mRNA_Ecto-sp8_S_contig99072.31754.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99072.31754.1
Unique NamemRNA_Ecto-sp8_S_contig99072.31754.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99072.31754.1 vs. uniprot
Match: D8LSD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD2_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 4.700e-77
Identity = 126/130 (96.92%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:    1 MKKPCCILTLLALFCQSPQAFVPISSRQPRARLASAGSHRLSREARASPLSSCNIEGGGGRTAVPPTRRRNRGRGGMGKSRTATGGVRELRAGFDLPGLGALLEQSTRHHIPSAFTGGTVGVLGTLSAIQ 390
            MKKPCCILTLLALFCQSPQAFVPISS QPRARLASAGSHRLSREARASPLSSCNIEG GGRTAV PTRRRNRGRGG GKSRTATGGVRELRAGFDLPGLGALLEQSTRHHIPSAFTGGTVGVLGTLSAIQ
Sbjct:    1 MKKPCCILTLLALFCQSPQAFVPISSSQPRARLASAGSHRLSREARASPLSSCNIEGRGGRTAVQPTRRRNRGRGGTGKSRTATGGVRELRAGFDLPGLGALLEQSTRHHIPSAFTGGTVGVLGTLSAIQ 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99072.31754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSD2_ECTSI4.700e-7796.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99072contigEcto-sp8_S_contig99072:7..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size393
Hectar predicted targeting categorychloroplast
Exons1
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-21_003250.1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.403556-CDS-Ecto-sp8_S_contig99072:6..3991681145359.403556-CDS-Ecto-sp8_S_contig99072:6..399Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99072 7..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99072.31754.1prot_Ecto-sp8_S_contig99072.31754.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99072 7..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99072.31754.1

>prot_Ecto-sp8_S_contig99072.31754.1 ID=prot_Ecto-sp8_S_contig99072.31754.1|Name=mRNA_Ecto-sp8_S_contig99072.31754.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=131bp
MKKPCCILTLLALFCQSPQAFVPISSRQPRARLASAGSHRLSREARASPL
SSCNIEGGGGRTAVPPTRRRNRGRGGMGKSRTATGGVRELRAGFDLPGLG
ALLEQSTRHHIPSAFTGGTVGVLGTLSAIQV
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mRNA from alignment at Ecto-sp8_S_contig99072:7..399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99072.31754.1 ID=mRNA_Ecto-sp8_S_contig99072.31754.1|Name=mRNA_Ecto-sp8_S_contig99072.31754.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99072:7..399+ (Ectocarpus species8 EcLAC_412)
ATGAAGAAACCGTGCTGCATCCTCACGCTGCTGGCCTTGTTCTGCCAGAG
CCCGCAGGCTTTTGTCCCCATCAGCTCTAGGCAGCCCCGCGCAAGACTCG
CATCGGCGGGATCCCACCGCCTCTCGCGAGAAGCCCGGGCATCACCCCTG
TCATCATGTAACATCGAGGGCGGCGGAGGGAGAACAGCCGTACCACCGAC
GAGGCGGCGAAATCGAGGAAGGGGGGGCATGGGTAAGAGCAGGACAGCCA
CCGGTGGCGTCCGCGAGTTGAGGGCCGGGTTCGACCTGCCCGGGTTGGGG
GCCTTGCTGGAGCAGAGCACGCGGCACCACATCCCTTCAGCCTTCACCGG
GGGAACTGTGGGCGTCCTCGGCACGCTGTCGGCGATTCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99072:7..399+

>mRNA_Ecto-sp8_S_contig99072.31754.1 ID=mRNA_Ecto-sp8_S_contig99072.31754.1|Name=mRNA_Ecto-sp8_S_contig99072.31754.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99072:7..399+ (Ectocarpus species8 EcLAC_412)
ATGAAGAAACCGTGCTGCATCCTCACGCTGCTGGCCTTGTTCTGCCAGAG
CCCGCAGGCTTTTGTCCCCATCAGCTCTAGGCAGCCCCGCGCAAGACTCG
CATCGGCGGGATCCCACCGCCTCTCGCGAGAAGCCCGGGCATCACCCCTG
TCATCATGTAACATCGAGGGCGGCGGAGGGAGAACAGCCGTACCACCGAC
GAGGCGGCGAAATCGAGGAAGGGGGGGCATGGGTAAGAGCAGGACAGCCA
CCGGTGGCGTCCGCGAGTTGAGGGCCGGGTTCGACCTGCCCGGGTTGGGG
GCCTTGCTGGAGCAGAGCACGCGGCACCACATCCCTTCAGCCTTCACCGG
GGGAACTGTGGGCGTCCTCGGCACGCTGTCGGCGATTCAGGTG
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