mRNA_Ecto-sp8_S_contig98986.31736.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98986.31736.1
Unique NamemRNA_Ecto-sp8_S_contig98986.31736.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 2.370e-52
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 1
Query:    1 VSFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLKENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG 303
            VSFIGNAAEVAGGAVFVSGTGFGP+FTGARFISNSAQVGGAVS+VGSGNLKENA+ISPPNPTTFD C FIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG
Sbjct:  590 VSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG 690          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.580e-32
Identity = 70/101 (69.31%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    1 VSFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLKENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG 303
            V F  NAA VAGGAVFVSG G GP F    F SNSAQVGGAV+  GSGN K  A+I PPNPTTF+RC F+ NRATATGGAIDSAAG D FV++TF+ N AG
Sbjct:  944 VRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAG 1044          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 5.740e-30
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    1 VSFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLKENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG 303
            +SFI N A V+GGAVFVS  G G  F    F+SNSAQ+GGAV++ GSG  K   +I PPNPTTFDRC+F+ NRATATGGAID+AAG D FV++TF+ N AG
Sbjct:  753 ISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAG 853          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 8.200e-28
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    7 FIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLKENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG 303
            F+GN A VAGGA+FVSGT  GP F     +SNSAQVGGA+S +GSG    N     P PTTF++C+F  NRA ATGGA+D+AAGQD FVNS F+GN AG
Sbjct:  313 FVGNTAAVAGGAIFVSGTAVGPTFVNISLVSNSAQVGGAISLIGSG-TSFNPEDYTPAPTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAG 410          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 8.300e-28
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 VSFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLKENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRA 300
            VSF GN+A  AGGAVFVSG G GP F+   FISN AQVGGA S  GSGN  +   +SP  PT FDRC+FIDN AT +GGA+DSAAGQD  VNS F+GN A
Sbjct:  761 VSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGN--DRGMLSPIIPTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSA 858          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.140e-27
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1
Query:    1 VSFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLKENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTF 285
            V F  N A VAGGAVFVSG   GPV +   F +N AQVGGAVS+VGSGNLKE A ++PPNPT F RC+F++N+A ATGGA+++AAGQD FV+  F
Sbjct: 1399 VVFSNNTAAVAGGAVFVSGADVGPVLSDVLFEANVAQVGGAVSTVGSGNLKEYAGLAPPNPTIFTRCRFVNNQAAATGGAVETAAGQDVFVDCLF 1493          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.690e-26
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    4 SFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLK--ENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRA 300
            SF+ N+A +AGGAV+VS T  GP F+   F SNSAQVGGAVSS+GSGN+K  EN  + P   TTF RC+F  NRATATGGA+DSA+GQD F ++ F+GN+A
Sbjct:  355 SFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLLP---TTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQA 452          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.060e-25
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 VSFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLKENANISPP---NPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG 303
            +SF+GN+A VAGGA+F+SG   GP+FT   F SN A++GGAVS  G G       I P    NPTTFDRC+F+DN+  +TGGAI+SAAG+DAF  S F+GN AG
Sbjct:  957 ISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSLFGCG-------IEPSGGDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAG 1053          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.090e-25
Identity = 60/101 (59.41%), Postives = 78/101 (77.23%), Query Frame = 1
Query:    4 SFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLK--ENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRA 300
            +F+ N+A++AGGAV+VS T  GP F+   F SNSAQVGGAVS++GSGN+K  EN  + P   TTF RC+F  NRATATGGA+DSA+GQD F ++ F+GN+A
Sbjct: 2268 NFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQLLP---TTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQA 2365          
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.670e-25
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 VSFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNLKENANISPP---NPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG 303
            +SF+GN+A VAGGA+F+SG   GP+FT   F SN A++GGAVSS   G       I P    NPTTFDRC+F+DN+  +TGGAI+SAAG+DAF  S F+GN AG
Sbjct:  683 ISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCG-------IEPSGVDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAG 779          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98986.31736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G301_ECTSI2.370e-5295.05Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI1.580e-3269.31Polymorphic Outer membrane protein G/I family n=3 ... [more]
D8LIY0_ECTSI5.740e-3063.37Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G2Z8_ECTSI8.200e-2861.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2X5_ECTSI8.300e-2865.00Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G5Y7_ECTSI1.140e-2763.16Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FHH1_ECTSI8.690e-2661.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTI5_ECTSI3.060e-2556.73Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FHG7_ECTSI3.090e-2559.41LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K1P8_9PHAE5.670e-2556.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98986contigEcto-sp8_S_contig98986:250..554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score190.3
Seed ortholog evalue4.5e-46
Seed eggNOG ortholog2880.D7G301
Model size305
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2BFIX@1,2S176@2759
Cds size303
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.9310188-CDS-Ecto-sp8_S_contig98986:249..5521681145357.9310188-CDS-Ecto-sp8_S_contig98986:249..552Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98986 250..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98986.31736.1prot_Ecto-sp8_S_contig98986.31736.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98986 250..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98986.31736.1

>prot_Ecto-sp8_S_contig98986.31736.1 ID=prot_Ecto-sp8_S_contig98986.31736.1|Name=mRNA_Ecto-sp8_S_contig98986.31736.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=101bp
VSFIGNAAEVAGGAVFVSGTGFGPVFTGARFISNSAQVGGAVSSVGSGNL
KENANISPPNPTTFDRCQFIDNRATATGGAIDSAAGQDAFVNSTFQGNRA
G
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mRNA from alignment at Ecto-sp8_S_contig98986:250..554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98986.31736.1 ID=mRNA_Ecto-sp8_S_contig98986.31736.1|Name=mRNA_Ecto-sp8_S_contig98986.31736.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=305bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98986:250..554+ (Ectocarpus species8 EcLAC_412)
GTCAGCTTCATTGGAAACGCTGCCGAAGTTGCGGGAGGGGCCGTATTTGT GTCGGGCACAGGGTTCGGCCCGGTGTTCACTGGCGCTAGGTTCATCTCCA ACTCCGCTCAGGTCGGGGGTGCTGTCTCCTCCGTAGGGTCTGGGAACTTG AAGGAAAATGCAAACATTTCACCCCCAAACCCGACAACATTCGACCGTTG CCAATTCATCGACAACCGAGCAACAGCAACGGGTGGAGCTATTGACAGCG CGGCTGGACAAGACGCCTTCGTCAACAGCACGTTTCAGGGCAACCGCGCG GGGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98986:250..554+

>mRNA_Ecto-sp8_S_contig98986.31736.1 ID=mRNA_Ecto-sp8_S_contig98986.31736.1|Name=mRNA_Ecto-sp8_S_contig98986.31736.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98986:250..554+ (Ectocarpus species8 EcLAC_412)
GTCAGCTTCATTGGAAACGCTGCCGAAGTTGCGGGAGGGGCCGTATTTGT
GTCGGGCACAGGGTTCGGCCCGGTGTTCACTGGCGCTAGGTTCATCTCCA
ACTCCGCTCAGGTCGGGGGTGCTGTCTCCTCCGTAGGGTCTGGGAACTTG
AAGGAAAATGCAAACATTTCACCCCCAAACCCGACAACATTCGACCGTTG
CCAATTCATCGACAACCGAGCAACAGCAACGGGTGGAGCTATTGACAGCG
CGGCTGGACAAGACGCCTTCGTCAACAGCACGTTTCAGGGCAACCGCGCG
GGG
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