mRNA_Ecto-sp8_S_contig9860.31680.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9860.31680.1
Unique NamemRNA_Ecto-sp8_S_contig9860.31680.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9860.31680.1 vs. uniprot
Match: D7G0B4_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0B4_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 4.120e-62
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:    9 SYNIFNEAMSVAVTMMDTNFSAAFKRSEAYKQLERNVQDEAEELERLRKMNQLPPKNHVPTEPKGFVKVFRRFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPSATTECTTRMSMKMMSSHSLLPPESGRNAGAGAAVRWDESDLDV 461
            SYNIFNEAMSVAVTMMDTNFSAAFKRSEAYKQLERNV+DEAEELERLRKMNQLPPKNHVPTEPKG VKVFRRFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPSATTECTTRMSMKMMSSHSLL PESG +AGAGAAVR DESDLDV
Sbjct:  310 SYNIFNEAMSVAVTMMDTNFSAAFKRSEAYKQLERNVRDEAEELERLRKMNQLPPKNHVPTEPKGLVKVFRRFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPSATTECTTRMSMKMMSSHSLLRPESGGHAGAGAAVRGDESDLDV 460
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BLAST of mRNA_Ecto-sp8_S_contig9860.31680.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.510e-14
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 3 
Query:    9 SYNIFNEAMSVAVTMMDTNFSAAFKRSEAYKQLERNVQDEAEELERLRKMNQLPPKNHVPTEPKGFVKVFRR 224
            SYNIF+EAMS  + +MDTNFS  FK++EA+K LE+ V++EAEELE LRKMNQLP   HV  + KG +K  RR
Sbjct:  338 SYNIFDEAMSAVLKIMDTNFSFEFKKTEAFKNLEQVVKEEAEELELLRKMNQLPEAEHVEPDSKGLLKFIRR 409
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BLAST of mRNA_Ecto-sp8_S_contig9860.31680.1 vs. uniprot
Match: A0A6H5K1F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F7_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.840e-11
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 3 
Query:    3 FVSYNIFNEAMSVAVTMMDTNFSAAFKRSEAYKQLERNVQDEAEELERLRKMNQ 164
            ++S+NIF+EAMSV VTMMDTNFS AFKRSEAYK LE++V+DEAEEL+ L+K+ +
Sbjct:  755 YLSFNIFSEAMSVVVTMMDTNFSVAFKRSEAYKLLEQHVKDEAEELKILKKVGE 808
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9860.31680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0B4_ECTSI4.120e-6296.03RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G7J3_ECTSI1.510e-1461.11RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K1F7_9PHAE1.840e-1170.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9860contigEcto-sp8_S_contig9860:1451..3007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score198.7
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog2880.D7G0B4
Preferred nameRGS1
Model size921
KEGG koko:K16449
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
Exons3
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_004570.2
Cds size432
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145353.9620502-UTR-Ecto-sp8_S_contig9860:1450..14821681145353.9620502-UTR-Ecto-sp8_S_contig9860:1450..1482Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9860 1451..1482 +
1681145354.0175526-UTR-Ecto-sp8_S_contig9860:2550..30071681145354.0175526-UTR-Ecto-sp8_S_contig9860:2550..3007Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9860 2551..3007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145353.9768703-CDS-Ecto-sp8_S_contig9860:1482..16051681145353.9768703-CDS-Ecto-sp8_S_contig9860:1482..1605Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9860 1483..1605 +
1681145353.988844-CDS-Ecto-sp8_S_contig9860:2061..22471681145353.988844-CDS-Ecto-sp8_S_contig9860:2061..2247Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9860 2062..2247 +
1681145354.0022333-CDS-Ecto-sp8_S_contig9860:2427..25501681145354.0022333-CDS-Ecto-sp8_S_contig9860:2427..2550Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9860 2428..2550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9860.31680.1prot_Ecto-sp8_S_contig9860.31680.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9860 1483..2550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9860.31680.1

>prot_Ecto-sp8_S_contig9860.31680.1 ID=prot_Ecto-sp8_S_contig9860.31680.1|Name=mRNA_Ecto-sp8_S_contig9860.31680.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
MSVAVTMMDTNFSAAFKRSEAYKQLERNVQDEAEELERLRKMNQLPPKNH
VPTEPKGFVKVFRRFFPPPPSEASLRSGSSRSGGSSVGGREGSTTSSHPS
ATTECTTRMSMKMMSSHSLLPPESGRNAGAGAAVRWDESDLDV*
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mRNA from alignment at Ecto-sp8_S_contig9860:1451..3007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9860.31680.1 ID=mRNA_Ecto-sp8_S_contig9860.31680.1|Name=mRNA_Ecto-sp8_S_contig9860.31680.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1557bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9860:1451..3007+ (Ectocarpus species8 EcLAC_412)
CATTCGTCAGCTACAACATCTTCAACGAAGCCATGTCTGTGGCGGTGACC
ATGATGGACACGAACTTTAGCGCGGCGTTCAAGCGGAGCGAGGCCTACAA
GCAGCTCGAGAGGAATGTCCAAGACGAAGCGGAGGAGTTGGAGAGGCTCA
GGAAGGTGGGTGGGCAAGCTGGCTGGGTAGTAGGTACTGTCTCGTTCGTT
CTTGTTTGTTGTTTGTTGTTGTTGCTGTTGTTCTTGTTGTTGGTGGTGAT
GTTCCAACTCGGGCAGGTTTTTCACGTTTCGGTGCTACGATTCTGCTCTA
GTTGTAGCTGTTGTCCTCATGTTCTTTTACTGTCACAAGCGTTTCGTCGT
ATCATTTCCATTAACGGACGTAAAAAATAGACAGAGGAAACTGCTCTTTT
TCTGCCACCCTAGAAACGACAAGAAAGTGGAACTTTGTTTCCCTTCTGCA
CAAAGAAATGAGAAACGATGTTTGGGGGGGCCTTGACGTTTTTCCCCAGC
CCCGTGGTCGGTGTGTGTTGGCTGCAATCTTCACTTGGACCGTCCGGCGA
GGGCACCTACACCGAGCTGAACCCTCGAGTCTGTCTCCCTCCCCGCCTTT
TCCATTTTCAGATGAACCAGCTCCCGCCCAAGAATCACGTCCCGACAGAG
CCGAAAGGGTTCGTGAAGGTGTTTCGGCGGTTCTTTCCCCCGCCCCCCAG
TGAGGCTTCTCTCAGATCGGGTTCATCGCGCTCTGGCGGGAGCTCCGTGG
GAGGGAGAGAGGGCTCCACGACGTCTTCTCATCCTAGCGCGACTACGGCG
AGTTATTATTGCTTGCTGTTGGTATGGTGGTTGTAACTGTTGTTGTCATT
GTCGTTGTTTGCTGTTGATATTGCTGTCGGTCAGGTTGTTTTTGTCATTG
TTGCAGGCGTTGATACTGCTCTTTCTCAACCGCCCTTTTTACCTTGATCT
TATGTGTTTTCATGTCGTTGCTCTCAGGAATGTACTACCAGGATGAGCAT
GAAGATGATGAGCAGCCACAGCCTCTTGCCGCCAGAAAGCGGGCGGAATG
CGGGGGCAGGTGCGGCGGTGAGGTGGGACGAAAGCGATCTCGACGTGTGA
CGTGGGGCCATGCGATTTACTGCATGAATGCCGGGTTCGAACAAACAAAC
TCAACCTGTGTGATGGCACCCAATCAGCCAACGAGGCCTTTTTTTCGGGG
GCCAACGGAAACAATGCGTGTTGGGGGGAACAGAAGGAGGCGGCTTTTCG
CGGACAACGGAGGCATTGTTCACGTGACGGAAGGAAGCGTTTTCTCGTGA
GTCAAATGAGGCGTCTTGGACGGGACCGAAGGAGGCGTTTTCTCGGGGGT
CAAATGAGACGTCTTGTACGGGACGGAAGGAGGCGTTTTTTGGAGCCAAA
TGAGGCGTCTTGGACGGGACGGAAGGAGGCGTTTTCTCGGGGGCCAAATG
AGGCGTCTTGGACGGGACGGAAGGAGGCGTTTTCCGGGGGGTGATGTAGG
TGTTTTTTTTCGGGACACATGAGGCATTTTTCAGGGGATGGAATCAGGCG
TTTTTTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9860:1451..3007+

>mRNA_Ecto-sp8_S_contig9860.31680.1 ID=mRNA_Ecto-sp8_S_contig9860.31680.1|Name=mRNA_Ecto-sp8_S_contig9860.31680.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9860:1451..3007+ (Ectocarpus species8 EcLAC_412)
ATGTCTGTGGCGGTGACCATGATGGACACGAACTTTAGCGCGGCGTTCAA
GCGGAGCGAGGCCTACAAGCAGCTCGAGAGGAATGTCCAAGACGAAGCGG
AGGAGTTGGAGAGGCTCAGGAAGATGAACCAGCTCCCGCCCAAGAATCAC
GTCCCGACAGAGCCGAAAGGGTTCGTGAAGGTGTTTCGGCGGTTCTTTCC
CCCGCCCCCCAGTGAGGCTTCTCTCAGATCGGGTTCATCGCGCTCTGGCG
GGAGCTCCGTGGGAGGGAGAGAGGGCTCCACGACGTCTTCTCATCCTAGC
GCGACTACGGAATGTACTACCAGGATGAGCATGAAGATGATGAGCAGCCA
CAGCCTCTTGCCGCCAGAAAGCGGGCGGAATGCGGGGGCAGGTGCGGCGG
TGAGGTGGGACGAAAGCGATCTCGACGTGTGA
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