAGGTCATCATGAAGAGCAAACTATGGGCTTACTGGAA
GGTTGATCTGAAGAAGCAAATTTCTTCGATTGACTACGATAACTACAGTC
CCTGGGTTAGGACTGATCTTGTCTTTGAGCCTCAGACAGGAACAGTGGAT
CTGATGTGGATGACAAATATGGAAACTTCTGAGTTTAAAGGAATGAAATA
CATGGAAATGTTCAGATATGGAAATTCAGTGGAAGACTACTTACCCAGCA
GTAAGTTTTCCCCAGCAATGAAATTACTCCATTCTCACGACTTGGTGAAC
TACTGCACGGTGTCCAATGACCAAGTCCGGACCTGCGCCAATATGACCTA
TGGCTATCAGATGAACGACTGCTGGACTATGGTCTCTACAGAT
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