mRNA_Ecto-sp8_S_contig9885.31718.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9885.31718.1
Unique NamemRNA_Ecto-sp8_S_contig9885.31718.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9885.31718.1 vs. uniprot
Match: D8LGU6_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU6_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.810e-34
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 MEIDMSCPFDCQCGAVRCRGLVSGFSNLSRVEQEEYIDGCATRSPPLTGAVKTWAEEHDIV 183
            MEIDM+CPFDCQCGAVRCRG VSGFSNLSR EQEEYIDG AT SPPLTGAVKTWAEEH IV
Sbjct:   44 MEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEYIDGGATGSPPLTGAVKTWAEEHGIV 104
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BLAST of mRNA_Ecto-sp8_S_contig9885.31718.1 vs. uniprot
Match: D8LGU7_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.920e-34
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 MEIDMSCPFDCQCGAVRCRGLVSGFSNLSRVEQEEYIDGCATRSPPLTGAVKTWAEEHDIV 183
            MEIDMSCPF+CQCGAVRCRGLVSGFSNLSRVEQ+EYI+G ATRSP LTGAVK WAEEH+IV
Sbjct:    1 MEIDMSCPFECQCGAVRCRGLVSGFSNLSRVEQKEYINGGATRSPSLTGAVKMWAEEHNIV 61
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BLAST of mRNA_Ecto-sp8_S_contig9885.31718.1 vs. uniprot
Match: A0A6H5K6N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N9_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.020e-31
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 MEIDMSCPFDCQCGAVRCRGLVSGFSNLSRVEQEEYIDGCATRSPPLTGAVKTWAEEHDI 180
            MEIDM+CPFDCQCGAVRCRG VSGFSNLSR EQEEYIDG AT SPPLTGAVKTWAEEH I
Sbjct:  203 MEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEYIDGGATGSPPLTGAVKTWAEEHGI 262
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9885.31718.1 vs. uniprot
Match: A0A6H5JKC4_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.720e-31
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 MEIDMSCPFDCQCGAVRCRGLVSGFSNLSRVEQEEYIDGCATRSPPLTGAVKTWAEEHDIV 183
            MEIDMSCPFDCQCGAVRCRG VSGFSNLSR EQ+EYIDG AT+SPPLTGAVKTWA+E+DIV
Sbjct:  296 MEIDMSCPFDCQCGAVRCRGWVSGFSNLSRAEQKEYIDGGATKSPPLTGAVKTWAQENDIV 356
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9885.31718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGU6_ECTSI5.810e-3490.16Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
D8LGU7_ECTSI9.920e-3488.52Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6N9_9PHAE2.020e-3190.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKC4_9PHAE2.720e-3188.52Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9885contigEcto-sp8_S_contig9885:404..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size186
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001250.1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.805904-CDS-Ecto-sp8_S_contig9885:403..5891681145356.805904-CDS-Ecto-sp8_S_contig9885:403..589Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9885 404..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9885.31718.1prot_Ecto-sp8_S_contig9885.31718.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9885 404..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9885.31718.1

>prot_Ecto-sp8_S_contig9885.31718.1 ID=prot_Ecto-sp8_S_contig9885.31718.1|Name=mRNA_Ecto-sp8_S_contig9885.31718.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=62bp
MEIDMSCPFDCQCGAVRCRGLVSGFSNLSRVEQEEYIDGCATRSPPLTGA
VKTWAEEHDIV*
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mRNA from alignment at Ecto-sp8_S_contig9885:404..589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9885.31718.1 ID=mRNA_Ecto-sp8_S_contig9885.31718.1|Name=mRNA_Ecto-sp8_S_contig9885.31718.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9885:404..589+ (Ectocarpus species8 EcLAC_412)
ATGGAGATCGACATGTCGTGTCCCTTCGACTGCCAATGCGGCGCGGTCAG
ATGCAGAGGCTTGGTGTCCGGCTTTTCAAACCTTTCTCGGGTCGAGCAGG
AGGAGTATATCGACGGGTGTGCGACGAGGTCCCCGCCCCTCACCGGCGCC
GTGAAAACTTGGGCTGAGGAACACGACATCGTATAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9885:404..589+

>mRNA_Ecto-sp8_S_contig9885.31718.1 ID=mRNA_Ecto-sp8_S_contig9885.31718.1|Name=mRNA_Ecto-sp8_S_contig9885.31718.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9885:404..589+ (Ectocarpus species8 EcLAC_412)
ATGGAGATCGACATGTCGTGTCCCTTCGACTGCCAATGCGGCGCGGTCAG
ATGCAGAGGCTTGGTGTCCGGCTTTTCAAACCTTTCTCGGGTCGAGCAGG
AGGAGTATATCGACGGGTGTGCGACGAGGTCCCCGCCCCTCACCGGCGCC
GTGAAAACTTGGGCTGAGGAACACGACATCGTATAA
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