mRNA_Ecto-sp8_S_contig9910.31761.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9910.31761.1
Unique NamemRNA_Ecto-sp8_S_contig9910.31761.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9910.31761.1 vs. uniprot
Match: D8LFZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFZ8_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 3.390e-62
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 1 
Query:    1 MQGARRTLLVPHCGSVQCGPAVVSNRLVLLPPQQQQCPLSDPVGILQPRQKARGAPIMSICAVERSCVAGSFCSDTNLGGGSYRLLRPVASSAADEEPSLRPRSS--GRSAGSTC 339
            MQ ARRTLLVPHCGSVQCGPAVVS RL+ LPPQQQQCPL++PVGILQPRQKARGAP+MSICAVERSCVAGSFCSDTNLGGGSYRLLRPVASSAAD EPSLRPRSS  G   G  C
Sbjct:    1 MQDARRTLLVPHCGSVQCGPAVVSIRLLFLPPQQQQCPLTEPVGILQPRQKARGAPMMSICAVERSCVAGSFCSDTNLGGGSYRLLRPVASSAADGEPSLRPRSSAGGARVGERC 115
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9910.31761.1 vs. uniprot
Match: D8LFZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFZ7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.640e-17
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  169 IMSICAVERSCVAGSFCSDTNLG-GGSYRLLRPVASSAADEEPSLRPRSS--GRSAGSTC 339
            +M IC+  RSCVAGSFCSDT+ G G SYRLLRPVASSAADEEPSLRPRSS  G   G  C
Sbjct:    1 MMRICSAVRSCVAGSFCSDTSFGDGSSYRLLRPVASSAADEEPSLRPRSSAGGARVGECC 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9910.31761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFZ8_ECTSI3.390e-6286.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFZ7_ECTSI3.640e-1773.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9910contigEcto-sp8_S_contig9910:1..2066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size528
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_005140.1
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.921504-CDS-Ecto-sp8_S_contig9910:0..2121681145359.921504-CDS-Ecto-sp8_S_contig9910:0..212Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9910 1..212 -
1681145359.9342716-CDS-Ecto-sp8_S_contig9910:712..8681681145359.9342716-CDS-Ecto-sp8_S_contig9910:712..868Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9910 713..868 -
1681145359.9514177-CDS-Ecto-sp8_S_contig9910:1906..20661681145359.9514177-CDS-Ecto-sp8_S_contig9910:1906..2066Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9910 1907..2066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9910.31761.1prot_Ecto-sp8_S_contig9910.31761.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9910 1..2066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9910.31761.1

>prot_Ecto-sp8_S_contig9910.31761.1 ID=prot_Ecto-sp8_S_contig9910.31761.1|Name=mRNA_Ecto-sp8_S_contig9910.31761.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=176bp
MQGARRTLLVPHCGSVQCGPAVVSNRLVLLPPQQQQCPLSDPVGILQPRQ
KARGAPIMSICAVERSCVAGSFCSDTNLGGGSYRLLRPVASSAADEEPSL
RPRSSGRSAGSTCLCVLEAVLSTIVFMSIMGKARNGNIGGDGVLLLPLVI
GCTAFAVWVGASHSLCTLRVQRAVDK
back to top

mRNA from alignment at Ecto-sp8_S_contig9910:1..2066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9910.31761.1 ID=mRNA_Ecto-sp8_S_contig9910.31761.1|Name=mRNA_Ecto-sp8_S_contig9910.31761.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2066bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9910:1..2066- (Ectocarpus species8 EcLAC_412)
ATGCAGGGTGCACGCAGGACTCTGTTGGTTCCTCATTGTGGTAGTGTACA
GTGTGGGCCAGCGGTCGTCTCAAATCGTCTCGTTCTCCTGCCTCCACAGC
AACAGCAGTGTCCTCTCTCAGATCCCGTTGGAATCCTGCAACCAAGGCAA
AAGGCCAGGGGTGAGTGATCCCGCAATCCTGAAGACAGTAGGTGTGAGAA
ACGTGAGAGAGACAAGATGGTCTAGCGGGGTTGCTCATAAAACCAGAGCT
CTGGGCATTCATGTCGAACTCGGGTCAAAAACGATCGATTGATAACTACA
GCAGTAGCAGCTTCTTCCCTCTGTGGCCTGCCAAGATCCGCCAGAGTGTG
GCAGGCAGGGTGTAGACTACTGCTGTAGACCTGCAGTGATTGCAAGATCG
GGGTGACTCCTGACGGACCGACTTTGGCAGCAGCAACGAACGGTTGAAAT
ATTACATAGACTTCGCGGTAGTACCCACCGCCGGCTGGGACACCGGACAC
CGGGGCTGAACAGCAGCGGAGACCGCACTGGGACTATGTAGCCCACGGGT
GGGAATGGAGGGGCTGCACACCCAATGGGTATATGCACAAACCAAGCGAA
CTAAGTGGGGTCGGACGAAAAGTAGGATGGTTGGACCTACCGGTGATTGT
GCAAGGCAACCACCCTGGGCTAGCTTACACGCAGTAGTCTAGCCTGTGAT
ACCCTTTGGGGGGGCATCTTGTGCCCACAAAAGGTCTTGAATCAGTTGGA
CCAACCAGCCGAACAGAACGATGTGTATCCTTGCCGAACAGATAATAATA
ATAATAAATAATAAATAAATAGGCGGAGATGACGGGCGTTATTCTCAAGA
ATGTTGGTGGCAGAAATAGCAGCTGTTCTACCTCCCCAACAAGGAGTTGT
CTATGCCATGAGTGGCGGCGTCAAGTAAGTGTCCTTGACCCTACGATACT
AAACTAGCCGAATTAATCGAGCTACCCCTGCTCTCCCGCTTTGGCATCGT
CAGGACACGCTCGACGTGTGTTTCCCTCATGAATAAATGCGGAGACCATG
AGTGGTATCAGTGTTTTGCTTTGCTGCTCCAGCGGAACATTTAGCTCCGG
TTGTGCATGTTGTACGCTGCCGTTTTTCTTTTGGCGACCACAAGCAACAA
ACTGCCCTTTTGTCGTTTCGTTGTTGCCGTGCGTACATCACCACGTAGGC
GCCCCTATAATGTCGATCTGCGCGGTCGAGCGGTCCTGCGTGGCTGGAAG
CTTCTGCAGCGATACGAACCTTGGAGGTGGGTCATATCGACTTCTTCGGC
CTGTGGCGAGCTCGGCTGCGGACGAAGAACCTTCTCTCAGACCCCGGTCC
TCAGGTTAGACGGCGGCGTATGTTAGACGTGTAGTCTACGTACGAGCGCT
TGATGTAATCGTTTGATGTAGATGAAGCTTGTATCAGCGGAAGCCTCTCT
GCTACAGTGCCCCAATAAGGAATCAAGAAAGGCTTACACAAGTTAGGGAT
TCAATCGATGGCCACAACCACGGCCACAGCTGCAGCCACGGCCATCGTCT
GTCAGGAAGTGTTGCGAGAAAACACACTGGGGAATTAACCCAAACGACAC
CGTTGGGTTCTTCGCAGCTGGCGGTGCTAGGGTTGGTGAGTGGTGTGACA
TCCACCATCGGTGCGAGGCAGAATATCGCGTGGCTCACCGGGGCATCGAT
GCTTGAGAGACCTGATACCCCAAAGCGCTACCGTGGTTGAGGCGGGAATA
TGCATCATCTGACCACGACAGTCGCCCGGACGCAGCAAAACCACAAGAAG
AGTTGTTCATCACTGAACAAGCGATGTCTATACTTGCTATTTTGTCTTTC
GCAGGCCGAAGCGCTGGAAGCACGTGTTTGTGCGTTTTGGAGGCAGTTCT
GTCGACAATCGTCTTCATGTCCATCATGGGGAAGGCTCGCAATGGCAACA
TCGGGGGCGATGGGGTCCTTCTGCTGCCTCTCGTGATTGGTTGTACTGCT
TTTGCTGTATGGGTCGGAGCGTCTCACTCCCTTTGCACGCTGAGAGTACA
ACGAGCCGTGGACAAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9910:1..2066-

>mRNA_Ecto-sp8_S_contig9910.31761.1 ID=mRNA_Ecto-sp8_S_contig9910.31761.1|Name=mRNA_Ecto-sp8_S_contig9910.31761.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9910:1..2066- (Ectocarpus species8 EcLAC_412)
ATGCAGGGTGCACGCAGGACTCTGTTGGTTCCTCATTGTGGTAGTGTACA
GTGTGGGCCAGCGGTCGTCTCAAATCGTCTCGTTCTCCTGCCTCCACAGC
AACAGCAGTGTCCTCTCTCAGATCCCGTTGGAATCCTGCAACCAAGGCAA
AAGGCCAGGGGCGCCCCTATAATGTCGATCTGCGCGGTCGAGCGGTCCTG
CGTGGCTGGAAGCTTCTGCAGCGATACGAACCTTGGAGGTGGGTCATATC
GACTTCTTCGGCCTGTGGCGAGCTCGGCTGCGGACGAAGAACCTTCTCTC
AGACCCCGGTCCTCAGGCCGAAGCGCTGGAAGCACGTGTTTGTGCGTTTT
GGAGGCAGTTCTGTCGACAATCGTCTTCATGTCCATCATGGGGAAGGCTC
GCAATGGCAACATCGGGGGCGATGGGGTCCTTCTGCTGCCTCTCGTGATT
GGTTGTACTGCTTTTGCTGTATGGGTCGGAGCGTCTCACTCCCTTTGCAC
GCTGAGAGTACAACGAGCCGTGGACAAA
back to top