mRNA_Ecto-sp8_S_contig98964.31731.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98964.31731.1
Unique NamemRNA_Ecto-sp8_S_contig98964.31731.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A6H5L083_9PHAE (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L083_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 8.260e-60
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 MQVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 297
            M VMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK
Sbjct:   69 MAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 167
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: D7FLF8_ECTSI (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 1.990e-58
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 MQVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 297
            M VMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK
Sbjct:  185 MAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 283
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A836C825_9STRA (FACT complex subunit SSRP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C825_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.950e-42
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:    7 VMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKV 300
            VM+RANI DVKG VL E + S GTF  PRGRY++EMYS F+RMHGS+YDYKIQY DI+KLFLLEKPD+RYVAFVISLDKP+RQGQQ+YQHLVL+ +KV
Sbjct:  148 VMDRANIRDVKGSVLCELDSSLGTFLTPRGRYALEMYSTFLRMHGSKYDYKIQYEDINKLFLLEKPDDRYVAFVISLDKPVRQGQQRYQHLVLQASKV 245
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A7S0C3Q8_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3Q8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.250e-37
Identity = 60/99 (60.61%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:    4 QVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKV 300
            ++M +ANI +  G V+ EF+ES+GTF  PRGRY++E+Y  F+R+ G++YDYKI+Y+DI++LFLL KPD+ ++AFVI+LDKPIRQGQQ+YQ+LV++TTKV
Sbjct:   74 RIMTKANIKNTSGNVICEFDESKGTFLTPRGRYTIELYDSFLRLRGNKYDYKIKYDDITRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVMQTTKV 172
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A7S2US25_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2US25_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.400e-36
Identity = 61/96 (63.54%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:   10 MERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 297
            M++ANI +  G V+VEF+E +GTF  PRGRY +E+Y  F+RM G++YDYKI+Y+DIS+LFLL KPD+ ++AFVI+LDKPIRQGQQ+YQ+LV++TTK
Sbjct:    1 MKKANIKNTTGDVIVEFDEEKGTFLTPRGRYMIELYDTFLRMRGNKYDYKIKYDDISRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVMQTTK 96
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A6U3RIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RIK7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.000e-34
Identity = 63/98 (64.29%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    4 QVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 297
            ++M+ ANI +  G V+VEF+ES+GTF  PRGRY++E+Y  F+RM G++YDYKI+Y+DISKLFLL KPD+ ++AFVI+LDKPIRQGQQ+YQ LV++TTK
Sbjct:  229 RIMKMANIKNTTGSVIVEFDESRGTFLTPRGRYTIELYDSFLRMRGNKYDYKIKYDDISKLFLLPKPDDVHMAFVIALDKPIRQGQQRYQMLVMQTTK 326
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A7R9VM85_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VM85_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.240e-34
Identity = 61/98 (62.24%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    4 QVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 297
            ++M+ ANI    G V+VE  E +GTF  PRGRY++E+Y  F+RM G++YDYKI+Y+DIS+LFLL KPDE ++AFVI+LDKPIRQGQQ+YQ+LV++TTK
Sbjct:   53 RIMKNANIKRTTGDVIVEIPEEKGTFLTPRGRYAIELYDTFLRMRGAKYDYKIKYDDISRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQNLVMQTTK 150
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A7S2SJ65_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SJ65_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.920e-33
Identity = 60/98 (61.22%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    4 QVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 297
            ++M+ A I +  G V+VEF+E++GTF  PRGRY +E+Y  F+RM G++YDYKI+Y+DI++LFLL KPD+ ++AFVI+LDKPIRQGQQ+YQ LVL+TTK
Sbjct:  219 RIMKNAKIKNTAGDVIVEFDENKGTFLTPRGRYLIELYDSFLRMRGNKYDYKIKYDDIARLFLLPKPDDTHMAFVIALDKPIRQGQQRYQMLVLQTTK 316
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BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A7S4HR37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HR37_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.660e-33
Identity = 61/98 (62.24%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    4 QVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 297
            ++M+ ANI    G V+VE  E++GTF  PRGRY++E+Y  F+RM G++YDYKI+Y+DIS+LFLL KPDE ++AFVI+LDKPIRQGQQ+YQ+LV++TTK
Sbjct:  221 RIMKNANIKRTTGDVIVEIPEAKGTFLTPRGRYAIELYDTFLRMRGAKYDYKIKYDDISRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQNLVMQTTK 318
[Close]
BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Match: A0A1E7FQX7_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQX7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.320e-32
Identity = 60/98 (61.22%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    4 QVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTK 297
            ++M+ ANI    G V+VEF+  +G+F  PRGRYS+E+Y  F RM G +YDYKI+Y+DIS+LFLL KPD+ ++AFVI+LDKPIRQGQQ+YQ+LVL+T K
Sbjct:  168 RIMQMANIRKTTGDVIVEFDLEKGSFLTPRGRYSIELYERFFRMRGQKYDYKIKYDDISRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVLQTNK 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98964.31731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L083_9PHAE8.260e-6098.99FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sp. ... [more]
D7FLF8_ECTSI1.990e-5898.99FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sili... [more]
A0A836C825_9STRA1.950e-4276.53FACT complex subunit SSRP1 n=1 Tax=Tribonema minus... [more]
A0A7S0C3Q8_9STRA1.250e-3760.61FACT complex subunit SSRP1 (Fragment) n=1 Tax=Prob... [more]
A0A7S2US25_9STRA4.400e-3663.54FACT complex subunit SSRP1 (Fragment) n=1 Tax=Atth... [more]
A0A6U3RIK7_9STRA1.000e-3464.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9VM85_9STRA1.240e-3462.24FACT complex subunit SSRP1 (Fragment) n=1 Tax=Pseu... [more]
A0A7S2SJ65_9STRA3.920e-3361.22FACT complex subunit SSRP1 (Fragment) n=1 Tax=Euca... [more]
A0A7S4HR37_9STRA5.660e-3362.24Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7FQX7_9STRA2.320e-3261.22FACT complex subunit SSRP1 (Fragment) n=1 Tax=Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98964contigEcto-sp8_S_contig98964:6..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score199.9
Seed ortholog evalue6e-49
Seed eggNOG ortholog2880.D7FLF8
Preferred namePOB3
Model size321
KEGG koko:K09272
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000741,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005719,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0006997,GO:0007154,GO:0007275,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009553,GO:0009559,GO:0009561,GO:0009605,GO:0009607,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010197,GO:0010228,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022414,GO:0022607,GO:0030154,GO:0030447,GO:0030466,GO:0030702,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034724,GO:0034728,GO:0035101,GO:0036170,GO:0036180,GO:0040007,GO:0040029,GO:0042393,GO:0042594,GO:0042802,GO:0042803,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043486,GO:0043596,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046983,GO:0048229,GO:0048284,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070727,GO:0071103,GO:0071496,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990141,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141
Exons2
EggNOG free text desc.DNA replication
EggNOG OGsCOG5165@1,KOG0526@2759
Cds size321
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.7270415-CDS-Ecto-sp8_S_contig98964:5..1801681145357.7270415-CDS-Ecto-sp8_S_contig98964:5..180Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98964 6..180 -
1681145357.7404494-CDS-Ecto-sp8_S_contig98964:384..5301681145357.7404494-CDS-Ecto-sp8_S_contig98964:384..530Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98964 385..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98964.31731.1prot_Ecto-sp8_S_contig98964.31731.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98964 6..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98964.31731.1

>prot_Ecto-sp8_S_contig98964.31731.1 ID=prot_Ecto-sp8_S_contig98964.31731.1|Name=mRNA_Ecto-sp8_S_contig98964.31731.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=107bp
MQVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRY
DYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKV
RRHSAN*
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mRNA from alignment at Ecto-sp8_S_contig98964:6..530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98964.31731.1 ID=mRNA_Ecto-sp8_S_contig98964.31731.1|Name=mRNA_Ecto-sp8_S_contig98964.31731.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98964:6..530- (Ectocarpus species8 EcLAC_412)
ATGCAGGTGATGGAGCGGGCTAATATTCACGATGTCAAGGGGAAAGTACT
GGTCGAGTTCAACGAGAGCCAAGGCACTTTCGACTTCCCGAGAGGACGCT
ACTCAGTCGAAATGTATAGCCACTTCATGCGGATGCATGGCTCCAGGTAA
GATCGTATTGCATCCGTTTCTTTCACGCGTTCTAAACAAGTCGACCGTTT
TAGGAGTTTTGCGGCACTTCATTATTCCTTGAATCGAGAGTCAATTTGGC
GCTCCTTGTGCAGCACAAATATGGCCCATCGAATGTGTTCTGTGTTTATT
TCCGAGATGTCGCAATTTTTGTTCTTACTCCCCCCGCCTCCTACCCCTAG
GTACGACTACAAGATCCAGTACAACGATATATCCAAGTTGTTCTTGCTGG
AAAAGCCGGATGAGCGCTACGTGGCGTTCGTGATATCTCTGGATAAGCCT
ATTCGGCAGGGGCAACAAAAGTACCAGCACTTGGTGCTGCGTACAACAAA
GGTACGGCGCCACTCGGCGAACTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98964:6..530-

>mRNA_Ecto-sp8_S_contig98964.31731.1 ID=mRNA_Ecto-sp8_S_contig98964.31731.1|Name=mRNA_Ecto-sp8_S_contig98964.31731.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98964:6..530- (Ectocarpus species8 EcLAC_412)
ATGCAGGTGATGGAGCGGGCTAATATTCACGATGTCAAGGGGAAAGTACT
GGTCGAGTTCAACGAGAGCCAAGGCACTTTCGACTTCCCGAGAGGACGCT
ACTCAGTCGAAATGTATAGCCACTTCATGCGGATGCATGGCTCCAGGTAC
GACTACAAGATCCAGTACAACGATATATCCAAGTTGTTCTTGCTGGAAAA
GCCGGATGAGCGCTACGTGGCGTTCGTGATATCTCTGGATAAGCCTATTC
GGCAGGGGCAACAAAAGTACCAGCACTTGGTGCTGCGTACAACAAAGGTA
CGGCGCCACTCGGCGAACTGA
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