mRNA_Ecto-sp8_S_contig98857.31720.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98857.31720.1
Unique NamemRNA_Ecto-sp8_S_contig98857.31720.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98857.31720.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 6.330e-37
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 EFFQLFISNDAEKGIPSFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIGPNSTRAVKLQR 201
            EFFQLFISNDAEKGIP+FHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIGPNSTRAVKLQR
Sbjct:  462 EFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIGPNSTRAVKLQR 528
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BLAST of mRNA_Ecto-sp8_S_contig98857.31720.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.500e-36
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 EFFQLFISNDAEKGIPSFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIGPNSTRAVKLQR 201
            +FFQLFISNDAEKGIP+FHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIGPNSTRAVKLQR
Sbjct:  353 DFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIGPNSTRAVKLQR 419
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BLAST of mRNA_Ecto-sp8_S_contig98857.31720.1 vs. uniprot
Match: A0A7S4MEH9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MEH9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.310e-6
Identity = 24/68 (35.29%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    1 EFFQLFISNDAEKGIPSFHQS-MGDSDVKATPWKVAG-GALGMTREIRFVHPISAPIGPNSTRAVKLQ 198
            +F+ LF+SNDA   I ++    +GD+ V+ + W ++   +  +TR +R+VHP++AP+ P +  A K Q
Sbjct:  269 KFYSLFLSNDAVHPIGNYMSDVLGDTRVETSSWSLSEQDSFSLTRTVRYVHPVNAPMAPPAASATKEQ 336
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98857.31720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0Q2_9PHAE6.330e-3798.51VASt domain-containing protein (Fragment) n=1 Tax=... [more]
D7FKF6_ECTSI1.500e-3697.01VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S4MEH9_9STRA3.310e-635.29Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98857contigEcto-sp8_S_contig98857:193..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score137.5
Seed ortholog evalue2.3e-30
Seed eggNOG ortholog2880.D7FKF6
Preferred nameVAD1
Model size204
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
Exons1
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
Cds size204
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.9138217-CDS-Ecto-sp8_S_contig98857:192..3961681145356.9138217-CDS-Ecto-sp8_S_contig98857:192..396Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98857 193..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98857.31720.1prot_Ecto-sp8_S_contig98857.31720.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98857 193..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98857.31720.1

>prot_Ecto-sp8_S_contig98857.31720.1 ID=prot_Ecto-sp8_S_contig98857.31720.1|Name=mRNA_Ecto-sp8_S_contig98857.31720.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=68bp
EFFQLFISNDAEKGIPSFHQSMGDSDVKATPWKVAGGALGMTREIRFVHP
ISAPIGPNSTRAVKLQR*
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mRNA from alignment at Ecto-sp8_S_contig98857:193..396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98857.31720.1 ID=mRNA_Ecto-sp8_S_contig98857.31720.1|Name=mRNA_Ecto-sp8_S_contig98857.31720.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98857:193..396+ (Ectocarpus species8 EcLAC_412)
GAGTTCTTCCAGCTGTTCATCTCCAACGATGCCGAGAAAGGGATACCGTC
TTTCCACCAGTCTATGGGAGACTCGGACGTGAAAGCTACCCCGTGGAAGG
TGGCCGGCGGGGCGCTGGGCATGACGCGGGAGATCCGCTTCGTGCACCCG
ATCTCCGCTCCGATCGGACCCAACAGCACAAGGGCGGTCAAGCTGCAGCG
GTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98857:193..396+

>mRNA_Ecto-sp8_S_contig98857.31720.1 ID=mRNA_Ecto-sp8_S_contig98857.31720.1|Name=mRNA_Ecto-sp8_S_contig98857.31720.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98857:193..396+ (Ectocarpus species8 EcLAC_412)
GAGTTCTTCCAGCTGTTCATCTCCAACGATGCCGAGAAAGGGATACCGTC
TTTCCACCAGTCTATGGGAGACTCGGACGTGAAAGCTACCCCGTGGAAGG
TGGCCGGCGGGGCGCTGGGCATGACGCGGGAGATCCGCTTCGTGCACCCG
ATCTCCGCTCCGATCGGACCCAACAGCACAAGGGCGGTCAAGCTGCAGCG
GTGA
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