mRNA_Ecto-sp8_S_contig99086.31757.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99086.31757.1
Unique NamemRNA_Ecto-sp8_S_contig99086.31757.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99086.31757.1 vs. uniprot
Match: D7FXQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ0_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.970e-19
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    4 NSEFPQSAIMWTLTALVLSAWTGRDTVVDIMGLMFVTVPFKAFVE 138
             SEFP+SAIMWTLTALVLSA TGR TVVDIMGLMFVTVPFKAFVE
Sbjct:   37 TSEFPRSAIMWTLTALVLSARTGRYTVVDIMGLMFVTVPFKAFVE 81
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BLAST of mRNA_Ecto-sp8_S_contig99086.31757.1 vs. uniprot
Match: D7FU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU49_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.120e-11
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 NSEFPQSAIMWTLTALVLSAWTGRDTVVDIMGLMFVTVPFKAFVE 138
             SEFP + I+ TLTAL+LSA TG+D VVDI+ +MFVTVPF+AFVE
Sbjct:   43 TSEFPWAVIIGTLTALILSALTGQDAVVDILAVMFVTVPFQAFVE 87
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BLAST of mRNA_Ecto-sp8_S_contig99086.31757.1 vs. uniprot
Match: D7G509_ECTSI (Uncharacterized protein n=5 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G509_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.430e-11
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 NSEFPQSAIMWTLTALVLSAWTGRDTVVDIMGLMFVTVPFKAFVE 138
             SEFP ++I+WTL AL+LSA++GRD V+DIM LMF T+PF +FV+
Sbjct:   15 TSEFPWASIIWTLIALILSAFSGRDIVIDIMALMFTTMPFDSFVK 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99086.31757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXQ0_ECTSI4.970e-1991.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU49_ECTSI4.120e-1168.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G509_ECTSI5.430e-1162.22Uncharacterized protein n=5 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99086contigEcto-sp8_S_contig99086:1..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size138
Hectar predicted targeting categorysignal peptide
Exons2
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.5783098-CDS-Ecto-sp8_S_contig99086:0..421681145359.5783098-CDS-Ecto-sp8_S_contig99086:0..42Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99086 1..42 -
1681145359.5961893-CDS-Ecto-sp8_S_contig99086:450..5461681145359.5961893-CDS-Ecto-sp8_S_contig99086:450..546Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99086 451..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99086.31757.1prot_Ecto-sp8_S_contig99086.31757.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99086 1..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99086.31757.1

>prot_Ecto-sp8_S_contig99086.31757.1 ID=prot_Ecto-sp8_S_contig99086.31757.1|Name=mRNA_Ecto-sp8_S_contig99086.31757.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=46bp
MNSEFPQSAIMWTLTALVLSAWTGRDTVVDIMGLMFVTVPFKAFVE
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mRNA from alignment at Ecto-sp8_S_contig99086:1..546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99086.31757.1 ID=mRNA_Ecto-sp8_S_contig99086.31757.1|Name=mRNA_Ecto-sp8_S_contig99086.31757.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=546bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99086:1..546- (Ectocarpus species8 EcLAC_412)
ATGAACAGCGAGTTCCCGCAGTCGGCAATCATGTGGACGCTGACAGCGTT
GGTACTATCGGCGTGGACGGGAAGAGATACCGTCGTGGACATTATGGTGA
GGCCAGGCTTGGTGGCGCCGGGAACTAAACGATTTTTCCTGTCTCTTTTC
GTTTTCTTCCATCCTTCGTTGACCAACGAGTCGTGCAGTAGCAAGTGGTG
CAGTTAACCTAAACCAAGCGCCGCGATTACTTTGTCTTCCTGAGACAACA
AAACAGCGCCCGAAACGCTGGTCTGGAGTCAATTCTCCAATACATGGGTG
TTAAAGCGGTGTCTGTCTAAAAAACGATAGAGGATGTTGTTGTTTATTTA
TTGCAAGTTGTGTTTGGCGAACCTATCCTAGGATTGAACGGAACCTGGTT
TGTTAATCTCGCACGATTGAGGGTTCTCGACCGAAGCTAACCTTTCCCTT
CTGTGTCCATCGCACCGCGCACCGCACCGCGGCCGCACGGCATGTCAACC
ACAGGGCTTAATGTTCGTCACGGTGCCCTTCAAAGCATTCGTCGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99086:1..546-

>mRNA_Ecto-sp8_S_contig99086.31757.1 ID=mRNA_Ecto-sp8_S_contig99086.31757.1|Name=mRNA_Ecto-sp8_S_contig99086.31757.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99086:1..546- (Ectocarpus species8 EcLAC_412)
ATGAACAGCGAGTTCCCGCAGTCGGCAATCATGTGGACGCTGACAGCGTT
GGTACTATCGGCGTGGACGGGAAGAGATACCGTCGTGGACATTATGGGCT
TAATGTTCGTCACGGTGCCCTTCAAAGCATTCGTCGAG
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