mRNA_Ecto-sp8_S_contig9897.31733.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9897.31733.1
Unique NamemRNA_Ecto-sp8_S_contig9897.31733.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9897.31733.1 vs. uniprot
Match: D7G8F9_ECTSI (Splicing factor, arginine/serine-rich 2,rnap interacting protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F9_ECTSI)

HSP 1 Score: 830 bits (2144), Expect = 4.130e-292
Identity = 483/537 (89.94%), Postives = 491/537 (91.43%), Query Frame = 2 
Query:    5 MEGVSEPATNDESANASEAASTGSERNVHPGSDHRSAVTPDPTPNDMSLRSTPAESVLRPDVDTRAGIPAAASNVSEAQSPLSSPTPEAPRSSERWPLGKIVVDSRTVRTLCSADGPISQQESKPREVSRASLTVSMSTSHSSVSHDDLSRGRVISAQDQQIAKRSEQASAAYSEVSKTSIEPGIASAAADRSGDTTWADGGACLQNGHKEADDESTRCIRQQLSYAEEAARPNKDTKLEWVASAPRQEDTTPDFGRGERSGTSGRGSHVAPPYEAGIDRRARSPGAVEQASALPSXXXXXXXXXXXXXXDGKAGTTHQSISVRFVGAATALGGFGSVTDSLPTPAMTTEDNNQQLSAAAGLEDRAQMGSVGEHRGPTVPAANRVEMVVSVVREEQEAGDFSTNSQPALPISRGFEGGRGCQASSSTARTTGAAGVVRXXXXXXXXXXXXXXXXXXXXXXXPASTYSSNDITFSGPRSPWDESDDVPSAGCVEVSSAEQRAPMSQSERDRRPEEKQSASASSRESAECDSPGDTADV 1615
            MEGVSEPATNDESANASEAASTGSERNVHPGSD RSAVTPDPTPNDMSLRSTPAESVLRP+VDTRAGIPAAASNVSEAQSPLSSPTPEAPRSSERWPLGKIV+DS+TVR L SADGP SQQESKPRE SRASLT S+STSHSS SHDDLSRGRVISAQDQQIAKRSEQASAAYSEVSKTSIEP IASAAADRSGDTTWADGGACLQNGHKEADDEST CIRQQ  YAEEAARPNK TK EWVASAPRQEDT PDFGRGERSGTS RGSHVAPPYEAGI RRARSPGAVEQASALPSXXXXXXXXX     DGKAGTTHQSI+VRFVG ATALGGFGSVTDS PTPAMTTEDNNQQLSAAAGLED AQMGSVGEHRGPTVPAANRVEMVVSVVREEQEAGDFSTNS+P LPISRGF GGRG QASSSTARTTG AGVVR            XXXXXXXXXXX    YSSNDITFSGP SPWDESDDVPSAGC+EVSSAEQRAP+SQSERDRRPEEKQSASASSRESAECDSPGD ADV
Sbjct:    1 MEGVSEPATNDESANASEAASTGSERNVHPGSDRRSAVTPDPTPNDMSLRSTPAESVLRPEVDTRAGIPAAASNVSEAQSPLSSPTPEAPRSSERWPLGKIVIDSQTVRNLRSADGPTSQQESKPREASRASLTASLSTSHSSGSHDDLSRGRVISAQDQQIAKRSEQASAAYSEVSKTSIEPRIASAAADRSGDTTWADGGACLQNGHKEADDESTHCIRQQSLYAEEAARPNKGTKSEWVASAPRQEDTAPDFGRGERSGTSSRGSHVAPPYEAGIGRRARSPGAVEQASALPSXXXXXXXXX-----DGKAGTTHQSIAVRFVGTATALGGFGSVTDSQPTPAMTTEDNNQQLSAAAGLEDLAQMGSVGEHRGPTVPAANRVEMVVSVVREEQEAGDFSTNSEPVLPISRGFAGGRGRQASSSTARTTGGAGVVRTENASRVPDGRKXXXXXXXXXXXXXXXYSSNDITFSGPHSPWDESDDVPSAGCLEVSSAEQRAPISQSERDRRPEEKQSASASSRESAECDSPGDMADV 532
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9897.31733.1 vs. uniprot
Match: A0A6H5K8F6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F6_9PHAE)

HSP 1 Score: 691 bits (1784), Expect = 8.940e-239
Identity = 393/492 (79.88%), Postives = 405/492 (82.32%), Query Frame = 2 
Query:  143 MSLRSTPAESVLRPDVDTRAGIPAAASNVSEAQSPLSSPTPEAPRSSERWPLGKIVVDSRTVRTLCSADGPISQQESKPREVSRASLTVSMSTSHSSVSHDDLSRGRVISAQDQQIAKRSEQASAAYSEVSKTSIEPGIASAAADRSGDTTWADGGACLQNGHKEADDESTRCIRQQLSYAEEAARPNKDTKLEWVASAPRQEDTTPDFGRGERSGTSGRGSHVAPPYEAGIDRRARSPGAVEQASALPSXXXXXXXXXXXXXXDGKAGTTHQSISVRFVGAATALGGFGSVTDSLPTPAMTTEDNNQQLSAAAGLEDRAQMGSVGEHRGPTVPAANRVEMVVSVVREEQEAGDFSTNSQPALPISRGFEGGRGCQASSSTARTTGAAGVVRXXXXXXXXXXXXXXXXXXXXXXX-PASTYSSNDITFSGPRSPWDESDDVPSAGCVEVSSAEQRAPMSQSERDRRPEEKQSASASSRESAECDSPGDTADV 1615
            M LRSTPAESVLRP+VDTRAGIPAAASNVS  QSPLSSPTPEAPR SE WPL K  VDSRTVR LCSADGP SQQESK RE+S ASL VS STSHSSVSHDDLSRGRV SAQDQQIAKRSEQASAAYSEVSKTSIE GIASAAADRSGDTT ADGGACLQNGHKEADDESTRCIRQQ SYAEEAARPNKDT  EWVASAPRQEDT PDFGRGE SGTSGRGSH APPYE  I RRARSP AVEQAS LPS              DGKAGTTHQSI+VRFVG+A ALGGFGSV +S PTPAMTTED NQQL+AAAGLED  Q GSVGEHRGPTVPAANRV MVVS VR+EQEAG+FSTNSQPALPI+RGF GGRGCQASSSTARTTG AGVVR                        P  ++  NDIT SGP SPWDESDDV SAGCVEVSSAEQRAP+SQSERD RPEEKQSAS SSRESAECDS GDTADV
Sbjct:    1 MCLRSTPAESVLRPEVDTRAGIPAAASNVSATQSPLSSPTPEAPRRSEGWPLAKNAVDSRTVRNLCSADGPASQQESKARELSGASLIVSTSTSHSSVSHDDLSRGRVTSAQDQQIAKRSEQASAAYSEVSKTSIEAGIASAAADRSGDTTGADGGACLQNGHKEADDESTRCIRQQSSYAEEAARPNKDTNPEWVASAPRQEDTAPDFGRGESSGTSGRGSHFAPPYEEDIGRRARSPDAVEQASELPSSALSSSALP-----DGKAGTTHQSIAVRFVGSAAALGGFGSVANSQPTPAMTTEDKNQQLNAAAGLEDGVQRGSVGEHRGPTVPAANRVGMVVSAVRDEQEAGNFSTNSQPALPIARGFAGGRGCQASSSTARTTGGAGVVRTENASRVPDGSKPSQVLPTPSGPSPDPSFYPNDITSSGPHSPWDESDDVSSAGCVEVSSAEQRAPISQSERDCRPEEKQSASVSSRESAECDSAGDTADV 487
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9897.31733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8F9_ECTSI4.130e-29289.94Splicing factor, arginine/serine-rich 2,rnap inter... [more]
A0A6H5K8F6_9PHAE8.940e-23979.88RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9897contigEcto-sp8_S_contig9897:5404..7018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score844.0
Seed ortholog evalue4e-242
Seed eggNOG ortholog2880.D7G8F9
Model size1617
KEGG koko:K10631
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.DNA topoisomerase binding
EggNOG OGsKOG4430@1,KOG4430@2759
EC2.3.2.27
Cds size1611
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.8116426-UTR-Ecto-sp8_S_contig9897:5403..54071681145357.8116426-UTR-Ecto-sp8_S_contig9897:5403..5407Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9897 5404..5407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.8249898-CDS-Ecto-sp8_S_contig9897:5407..70181681145357.8249898-CDS-Ecto-sp8_S_contig9897:5407..7018Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9897 5408..7018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9897.31733.1prot_Ecto-sp8_S_contig9897.31733.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9897 5408..7018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9897.31733.1

>prot_Ecto-sp8_S_contig9897.31733.1 ID=prot_Ecto-sp8_S_contig9897.31733.1|Name=mRNA_Ecto-sp8_S_contig9897.31733.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=537bp
MEGVSEPATNDESANASEAASTGSERNVHPGSDHRSAVTPDPTPNDMSLR
STPAESVLRPDVDTRAGIPAAASNVSEAQSPLSSPTPEAPRSSERWPLGK
IVVDSRTVRTLCSADGPISQQESKPREVSRASLTVSMSTSHSSVSHDDLS
RGRVISAQDQQIAKRSEQASAAYSEVSKTSIEPGIASAAADRSGDTTWAD
GGACLQNGHKEADDESTRCIRQQLSYAEEAARPNKDTKLEWVASAPRQED
TTPDFGRGERSGTSGRGSHVAPPYEAGIDRRARSPGAVEQASALPSSALP
SSALPSSALPDGKAGTTHQSISVRFVGAATALGGFGSVTDSLPTPAMTTE
DNNQQLSAAAGLEDRAQMGSVGEHRGPTVPAANRVEMVVSVVREEQEAGD
FSTNSQPALPISRGFEGGRGCQASSSTARTTGAAGVVRTENASRVPDGRK
PSQVPTPSRPSPASTYSSNDITFSGPRSPWDESDDVPSAGCVEVSSAEQR
APMSQSERDRRPEEKQSASASSRESAECDSPGDTADV
back to top

mRNA from alignment at Ecto-sp8_S_contig9897:5404..7018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9897.31733.1 ID=mRNA_Ecto-sp8_S_contig9897.31733.1|Name=mRNA_Ecto-sp8_S_contig9897.31733.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1615bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9897:5404..7018+ (Ectocarpus species8 EcLAC_412)
GGCAATGGAAGGCGTCAGTGAACCAGCCACAAACGATGAGTCGGCGAACG
CCAGTGAGGCAGCATCAACTGGATCGGAACGCAACGTACACCCAGGAAGC
GATCATAGAAGTGCGGTTACGCCCGACCCCACGCCAAACGACATGTCCTT
GAGGTCGACACCTGCCGAATCGGTTCTGAGGCCTGACGTTGACACTCGTG
CCGGGATACCCGCTGCGGCCAGCAACGTTTCGGAGGCCCAGTCGCCCTTG
TCTTCCCCCACGCCAGAAGCCCCGCGGAGCTCAGAGAGATGGCCACTCGG
GAAAATCGTGGTTGACAGCCGGACGGTGCGTACTCTATGTTCAGCCGATG
GACCAATATCGCAACAAGAAAGCAAACCCCGAGAGGTTTCGAGGGCCAGC
TTGACAGTCAGTATGTCGACGTCGCACTCGTCTGTGTCCCATGATGATCT
ATCGCGTGGCCGGGTCATATCTGCGCAAGATCAGCAGATCGCGAAGCGAA
GCGAACAAGCGTCTGCGGCATACTCGGAGGTATCGAAAACATCGATCGAG
CCCGGAATTGCTTCAGCAGCTGCTGATCGTTCGGGCGACACCACTTGGGC
GGACGGTGGGGCGTGTTTGCAGAACGGGCACAAAGAGGCAGACGACGAAA
GCACACGTTGTATTCGCCAGCAATTGTCGTATGCCGAAGAAGCCGCGCGG
CCTAACAAGGATACGAAATTGGAGTGGGTAGCATCAGCACCACGACAAGA
AGACACAACACCGGACTTCGGTCGAGGCGAGAGGAGCGGAACTTCCGGCA
GAGGTTCTCACGTCGCGCCACCGTATGAAGCAGGCATCGACAGAAGAGCA
CGTTCGCCAGGCGCTGTTGAACAGGCGAGCGCTCTTCCCAGCTCCGCTCT
TCCCAGCTCTGCTCTTCCCAGCTCCGCTCTTCCTGATGGTAAGGCTGGGA
CAACGCACCAGAGTATTTCTGTACGTTTCGTAGGAGCAGCAACAGCACTT
GGTGGATTCGGATCGGTAACCGATAGTCTGCCAACTCCGGCGATGACGAC
CGAGGACAACAACCAGCAACTAAGCGCGGCTGCGGGCCTTGAAGACCGGG
CCCAAATGGGATCTGTCGGGGAACACAGGGGCCCTACCGTGCCTGCAGCG
AATCGCGTTGAGATGGTAGTGTCCGTAGTCCGCGAGGAGCAGGAAGCCGG
GGACTTCTCCACGAACAGCCAACCAGCATTGCCGATATCCCGGGGTTTCG
AAGGGGGTAGGGGATGTCAGGCCTCTTCTTCCACAGCTCGGACTACGGGG
GCCGCAGGCGTAGTTCGAACAGAAAATGCGTCGAGGGTTCCCGATGGTCG
TAAACCGTCGCAAGTGCCCACCCCCAGTAGGCCTTCGCCCGCCTCTACCT
ATTCTTCGAACGATATCACATTTTCTGGACCACGTTCCCCGTGGGATGAA
TCTGACGACGTGCCGTCGGCTGGTTGCGTGGAGGTTTCTTCCGCAGAGCA
ACGCGCGCCGATGTCACAGAGTGAGCGAGATCGGAGACCGGAGGAAAAAC
AATCGGCATCAGCCTCTTCGAGGGAGTCCGCCGAATGCGATTCGCCAGGA
GATACGGCCGACGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9897:5404..7018+

>mRNA_Ecto-sp8_S_contig9897.31733.1 ID=mRNA_Ecto-sp8_S_contig9897.31733.1|Name=mRNA_Ecto-sp8_S_contig9897.31733.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1611bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9897:5404..7018+ (Ectocarpus species8 EcLAC_412)
ATGGAAGGCGTCAGTGAACCAGCCACAAACGATGAGTCGGCGAACGCCAG
TGAGGCAGCATCAACTGGATCGGAACGCAACGTACACCCAGGAAGCGATC
ATAGAAGTGCGGTTACGCCCGACCCCACGCCAAACGACATGTCCTTGAGG
TCGACACCTGCCGAATCGGTTCTGAGGCCTGACGTTGACACTCGTGCCGG
GATACCCGCTGCGGCCAGCAACGTTTCGGAGGCCCAGTCGCCCTTGTCTT
CCCCCACGCCAGAAGCCCCGCGGAGCTCAGAGAGATGGCCACTCGGGAAA
ATCGTGGTTGACAGCCGGACGGTGCGTACTCTATGTTCAGCCGATGGACC
AATATCGCAACAAGAAAGCAAACCCCGAGAGGTTTCGAGGGCCAGCTTGA
CAGTCAGTATGTCGACGTCGCACTCGTCTGTGTCCCATGATGATCTATCG
CGTGGCCGGGTCATATCTGCGCAAGATCAGCAGATCGCGAAGCGAAGCGA
ACAAGCGTCTGCGGCATACTCGGAGGTATCGAAAACATCGATCGAGCCCG
GAATTGCTTCAGCAGCTGCTGATCGTTCGGGCGACACCACTTGGGCGGAC
GGTGGGGCGTGTTTGCAGAACGGGCACAAAGAGGCAGACGACGAAAGCAC
ACGTTGTATTCGCCAGCAATTGTCGTATGCCGAAGAAGCCGCGCGGCCTA
ACAAGGATACGAAATTGGAGTGGGTAGCATCAGCACCACGACAAGAAGAC
ACAACACCGGACTTCGGTCGAGGCGAGAGGAGCGGAACTTCCGGCAGAGG
TTCTCACGTCGCGCCACCGTATGAAGCAGGCATCGACAGAAGAGCACGTT
CGCCAGGCGCTGTTGAACAGGCGAGCGCTCTTCCCAGCTCCGCTCTTCCC
AGCTCTGCTCTTCCCAGCTCCGCTCTTCCTGATGGTAAGGCTGGGACAAC
GCACCAGAGTATTTCTGTACGTTTCGTAGGAGCAGCAACAGCACTTGGTG
GATTCGGATCGGTAACCGATAGTCTGCCAACTCCGGCGATGACGACCGAG
GACAACAACCAGCAACTAAGCGCGGCTGCGGGCCTTGAAGACCGGGCCCA
AATGGGATCTGTCGGGGAACACAGGGGCCCTACCGTGCCTGCAGCGAATC
GCGTTGAGATGGTAGTGTCCGTAGTCCGCGAGGAGCAGGAAGCCGGGGAC
TTCTCCACGAACAGCCAACCAGCATTGCCGATATCCCGGGGTTTCGAAGG
GGGTAGGGGATGTCAGGCCTCTTCTTCCACAGCTCGGACTACGGGGGCCG
CAGGCGTAGTTCGAACAGAAAATGCGTCGAGGGTTCCCGATGGTCGTAAA
CCGTCGCAAGTGCCCACCCCCAGTAGGCCTTCGCCCGCCTCTACCTATTC
TTCGAACGATATCACATTTTCTGGACCACGTTCCCCGTGGGATGAATCTG
ACGACGTGCCGTCGGCTGGTTGCGTGGAGGTTTCTTCCGCAGAGCAACGC
GCGCCGATGTCACAGAGTGAGCGAGATCGGAGACCGGAGGAAAAACAATC
GGCATCAGCCTCTTCGAGGGAGTCCGCCGAATGCGATTCGCCAGGAGATA
CGGCCGACGTC
back to top