mRNA_Ecto-sp8_S_contig99154.31772.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99154.31772.1
Unique NamemRNA_Ecto-sp8_S_contig99154.31772.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99154.31772.1 vs. uniprot
Match: D8LPY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY8_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.040e-31
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 LRLQVQECQNLRSADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVFSAAGSTFRLPL 174
            LRLQVQECQNLRSADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVFSAAGSTFRLPL
Sbjct: 3313 LRLQVQECQNLRSADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVFSAAGSTFRLPL 3370
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BLAST of mRNA_Ecto-sp8_S_contig99154.31772.1 vs. uniprot
Match: A0A6H5KLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 8.790e-28
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 LRLQVQECQNLRSADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVFSAAGSTFRLPL 174
            LRLQV ECQNLR ADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVFSAA STF+LPL
Sbjct: 3504 LRLQVLECQNLRGADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVFSAAMSTFQLPL 3561
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99154.31772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPY8_ECTSI5.040e-31100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLV8_9PHAE8.790e-2893.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99154contigEcto-sp8_S_contig99154:366..539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score123.2
Seed ortholog evalue3.9e-26
Seed eggNOG ortholog2880.D8LPY8
Model size174
KEGG koko:K16280
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.negative regulation of response to water deprivation
EggNOG OGsKOG1327@1,KOG1327@2759
EC2.3.2.27
Cds size174
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145360.6470962-CDS-Ecto-sp8_S_contig99154:365..5391681145360.6470962-CDS-Ecto-sp8_S_contig99154:365..539Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99154 366..539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99154.31772.1prot_Ecto-sp8_S_contig99154.31772.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99154 366..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99154.31772.1

>prot_Ecto-sp8_S_contig99154.31772.1 ID=prot_Ecto-sp8_S_contig99154.31772.1|Name=mRNA_Ecto-sp8_S_contig99154.31772.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
LRLQVQECQNLRSADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVFSAA
GSTFRLPL
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mRNA from alignment at Ecto-sp8_S_contig99154:366..539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99154.31772.1 ID=mRNA_Ecto-sp8_S_contig99154.31772.1|Name=mRNA_Ecto-sp8_S_contig99154.31772.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99154:366..539+ (Ectocarpus species8 EcLAC_412)
CTCAGGCTCCAAGTGCAAGAGTGCCAGAACTTGAGGAGTGCGGACATGCT
CGGCAAGAGCGATCCTTGCGTTCTGGTGTTCTGGAACGGGGTGGAGGTTG
GCCGCACGCCGATCGCTCGCGACGATCTACATCCCGTGTTTTCGGCCGCC
GGGAGTACGTTCCGACTCCCCCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99154:366..539+

>mRNA_Ecto-sp8_S_contig99154.31772.1 ID=mRNA_Ecto-sp8_S_contig99154.31772.1|Name=mRNA_Ecto-sp8_S_contig99154.31772.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99154:366..539+ (Ectocarpus species8 EcLAC_412)
CTCAGGCTCCAAGTGCAAGAGTGCCAGAACTTGAGGAGTGCGGACATGCT
CGGCAAGAGCGATCCTTGCGTTCTGGTGTTCTGGAACGGGGTGGAGGTTG
GCCGCACGCCGATCGCTCGCGACGATCTACATCCCGTGTTTTCGGCCGCC
GGGAGTACGTTCCGACTCCCCCTG
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