mRNA_Ecto-sp8_S_contig98890.31725.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98890.31725.1
Unique NamemRNA_Ecto-sp8_S_contig98890.31725.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98890.31725.1 vs. uniprot
Match: A0A6H5KER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER7_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.360e-55
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 MMTSRQQRCSRRPAACCLILALQGLQGQSFVAPSCFLNAQRTSFTRAAGQQQTPSRAAAARPVSSLNSAPCLAASQEQAKPPGQWSPVRPGGKVPDQHDNDDDE 312
            MM SRQQRCSRRPAACCLI+ALQGLQGQSFVAPSCFLNAQR SFT+AAGQQQT SRAAAARPVSSLNS P LAASQEQAKPPGQWSPVRPGGKVPDQ+DNDD E
Sbjct:    1 MMNSRQQRCSRRPAACCLIVALQGLQGQSFVAPSCFLNAQRASFTQAAGQQQTTSRAAAARPVSSLNSVPFLAASQEQAKPPGQWSPVRPGGKVPDQNDNDDHE 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98890.31725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KER7_9PHAE1.360e-5591.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98890contigEcto-sp8_S_contig98890:248..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size312
Hectar predicted targeting categorysignal peptide
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.2726133-CDS-Ecto-sp8_S_contig98890:247..5591681145357.2726133-CDS-Ecto-sp8_S_contig98890:247..559Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98890 248..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98890.31725.1prot_Ecto-sp8_S_contig98890.31725.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98890 248..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98890.31725.1

>prot_Ecto-sp8_S_contig98890.31725.1 ID=prot_Ecto-sp8_S_contig98890.31725.1|Name=mRNA_Ecto-sp8_S_contig98890.31725.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=104bp
MMTSRQQRCSRRPAACCLILALQGLQGQSFVAPSCFLNAQRTSFTRAAGQ
QQTPSRAAAARPVSSLNSAPCLAASQEQAKPPGQWSPVRPGGKVPDQHDN
DDDE
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mRNA from alignment at Ecto-sp8_S_contig98890:248..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98890.31725.1 ID=mRNA_Ecto-sp8_S_contig98890.31725.1|Name=mRNA_Ecto-sp8_S_contig98890.31725.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98890:248..559+ (Ectocarpus species8 EcLAC_412)
ATGATGACCTCGCGGCAACAACGCTGCAGCAGACGGCCTGCTGCTTGCTG
TTTGATTCTTGCCTTGCAGGGGCTGCAAGGGCAGTCGTTTGTTGCGCCGT
CCTGTTTCCTCAACGCGCAGCGGACGAGCTTCACCCGGGCAGCAGGGCAA
CAACAAACACCATCACGTGCGGCAGCAGCGCGACCCGTTTCGTCTCTCAA
CTCCGCGCCGTGTTTGGCCGCGTCGCAGGAGCAGGCGAAACCTCCTGGGC
AATGGTCACCCGTACGACCTGGTGGCAAAGTTCCTGACCAACATGACAAC
GACGATGATGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98890:248..559+

>mRNA_Ecto-sp8_S_contig98890.31725.1 ID=mRNA_Ecto-sp8_S_contig98890.31725.1|Name=mRNA_Ecto-sp8_S_contig98890.31725.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98890:248..559+ (Ectocarpus species8 EcLAC_412)
ATGATGACCTCGCGGCAACAACGCTGCAGCAGACGGCCTGCTGCTTGCTG
TTTGATTCTTGCCTTGCAGGGGCTGCAAGGGCAGTCGTTTGTTGCGCCGT
CCTGTTTCCTCAACGCGCAGCGGACGAGCTTCACCCGGGCAGCAGGGCAA
CAACAAACACCATCACGTGCGGCAGCAGCGCGACCCGTTTCGTCTCTCAA
CTCCGCGCCGTGTTTGGCCGCGTCGCAGGAGCAGGCGAAACCTCCTGGGC
AATGGTCACCCGTACGACCTGGTGGCAAAGTTCCTGACCAACATGACAAC
GACGATGATGAG
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