mRNA_Ecto-sp8_S_contig98554.31676.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98554.31676.1
Unique NamemRNA_Ecto-sp8_S_contig98554.31676.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98554.31676.1 vs. uniprot
Match: D7G0A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A9_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.280e-58
Identity = 110/126 (87.30%), Postives = 113/126 (89.68%), Query Frame = 1 
Query:    1 KSVVPSRVSRNERGGGCRPPGAEAERAMRSRGQTTQRACQPEAKDVARRRSRRALSGGAEKRTALEGRDQRRFRPDVAAGRSDTASATAKRRPAPAIARHSLRNVFLVLFAAMLAAPRINNTSTST 378
            KSVVPS VSRNERG GCRPPGAEAE+AMRSRGQT QRACQ EAKDVARRR RRAL  G EKRTALE RDQRRFRPDVAAGRSDTASATA+RR APAIARHSLRN FLVLFAAMLA PRINN S+ST
Sbjct:   62 KSVVPSTVSRNERGEGCRPPGAEAEQAMRSRGQTNQRACQQEAKDVARRRRRRALPTGGEKRTALEARDQRRFRPDVAAGRSDTASATARRRSAPAIARHSLRNAFLVLFAAMLATPRINNPSSST 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98554.31676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A9_ECTSI2.280e-5887.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98554contigEcto-sp8_S_contig98554:184..561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145353.5845351-CDS-Ecto-sp8_S_contig98554:183..5611681145353.5845351-CDS-Ecto-sp8_S_contig98554:183..561Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98554 184..561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98554.31676.1prot_Ecto-sp8_S_contig98554.31676.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98554 184..561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98554.31676.1

>prot_Ecto-sp8_S_contig98554.31676.1 ID=prot_Ecto-sp8_S_contig98554.31676.1|Name=mRNA_Ecto-sp8_S_contig98554.31676.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=126bp
KSVVPSRVSRNERGGGCRPPGAEAERAMRSRGQTTQRACQPEAKDVARRR
SRRALSGGAEKRTALEGRDQRRFRPDVAAGRSDTASATAKRRPAPAIARH
SLRNVFLVLFAAMLAAPRINNTSTST
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mRNA from alignment at Ecto-sp8_S_contig98554:184..561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98554.31676.1 ID=mRNA_Ecto-sp8_S_contig98554.31676.1|Name=mRNA_Ecto-sp8_S_contig98554.31676.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98554:184..561+ (Ectocarpus species8 EcLAC_412)
AAGAGTGTGGTCCCTTCGAGGGTTTCCAGAAACGAACGCGGAGGCGGTTG
CCGGCCTCCAGGGGCGGAAGCAGAACGAGCGATGCGAAGCAGGGGACAGA
CGACCCAGCGTGCCTGCCAGCCGGAGGCGAAAGACGTTGCGCGGAGGAGG
AGCAGGAGAGCACTTTCGGGGGGGGCCGAGAAACGAACAGCTCTGGAAGG
TAGAGATCAGCGACGATTCCGACCCGACGTCGCCGCCGGTAGGAGCGACA
CCGCCAGCGCCACGGCGAAGCGGCGGCCTGCCCCCGCCATCGCCCGCCAC
TCCCTGAGAAATGTCTTCCTGGTTCTCTTCGCCGCCATGCTCGCGGCGCC
GCGAATCAACAACACGTCGACCTCGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98554:184..561+

>mRNA_Ecto-sp8_S_contig98554.31676.1 ID=mRNA_Ecto-sp8_S_contig98554.31676.1|Name=mRNA_Ecto-sp8_S_contig98554.31676.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98554:184..561+ (Ectocarpus species8 EcLAC_412)
AAGAGTGTGGTCCCTTCGAGGGTTTCCAGAAACGAACGCGGAGGCGGTTG
CCGGCCTCCAGGGGCGGAAGCAGAACGAGCGATGCGAAGCAGGGGACAGA
CGACCCAGCGTGCCTGCCAGCCGGAGGCGAAAGACGTTGCGCGGAGGAGG
AGCAGGAGAGCACTTTCGGGGGGGGCCGAGAAACGAACAGCTCTGGAAGG
TAGAGATCAGCGACGATTCCGACCCGACGTCGCCGCCGGTAGGAGCGACA
CCGCCAGCGCCACGGCGAAGCGGCGGCCTGCCCCCGCCATCGCCCGCCAC
TCCCTGAGAAATGTCTTCCTGGTTCTCTTCGCCGCCATGCTCGCGGCGCC
GCGAATCAACAACACGTCGACCTCGACC
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