mRNA_Ecto-sp8_S_contig98938.31727.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98938.31727.1
Unique NamemRNA_Ecto-sp8_S_contig98938.31727.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98938.31727.1 vs. uniprot
Match: A0A6H5KFC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFC6_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.360e-55
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 GLGRVLLSRGEHEEAALVYRVAASAAAAIDSNREHGEAQHGLGLALLATGRREEALVACREAERLDPDLSTATSCVGAILTDAGDIAGALTALRHAAEKAER 306
            GLGRVLLSRGEHEEAALVYRVAASAAAAIDSNREHGEAQHGLGLALLATGR EEAL ACREAERLDPDL TATSC+GAILTDAG+IAGALTALRHAAEKAER
Sbjct:   70 GLGRVLLSRGEHEEAALVYRVAASAAAAIDSNREHGEAQHGLGLALLATGRPEEALAACREAERLDPDLPTATSCIGAILTDAGNIAGALTALRHAAEKAER 171
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BLAST of mRNA_Ecto-sp8_S_contig98938.31727.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.040e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 GLGRVLLSRGEHEEAALVYRVAASAAAAIDSNREHGEAQHGLGLALLATGRREEALVACREAERLDPDLSTATSCVGAILTDAGDIAGALTALRHAAEKAER 306
            GLGRVLLSRGEHEEAALVYRVAASAAAA+DSNREHGEAQHGLGLALLATGR EEALVACREAERLDPDL TATSC+GAILTDAGDIAGALTALRHAA+K ER
Sbjct:   70 GLGRVLLSRGEHEEAALVYRVAASAAAAVDSNREHGEAQHGLGLALLATGRPEEALVACREAERLDPDLPTATSCIGAILTDAGDIAGALTALRHAADKTER 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98938.31727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFC6_9PHAE2.360e-5595.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ17_ECTSI1.040e-5094.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98938contigEcto-sp8_S_contig98938:226..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score181.4
Seed ortholog evalue2.1e-43
Seed eggNOG ortholog2880.D7FQ17
Model size306
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG0045@1,KOG0045@2759,KOG4626@2759
EC2.4.1.255
Cds size306
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.477162-CDS-Ecto-sp8_S_contig98938:225..5311681145357.477162-CDS-Ecto-sp8_S_contig98938:225..531Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98938 226..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98938.31727.1prot_Ecto-sp8_S_contig98938.31727.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98938 226..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98938.31727.1

>prot_Ecto-sp8_S_contig98938.31727.1 ID=prot_Ecto-sp8_S_contig98938.31727.1|Name=mRNA_Ecto-sp8_S_contig98938.31727.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=102bp
GLGRVLLSRGEHEEAALVYRVAASAAAAIDSNREHGEAQHGLGLALLATG
RREEALVACREAERLDPDLSTATSCVGAILTDAGDIAGALTALRHAAEKA
ER
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mRNA from alignment at Ecto-sp8_S_contig98938:226..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98938.31727.1 ID=mRNA_Ecto-sp8_S_contig98938.31727.1|Name=mRNA_Ecto-sp8_S_contig98938.31727.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=306bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98938:226..531+ (Ectocarpus species8 EcLAC_412)
GGGTTGGGTCGCGTCCTGCTGTCCCGGGGCGAACACGAAGAAGCCGCCCT
TGTCTACCGTGTAGCAGCGTCCGCCGCTGCCGCCATAGATTCAAACCGCG
AGCACGGAGAGGCACAGCACGGGCTGGGCCTGGCACTCCTCGCAACCGGT
CGACGAGAGGAAGCTCTCGTGGCCTGCCGAGAGGCTGAACGACTCGATCC
CGACCTTTCAACAGCGACTTCCTGCGTTGGTGCTATTTTGACCGACGCTG
GGGACATCGCTGGTGCGCTCACGGCATTGCGCCACGCGGCAGAAAAGGCA
GAACGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98938:226..531+

>mRNA_Ecto-sp8_S_contig98938.31727.1 ID=mRNA_Ecto-sp8_S_contig98938.31727.1|Name=mRNA_Ecto-sp8_S_contig98938.31727.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98938:226..531+ (Ectocarpus species8 EcLAC_412)
GGGTTGGGTCGCGTCCTGCTGTCCCGGGGCGAACACGAAGAAGCCGCCCT
TGTCTACCGTGTAGCAGCGTCCGCCGCTGCCGCCATAGATTCAAACCGCG
AGCACGGAGAGGCACAGCACGGGCTGGGCCTGGCACTCCTCGCAACCGGT
CGACGAGAGGAAGCTCTCGTGGCCTGCCGAGAGGCTGAACGACTCGATCC
CGACCTTTCAACAGCGACTTCCTGCGTTGGTGCTATTTTGACCGACGCTG
GGGACATCGCTGGTGCGCTCACGGCATTGCGCCACGCGGCAGAAAAGGCA
GAACGG
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