mRNA_Ecto-sp8_S_contig9864.31687.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9864.31687.1
Unique NamemRNA_Ecto-sp8_S_contig9864.31687.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9864.31687.1 vs. uniprot
Match: D7G0F5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0F5_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 4.220e-36
Identity = 70/86 (81.40%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 PLFARVQNSRLCVCLHSCNLTDARHDDREMATDNAVSALGNLLEAQRDTLSNPETGVGGEEAVGRAWGVWLGYMPLRADDEEAEKV 258
            P FA      L V +      DARHDDREMATDNAVSALGNLLEAQRDTLSNPETGVGGEEAVGRAWGVWLGYMPLRADDEEAEKV
Sbjct: 1142 PGFAPFSGQALKVLVEVILRPDARHDDREMATDNAVSALGNLLEAQRDTLSNPETGVGGEEAVGRAWGVWLGYMPLRADDEEAEKV 1227
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BLAST of mRNA_Ecto-sp8_S_contig9864.31687.1 vs. uniprot
Match: I0Z759_COCSC (ARM repeat-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z759_COCSC)

HSP 1 Score: 51.2 bits (121), Expect = 2.060e-5
Identity = 26/65 (40.00%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   64 DARHDDREMATDNAVSALGNLLEAQRDTLSNPETGVGGEEAVGRAWGVWLGYMPLRADDEEAEKV 258
            D R +D EMAT+NAV+ALG +LE     +           A  ++W VW+  +PLR D  EA  V
Sbjct:  951 DGREEDNEMATENAVAALGKVLEFHGAAIE--------ASAAAQSWDVWISSLPLREDKVEARHV 1007
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9864.31687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0F5_ECTSI4.220e-3681.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I0Z759_COCSC2.060e-540.00ARM repeat-containing protein n=2 Tax=Coccomyxa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9864contigEcto-sp8_S_contig9864:6730..6999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score138.7
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D7G0F5
Preferred nameIPO5
Model size270
KEGG koko:K20222
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000060,GO:0001101,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042221,GO:0042277,GO:0042306,GO:0042307,GO:0042886,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046822,GO:0046824,GO:0046907,GO:0048518,GO:0050789,GO:0050896,GO:0051049,GO:0051050,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072594,GO:0090087,GO:0090316,GO:1900180,GO:1900182,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951
Exons1
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
Cds size270
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145354.4666536-CDS-Ecto-sp8_S_contig9864:6729..69991681145354.4666536-CDS-Ecto-sp8_S_contig9864:6729..6999Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9864 6730..6999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9864.31687.1prot_Ecto-sp8_S_contig9864.31687.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9864 6730..6999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9864.31687.1

>prot_Ecto-sp8_S_contig9864.31687.1 ID=prot_Ecto-sp8_S_contig9864.31687.1|Name=mRNA_Ecto-sp8_S_contig9864.31687.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=90bp
PLFARVQNSRLCVCLHSCNLTDARHDDREMATDNAVSALGNLLEAQRDTL
SNPETGVGGEEAVGRAWGVWLGYMPLRADDEEAEKVGVV*
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mRNA from alignment at Ecto-sp8_S_contig9864:6730..6999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9864.31687.1 ID=mRNA_Ecto-sp8_S_contig9864.31687.1|Name=mRNA_Ecto-sp8_S_contig9864.31687.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9864:6730..6999- (Ectocarpus species8 EcLAC_412)
CCTCTATTTGCACGTGTCCAAAACAGCCGACTTTGTGTGTGTCTGCACTC
GTGTAATTTAACAGACGCGCGACACGACGACCGAGAGATGGCCACGGATA
ACGCGGTCAGTGCCCTTGGAAACCTCTTGGAGGCGCAGCGAGATACCCTG
TCCAACCCAGAGACCGGGGTCGGGGGCGAAGAAGCGGTGGGGCGCGCGTG
GGGTGTGTGGCTTGGGTACATGCCGCTTCGCGCTGATGACGAGGAGGCGG
AGAAGGTGGGGGTCGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9864:6730..6999-

>mRNA_Ecto-sp8_S_contig9864.31687.1 ID=mRNA_Ecto-sp8_S_contig9864.31687.1|Name=mRNA_Ecto-sp8_S_contig9864.31687.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9864:6730..6999- (Ectocarpus species8 EcLAC_412)
CCTCTATTTGCACGTGTCCAAAACAGCCGACTTTGTGTGTGTCTGCACTC
GTGTAATTTAACAGACGCGCGACACGACGACCGAGAGATGGCCACGGATA
ACGCGGTCAGTGCCCTTGGAAACCTCTTGGAGGCGCAGCGAGATACCCTG
TCCAACCCAGAGACCGGGGTCGGGGGCGAAGAAGCGGTGGGGCGCGCGTG
GGGTGTGTGGCTTGGGTACATGCCGCTTCGCGCTGATGACGAGGAGGCGG
AGAAGGTGGGGGTCGTCTAA
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