mRNA_Ecto-sp8_S_contig9874.31705.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: D7FL93_ECTSI (Thioredoxin O n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL93_ECTSI) HSP 1 Score: 270 bits (689), Expect = 2.650e-85 Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 2
Query: 143 MLRTAGRAIHQQCRQRVPQASTPLCVRHFSAGGGDRLVELSTKDDYVNFPREKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEIDSMSGADANLLEQNVAKLAEA 559
MLRTAGRAIHQ CRQRVPQASTP CVRHFSAGGGDRLVELSTKDDYVNFPREKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTF F+GGQEIDSMSGADANLLEQNVAKLAEA
Sbjct: 1 MLRTAGRAIHQHCRQRVPQASTPPCVRHFSAGGGDRLVELSTKDDYVNFPREKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTF-KFFKGGQEIDSMSGADANLLEQNVAKLAEA 138
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: A0A836CF79_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF79_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.300e-24 Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 2
Query: 212 LCVRHFSA---GGGDRLVELSTKDDYVNFPREKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEIDSMSGADANLLEQNVAKL 550
+ V+H S G G + EL++ DDY + ++K+VLYFTAKWCPPCRRI P +L+ E V F KVDID N+ AA+ A I SVPTF ++ G + +GAD LLE+NV KL
Sbjct: 36 VLVKHLSGAAGGSGGTVKELASMDDYQSSSKDKAVLYFTAKWCPPCRRIAPMYQDLAAEKSDVHFYKVDIDVNKAAAKDAGIMSVPTF-IFYKNGHMVSKFAGADYELLEENVDKL 150
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: A0A7S2FY89_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FY89_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 4.140e-20 Identity = 54/128 (42.19%), Postives = 71/128 (55.47%), Query Frame = 2
Query: 191 VPQASTPLCVRHFSAGGGDRLV--ELSTKDDYVNFPRE-----KSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEIDSMSGADANLLEQNVAKLA 553
+P+A P R G R V L + ++ +F SV YFTA WC PC+RI P ELS+ P ++F KVDID N+ AA A IKSVPTF F+ G + SGAD LLE+ ++K+A
Sbjct: 7 IPRALRPALQRASRTAGSTRSVVMTLESATEWESFQSAAMKDTNSVAYFTASWCGPCKRIAPIYEELSDSHPDITFAKVDIDQNQTAASKAAIKSVPTF-MFFKDGNFVGQFSGADHQLLEETLSKMA 133
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: A0A7S2UE67_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UE67_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.860e-19 Identity = 56/138 (40.58%), Postives = 74/138 (53.62%), Query Frame = 2
Query: 143 MLRTAGRAIHQQCRQRVPQASTPLCVRHFSAGGGDRLVELSTKDDYVNFP--REKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEIDSMSGADANLLEQNVAKL 550
M A A+ Q R + ++ R A V LS +D F KSVLYFTA WCPPC+ I P +LSE+ V+FGKVD+D N ++A ++SVPTF +F G + SGADAN LE+ + KL
Sbjct: 1 MASVARIAMRQMSRSSTSKLASSSLTRRTMAS-----VTLSDEDAVEKFRSLNSKSVLYFTATWCPPCKAIAPIYEKLSEDYSDVAFGKVDVDANSDSALDFEVRSVPTF-VLFDGETAVHKFSGADANQLEEEIKKL 132
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: A0A024U468_9STRA (Thioredoxin n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U468_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 7.290e-19 Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = 2
Query: 200 ASTPLCVRHFSAGGGDRLV-ELSTKDDYVNF---PREKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEIDSM--SGADANLLEQNVAKL 550
A++ + + FS+ G LV EL+ +Y P KSV+YFTA WC PC+ I P AELS VSF KVD+D+ + A +A ++S+PTF + GQ S+ SGAD NLL Q+VAKL
Sbjct: 11 ATSRVSIASFSSRAGASLVKELTEHAEYEQLIARPDAKSVVYFTASWCGPCKMISPVYAELSNMNTDVSFAKVDVDEMDHTAHVAGVRSMPTF-QFYSNGQLQKSLGFSGADPNLLAQSVAKL 132
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: A0A7S3P7G5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7G5_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.360e-18 Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 2
Query: 200 ASTPLCVRH-----FSAGGGDRLVELSTKDDYVNFPRE--KSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEI-DSMSGADANLLEQ 535
A+ PL VR F++ ++ L +D NF ++ KSVLYFTA WCPPC++I P ELS+ T ++FG VD+DDN +AA I +VPTF +F G+++ SGAD N L Q
Sbjct: 10 AAAPLLVRRTTLRAFASVADHKVKTLEELEDVENFRKQNAKSVLYFTAVWCPPCKQIKPVYHELSKSTEKIAFGLVDVDDNGDAAVEFQISAVPTF--IFSNGEKVLQRFSGADPNQLTQ 127
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: W4H7J0_9STRA (Thioredoxin n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7J0_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 3.710e-18 Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 2
Query: 185 QRVPQASTPLCVRHFSAGGGDRLV-ELSTKDDYVNF---PREKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGG-QEIDSMSGADANLLEQNVAKL 550
+R A++ V FS+ GG LV EL+ +Y P KSV+YFTA WC PC+ I P A LS + +SF KVD+D+ + A +A ++S+PTF G Q+ SGAD LLE NV KL
Sbjct: 20 RRFAAATSRASVARFSSRGGASLVKELAEHAEYEQLIARPDAKSVVYFTAAWCGPCKMISPIYANLSNKNEDISFVKVDVDELDHTAHVAGVRSMPTFQFYANGKLQQSLGFSGADPTLLESNVNKL 146
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: A0A7R9WLB8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WLB8_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.030e-17 Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 2
Query: 251 LVELSTKDDYVNFP--REKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEIDSMSGADANLLEQNVAKLAE 556
++ LS D F + KSVLYFTA WCPPC+ I +LS+E + FGKVD+DDN E A I VPTF +F G+++ SGAD + L +VAKL E
Sbjct: 26 VINLSDMDATTKFTDGQSKSVLYFTATWCPPCKMIKEPYEKLSDEFTEIGFGKVDVDDNSETAADYDITGVPTF-ILFNDGEQVGRFSGADIDKLSNSVAKLDE 128
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: A0A7S2H9R5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H9R5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.190e-17 Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2
Query: 254 VELSTKDDYVNFP--REKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEIDSMSGADANLLEQNVAKL 550
V LS D F KSVLYFTA WCPPC+ I P E+S P ++FGKVD+D+N + A + +VPTF +F G + I+ SGAD+ LE +V +L
Sbjct: 32 VNLSDADAVEKFRMLNSKSVLYFTATWCPPCKAIAPVYEEISTRYPHIAFGKVDVDENSDVALDFEVNAVPTF-VLFDGEKAIEKFSGADSGKLEHHVMEL 131
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Match: A0A7S2P9F2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P9F2_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.270e-17 Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 2
Query: 260 LSTKDDYVNFPR--EKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFNNVFRGGQEIDSMSGADANLLEQNVAKL 550
LS D F + +KSV+YFTA WCPPC+ I P E+SE+ V+FGKVD+DDN ++A I +VPTF +F G + MSGAD+N LE+ + L
Sbjct: 71 LSDPDALSKFTQINDKSVVYFTATWCPPCKVISPIYTEMSEKHAGVAFGKVDVDDNSDSAVDFEINAVPTF-VLFNGENVSNRMSGADSNKLEELIEDL 168 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9874.31705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9874.31705.1 >prot_Ecto-sp8_S_contig9874.31705.1 ID=prot_Ecto-sp8_S_contig9874.31705.1|Name=mRNA_Ecto-sp8_S_contig9874.31705.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=140bp MLRTAGRAIHQQCRQRVPQASTPLCVRHFSAGGGDRLVELSTKDDYVNFPback to top mRNA from alignment at Ecto-sp8_S_contig9874:1013..6050+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9874.31705.1 ID=mRNA_Ecto-sp8_S_contig9874.31705.1|Name=mRNA_Ecto-sp8_S_contig9874.31705.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5038bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9874:1013..6050+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9874:1013..6050+ >mRNA_Ecto-sp8_S_contig9874.31705.1 ID=mRNA_Ecto-sp8_S_contig9874.31705.1|Name=mRNA_Ecto-sp8_S_contig9874.31705.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9874:1013..6050+ (Ectocarpus species8 EcLAC_412)back to top |